Wall clock time and date at job start Tue Mar 31 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47325 * 2 1 4 4 N 1.29326 * 126.05946 * 89.97552 * 3 2 1 5 5 N 1.26090 * 117.97651 * 180.02562 * 4 3 2 6 6 C 1.30310 * 117.60542 * 359.97438 * 5 4 3 7 7 S 1.76196 * 126.17485 * 180.02562 * 6 5 4 8 8 C 1.80999 * 99.99802 * 359.95395 * 7 6 5 9 9 C 1.53002 * 109.47206 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47469 * 54.99894 * 9 8 7 11 11 C 1.47206 * 109.46755 * 294.99752 * 9 8 7 12 12 N 9.00179 * 123.75631 * 355.58303 * 2 1 3 13 13 C 1.53005 * 109.47190 * 175.00109 * 9 8 7 14 14 C 1.50696 * 109.46950 * 184.99640 * 13 9 8 15 15 H 1.07999 * 120.00418 * 359.97438 * 14 13 9 16 16 C 1.37882 * 119.99902 * 180.02562 * 14 13 9 17 17 N 1.31508 * 119.99804 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99907 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47420 * 59.99754 * 18 16 14 20 20 H 1.48501 * 109.47141 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46892 * 299.99492 * 18 16 14 22 22 S 1.76481 * 126.06147 * 269.99970 * 3 2 1 23 23 H 1.08998 * 109.46842 * 59.99860 * 1 2 3 24 24 H 1.08996 * 109.47283 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47201 * 300.00014 * 1 2 3 26 26 H 1.09003 * 109.47201 * 239.99986 * 2 1 3 27 27 H 1.09002 * 109.47282 * 120.00303 * 2 1 3 28 28 H 1.09005 * 109.47422 * 299.99826 * 8 7 6 29 29 H 1.09000 * 109.47256 * 60.00324 * 8 7 6 30 30 H 1.08997 * 109.47129 * 304.99551 * 13 9 8 31 31 H 1.09002 * 109.46749 * 64.99840 * 13 9 8 32 32 H 0.97000 * 120.00013 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2857 2.1387 1.0455 5 7 2.7015 3.3158 0.8682 6 6 2.8472 3.7261 -0.3600 7 16 3.4101 5.3176 -0.8649 8 6 3.6787 6.0837 0.7528 9 6 4.1841 7.5152 0.5616 10 1 3.4863 8.0656 -0.0695 11 6 5.5085 7.4863 -0.0803 12 7 6.5319 7.4619 -0.5764 13 6 4.2924 8.2040 1.9235 14 6 4.6716 9.6491 1.7267 15 1 4.8210 10.0374 0.7301 16 6 4.8291 10.4754 2.8192 17 7 4.6477 10.0026 4.0329 18 14 5.2985 12.2670 2.5753 19 1 4.2588 12.9446 1.7597 20 1 5.4038 12.9355 3.8971 21 1 6.6057 12.3451 1.8750 22 16 2.3787 2.4003 -1.4266 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.7402 6.1012 1.3070 29 1 4.4186 5.5082 1.3091 30 1 3.3325 8.1469 2.4369 31 1 5.0551 7.7065 2.5226 32 1 4.7588 10.5838 4.8015 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594733522.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:58 Heat of formation + Delta-G solvation = 47.357768 kcal Electronic energy + Delta-G solvation = -16303.330680 eV Core-core repulsion = 13516.130700 eV Total energy + Delta-G solvation = -2787.199981 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.051 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.04730 -38.47142 -35.80523 -35.46640 -34.18761 -31.64765 -29.61641 -27.72993 -25.79991 -24.40283 -23.73518 -21.70887 -20.19957 -18.86949 -18.45302 -18.01401 -16.86203 -16.78798 -16.18268 -15.54921 -15.44245 -14.98223 -14.64273 -14.59941 -14.20145 -14.05582 -13.81276 -13.52900 -13.23089 -13.02383 -12.73181 -12.69966 -12.47485 -12.33301 -12.16115 -11.96511 -11.60678 -11.57497 -11.44409 -11.29733 -11.06778 -10.66439 -10.56404 -8.90973 -8.20487 -6.29882 -0.81189 -0.55123 0.04520 0.36393 0.83762 1.40022 1.42420 1.43744 1.50890 1.81213 1.86267 2.41426 3.00636 3.11914 3.16341 3.69399 3.78482 4.01959 4.04059 4.26093 4.33499 4.44055 4.64516 4.76223 4.78701 4.98216 5.05500 5.32139 5.43062 5.53233 5.75851 6.13688 6.63520 6.83544 7.39114 7.41566 8.90272 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.035003 B = 0.003283 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.743820 B = 8525.929672 C = 9038.145126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C 0.038 3.962 4 N -0.289 5.289 5 N -0.294 5.294 6 C -0.022 4.022 7 S 0.039 5.961 8 C -0.094 4.094 9 C 0.035 3.965 10 H 0.138 0.862 11 C 0.243 3.757 12 N -0.484 5.484 13 C 0.043 3.957 14 C -0.541 4.541 15 H 0.060 0.940 16 C 0.012 3.988 17 N -0.923 5.923 18 Si 0.950 3.050 19 H -0.261 1.261 20 H -0.284 1.284 21 H -0.280 1.280 22 S 0.142 5.858 23 H 0.061 0.939 24 H 0.096 0.904 25 H 0.047 0.953 26 H 0.118 0.882 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.040 0.960 31 H 0.004 0.996 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.636 -19.780 -11.682 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.247 4.247 4 N -0.124 5.124 5 N -0.135 5.135 6 C -0.410 4.410 7 S 0.271 5.729 8 C -0.245 4.245 9 C 0.011 3.989 10 H 0.156 0.844 11 C -0.074 4.074 12 N -0.161 5.161 13 C 0.003 3.997 14 C -0.580 4.580 15 H 0.078 0.922 16 C -0.187 4.187 17 N -0.563 5.563 18 Si 0.776 3.224 19 H -0.186 1.186 20 H -0.209 1.209 21 H -0.205 1.205 22 S 0.383 5.617 23 H 0.080 0.920 24 H 0.115 0.885 25 H 0.066 0.934 26 H 0.137 0.863 27 H 0.126 0.874 28 H 0.145 0.855 29 H 0.113 0.887 30 H 0.059 0.941 31 H 0.023 0.977 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.894 -19.235 -13.052 24.888 hybrid contribution 0.027 0.770 1.849 2.003 sum -8.867 -18.465 -11.203 23.347 Atomic orbital electron populations 1.21799 0.92120 1.04295 1.02251 1.20504 0.97567 0.83909 1.06533 1.30726 1.01207 1.04027 0.88697 1.70731 1.13989 0.99199 1.28452 1.71739 1.16852 1.07759 1.17123 1.31581 1.06851 1.06999 0.95555 1.85765 1.77803 0.98222 1.11129 1.23760 1.07541 0.96677 0.96525 1.18925 0.85787 0.94689 0.99473 0.84443 1.29404 0.95041 0.91255 0.91695 1.81099 1.12437 1.10420 1.12097 1.19023 0.98148 0.93690 0.88886 1.21488 1.47530 0.95897 0.93047 0.92170 1.25728 0.95232 1.02736 0.95020 1.70032 1.50122 1.37560 0.98568 0.85717 0.78913 0.80359 0.77419 1.18568 1.20910 1.20537 1.85449 1.61354 1.04097 1.10818 0.92039 0.88543 0.93365 0.86349 0.87406 0.85452 0.88689 0.94135 0.97710 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.89 71.98 0.71 -0.60 16 2 C -0.04 -0.46 6.56 29.85 0.20 -0.27 16 3 C 0.04 0.75 7.04 88.48 0.62 1.38 16 4 N -0.29 -8.14 11.55 -47.71 -0.55 -8.69 16 5 N -0.29 -9.10 10.96 -54.83 -0.60 -9.70 16 6 C -0.02 -0.60 7.85 130.47 1.02 0.42 16 7 S 0.04 1.03 21.71 -56.49 -1.23 -0.20 16 8 C -0.09 -2.82 4.63 71.98 0.33 -2.48 16 9 C 0.03 1.21 2.22 -12.59 -0.03 1.18 16 10 H 0.14 4.19 8.14 -2.39 -0.02 4.17 16 11 C 0.24 9.59 13.31 89.43 1.19 10.78 16 12 N -0.48 -20.76 18.55 20.03 0.37 -20.39 16 13 C 0.04 1.94 4.42 29.85 0.13 2.07 16 14 C -0.54 -28.09 8.60 25.60 0.22 -27.87 16 15 H 0.06 3.03 7.59 -2.91 -0.02 3.01 16 16 C 0.01 0.66 5.46 84.66 0.46 1.12 16 17 N -0.92 -52.93 13.29 21.45 0.28 -52.65 16 18 Si 0.95 42.89 29.54 68.60 2.03 44.92 16 19 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 S 0.14 2.75 23.54 -56.49 -1.33 1.42 16 23 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.13 3.61 8.14 -2.39 -0.02 3.59 16 29 H 0.09 3.04 8.14 -2.40 -0.02 3.02 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -66.13 317.75 4.97 -61.15 By element: Atomic # 1 Polarization: -2.72 SS G_CDS: 1.13 Total: -1.59 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 4.87 Total: -14.27 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -0.50 Total: -91.43 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -2.56 Total: 1.22 kcal Total: -66.13 4.97 -61.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594733522.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.509 kcal (2) G-P(sol) polarization free energy of solvation -66.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds