Wall clock time and date at job start Tue Mar 31 2020 05:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 N 1.37750 * 122.42655 * 87.45140 * 3 2 1 5 5 H 0.97004 * 122.71044 * 0.02562 * 4 3 2 6 6 C 1.35549 * 114.57912 * 179.73129 * 4 3 2 7 7 N 1.30826 * 125.30646 * 180.27557 * 6 4 3 8 8 C 1.46496 * 120.00100 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.47561 * 115.12003 * 8 7 6 10 10 C 1.50701 * 115.54812 * 39.50493 * 9 8 7 11 11 H 1.08001 * 119.99881 * 264.87941 * 10 9 8 12 12 C 1.37884 * 119.99786 * 84.88947 * 10 9 8 13 13 N 1.31509 * 119.99699 * 352.88358 * 12 10 9 14 14 Si 1.86798 * 119.99961 * 172.88774 * 12 10 9 15 15 H 1.48500 * 109.47056 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47115 * 119.99805 * 14 12 10 17 17 H 1.48501 * 109.46963 * 240.00010 * 14 12 10 18 18 C 1.53002 * 117.49708 * 253.80193 * 9 8 7 19 19 C 1.52998 * 117.49976 * 185.17804 * 9 8 7 20 20 S 1.75892 * 109.38555 * 0.27261 * 6 4 3 21 21 C 1.33699 * 122.43107 * 267.71000 * 3 2 1 22 22 Cl 1.73606 * 125.07153 * 359.97438 * 21 3 2 23 23 H 1.09003 * 109.46711 * 235.12132 * 8 7 6 24 24 H 1.09003 * 109.47168 * 355.11395 * 8 7 6 25 25 H 0.97002 * 119.99486 * 180.02562 * 13 12 10 26 26 H 1.09000 * 117.50191 * 359.97438 * 18 9 8 27 27 H 1.09007 * 117.49799 * 145.01728 * 18 9 8 28 28 H 1.09001 * 117.49864 * 214.97248 * 19 9 8 29 29 H 1.09000 * 117.49686 * 359.97438 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3067 -0.0507 -1.1616 5 1 2.8988 -0.0897 -2.0408 6 6 4.6494 -0.0361 -0.9769 7 7 5.5442 -0.0719 -1.9307 8 6 6.9707 -0.0512 -1.5979 9 6 7.6130 -1.3731 -2.0231 10 6 7.1344 -1.9352 -3.3369 11 1 6.3437 -2.6707 -3.3536 12 6 7.7063 -1.5107 -4.5175 13 7 8.5682 -0.5175 -4.5108 14 14 7.2567 -2.3464 -6.1265 15 1 6.2730 -3.4276 -5.8648 16 1 6.6624 -1.3495 -7.0529 17 1 8.4777 -2.9269 -6.7409 18 6 7.9784 -2.3680 -0.9196 19 6 9.0799 -1.5978 -1.6508 20 16 5.0012 0.0385 0.7448 21 6 3.2850 0.0461 1.1276 22 17 2.6207 0.1105 2.7302 23 1 7.4542 0.7730 -2.1225 24 1 7.0911 0.0821 -0.5228 25 1 8.9702 -0.2186 -5.3415 26 1 7.7617 -2.0806 0.1092 27 1 7.8727 -3.4295 -1.1438 28 1 9.6987 -2.1526 -2.3560 29 1 9.5875 -0.8036 -1.1034 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596215672.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:07 Heat of formation + Delta-G solvation = 107.545278 kcal Electronic energy + Delta-G solvation = -16824.538731 eV Core-core repulsion = 13902.071876 eV Total energy + Delta-G solvation = -2922.466855 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.024 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.91612 -37.29382 -36.90190 -36.63079 -34.07229 -31.90274 -30.36429 -26.84812 -25.46028 -24.46108 -21.33878 -21.15819 -19.80464 -18.93612 -17.75260 -16.25989 -15.90884 -15.48800 -15.14530 -14.63995 -14.40047 -13.91497 -13.66427 -13.39112 -13.19120 -12.88645 -12.66910 -12.24297 -11.93393 -11.72139 -10.99636 -10.96894 -10.92418 -10.52779 -10.25887 -10.18062 -9.60642 -9.47533 -9.11005 -8.61528 -8.44101 -8.14877 -7.14934 -6.02449 -4.03780 0.56834 0.93692 1.56146 1.67434 2.04574 2.35200 2.88993 2.95850 3.29277 3.37848 3.41569 3.81772 4.42824 4.67722 5.21790 5.26567 5.39278 5.90089 6.12740 6.33095 6.34551 6.50206 6.67997 6.82505 6.90391 7.01952 7.05503 7.29074 7.43917 7.90680 8.14235 8.45869 8.93811 9.60020 11.07945 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.023628 B = 0.004867 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.740153 B = 5751.888246 C = 6589.546138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C 0.265 3.735 3 C 0.207 3.793 4 N -0.605 5.605 5 H 0.432 0.568 6 C 0.318 3.682 7 N -0.457 5.457 8 C 0.109 3.891 9 C 0.046 3.954 10 C -0.471 4.471 11 H 0.057 0.943 12 C 0.073 3.927 13 N -0.881 5.881 14 Si 0.888 3.112 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.213 4.213 19 C -0.153 4.153 20 S 0.063 5.937 21 C -0.142 4.142 22 Cl 0.006 6.994 23 H 0.097 0.903 24 H 0.022 0.978 25 H 0.258 0.742 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.003 2.730 11.405 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.044 5.044 2 C -0.053 4.053 3 C 0.087 3.913 4 N -0.234 5.234 5 H 0.273 0.727 6 C -0.070 4.070 7 N -0.182 5.182 8 C -0.021 4.021 9 C 0.045 3.955 10 C -0.509 4.509 11 H 0.076 0.924 12 C -0.129 4.129 13 N -0.518 5.518 14 Si 0.716 3.284 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.212 1.212 18 C -0.250 4.250 19 C -0.192 4.192 20 S 0.302 5.698 21 C -0.297 4.297 22 Cl 0.034 6.966 23 H 0.115 0.885 24 H 0.039 0.961 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.241 2.850 11.170 14.171 hybrid contribution -0.949 -0.421 -1.199 1.586 sum -9.191 2.429 9.971 13.777 Atomic orbital electron populations 1.81287 1.10780 1.07450 1.04905 1.24294 0.90790 0.94813 0.95434 1.14036 0.83833 1.07200 0.86233 1.41034 1.02883 1.72120 1.07316 0.72664 1.24157 0.87875 1.03195 0.91816 1.71647 1.03705 1.17835 1.25028 1.21885 0.83507 1.01645 0.95021 1.18822 0.93383 0.89791 0.93533 1.20206 1.19279 1.23054 0.88377 0.92443 1.24889 0.94919 0.94534 0.98589 1.69992 1.29422 1.25539 1.26828 0.86605 0.78173 0.79597 0.83999 1.19874 1.21143 1.21162 1.23132 1.07698 0.98305 0.95874 1.22547 0.93098 1.01510 1.01996 1.85821 0.97630 1.83893 1.02430 1.24204 0.98667 1.17367 0.89475 1.98378 1.84237 1.96876 1.17061 0.88538 0.96052 0.93234 0.91575 0.90315 0.89790 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -4.71 18.54 41.84 0.78 -3.93 15 2 C 0.27 3.09 15.16 -22.47 -0.34 2.75 15 3 C 0.21 2.45 6.59 -84.87 -0.56 1.89 15 4 N -0.61 -7.89 5.67 -11.56 -0.07 -7.96 15 5 H 0.43 4.98 8.96 -40.82 -0.37 4.62 15 6 C 0.32 5.10 8.33 -89.64 -0.75 4.36 15 7 N -0.46 -9.15 9.96 -61.51 -0.61 -9.76 15 8 C 0.11 2.30 6.41 -4.05 -0.03 2.28 15 9 C 0.05 1.07 1.75 -155.66 -0.27 0.79 15 10 C -0.47 -12.38 8.15 -34.44 -0.28 -12.66 15 11 H 0.06 1.56 7.82 -52.49 -0.41 1.15 15 12 C 0.07 1.96 5.39 -17.82 -0.10 1.86 15 13 N -0.88 -24.13 12.96 55.43 0.72 -23.41 15 14 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 15 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 18 C -0.21 -4.40 9.88 -26.73 -0.26 -4.67 15 19 C -0.15 -3.39 9.49 -26.73 -0.25 -3.65 15 20 S 0.06 0.87 21.37 -107.50 -2.30 -1.43 15 21 C -0.14 -1.69 7.05 29.14 0.21 -1.49 15 22 Cl 0.01 0.07 28.69 -51.86 -1.49 -1.42 15 23 H 0.10 2.21 8.14 -51.93 -0.42 1.79 15 24 H 0.02 0.40 6.01 -51.93 -0.31 0.09 15 25 H 0.26 6.81 8.31 -40.82 -0.34 6.48 15 26 H 0.07 1.22 8.08 -51.93 -0.42 0.80 15 27 H 0.08 1.64 8.14 -51.93 -0.42 1.21 15 28 H 0.08 1.99 8.14 -51.93 -0.42 1.57 15 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 LS Contribution 298.01 15.07 4.49 4.49 Total: -1.00 -27.67 298.01 -8.47 -36.14 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -2.33 Total: -0.09 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -2.63 Total: -8.54 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.82 Total: -45.07 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.30 Total: -1.43 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -1.49 Total: -1.42 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.67 -8.47 -36.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596215672.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.684 kcal (2) G-P(sol) polarization free energy of solvation -27.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds