Wall clock time and date at job start Tue Mar 31 2020 05:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00175 * 2 1 4 4 H 1.48508 * 109.46996 * 269.99636 * 3 2 1 5 5 H 1.48497 * 109.47435 * 29.99652 * 3 2 1 6 6 H 1.48497 * 109.47058 * 150.00040 * 3 2 1 7 7 C 1.37881 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00083 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99879 * 180.02562 * 7 2 1 10 10 C 1.53512 * 114.17120 * 180.02562 * 9 7 2 11 11 N 1.47478 * 87.93178 * 220.32877 * 10 9 7 12 12 C 1.39055 * 110.99942 * 138.70457 * 11 10 9 13 13 C 1.39433 * 120.15440 * 179.97438 * 12 11 10 14 14 C 1.38665 * 117.89173 * 180.02562 * 13 12 11 15 15 Br 1.89110 * 120.98987 * 180.02562 * 14 13 12 16 16 C 1.38927 * 118.02208 * 0.02562 * 14 13 12 17 17 N 1.31773 * 119.99267 * 359.97438 * 16 14 13 18 18 N 1.28339 * 122.29778 * 0.02562 * 17 16 14 19 19 C 1.47477 * 87.83844 * 27.01068 * 11 10 9 20 20 H 0.96997 * 119.99441 * 0.02562 * 1 2 3 21 21 H 1.09003 * 113.25980 * 312.95758 * 9 7 2 22 22 H 1.09003 * 113.47354 * 105.56712 * 10 9 7 23 23 H 1.08995 * 113.53364 * 335.10630 * 10 9 7 24 24 H 1.07997 * 121.05308 * 0.03995 * 13 12 11 25 25 H 1.07996 * 120.00974 * 180.02562 * 16 14 13 26 26 H 1.09003 * 113.47624 * 87.75481 * 19 11 10 27 27 H 1.08995 * 113.47708 * 218.21821 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.1400 -2.5948 0.0010 11 7 5.1429 -2.0864 0.9554 12 6 5.3992 -3.0201 1.9534 13 6 6.3216 -2.7347 2.9594 14 6 6.5414 -3.6996 3.9307 15 35 7.7726 -3.4043 5.3354 16 6 5.8302 -4.8896 3.8413 17 7 4.9767 -5.0744 2.8544 18 7 4.7686 -4.1856 1.9523 19 6 4.1395 -1.1007 1.3988 20 1 -0.4849 0.8401 -0.0004 21 1 3.9422 -0.5119 -0.7318 22 1 4.5629 -2.8808 -0.9620 23 1 3.4910 -3.3630 0.4213 24 1 6.8480 -1.7920 2.9814 25 1 5.9760 -5.6630 4.5809 26 1 3.4897 -1.4695 2.1924 27 1 4.5620 -0.1207 1.6204 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596434207.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:45 Heat of formation + Delta-G solvation = 111.825533 kcal Electronic energy + Delta-G solvation = -14334.746940 eV Core-core repulsion = 11755.285133 eV Total energy + Delta-G solvation = -2579.461806 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 283.002 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.40613 -39.14068 -34.01383 -33.29686 -32.05763 -30.47257 -28.58974 -25.73705 -24.93103 -24.16314 -22.17379 -18.99329 -17.73575 -17.47405 -16.96960 -16.14306 -15.34018 -14.48206 -14.42052 -13.80922 -13.47059 -13.33747 -12.65169 -12.05314 -11.97200 -11.60084 -11.28711 -10.94920 -10.74156 -10.40272 -10.12205 -10.05385 -9.86924 -9.70067 -9.59706 -9.25283 -8.67767 -8.42733 -6.18915 -4.20832 0.45845 0.80966 1.03077 3.21934 3.30220 3.31488 3.35354 3.81028 4.20796 4.31623 4.32468 4.66854 4.83173 5.04232 5.24506 5.49788 5.57475 5.75806 5.93730 6.12749 6.21911 6.35339 6.50474 6.61146 7.16337 7.45610 7.58185 8.39535 8.65115 8.86423 9.42082 10.93209 Molecular weight = 283.00amu Principal moments of inertia in cm(-1) A = 0.033561 B = 0.004590 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.105247 B = 6098.368256 C = 6535.963685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.259 1.259 7 C -0.512 4.512 8 H 0.079 0.921 9 C 0.004 3.996 10 C 0.017 3.983 11 N -0.439 5.439 12 C 0.245 3.755 13 C -0.087 4.087 14 C -0.085 4.085 15 Br -0.018 7.018 16 C 0.039 3.961 17 N -0.213 5.213 18 N -0.259 5.259 19 C 0.004 3.996 20 H 0.266 0.734 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.097 0.903 24 H 0.160 0.840 25 H 0.177 0.823 26 H 0.073 0.927 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.729 -5.472 11.114 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.550 4.550 8 H 0.097 0.903 9 C -0.015 4.015 10 C -0.110 4.110 11 N -0.160 5.160 12 C 0.007 3.993 13 C -0.120 4.120 14 C -0.176 4.176 15 Br 0.066 6.934 16 C -0.130 4.130 17 N -0.054 5.054 18 N -0.105 5.105 19 C -0.122 4.122 20 H 0.076 0.924 21 H 0.081 0.919 22 H 0.094 0.906 23 H 0.115 0.885 24 H 0.177 0.823 25 H 0.194 0.806 26 H 0.092 0.908 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.558 -6.025 10.665 20.596 hybrid contribution 0.655 1.494 0.839 1.834 sum 17.213 -4.531 11.504 21.193 Atomic orbital electron populations 1.69906 1.06409 1.27264 1.49330 1.25043 0.94692 0.99232 0.93868 0.86879 0.80544 0.83448 0.78834 1.20052 1.21348 1.18376 1.20872 0.87725 0.94855 1.51521 0.90293 1.20570 0.96924 0.92805 0.91243 1.23965 0.91478 1.00480 0.95112 1.66560 1.33083 1.08646 1.07695 1.22440 0.91295 0.93587 0.91952 1.22049 0.97189 1.00322 0.92445 1.23051 0.99614 0.97952 0.96947 1.96788 1.56232 1.96613 1.43747 1.24254 0.94195 0.95860 0.98655 1.72969 1.11710 1.22195 0.98524 1.73253 1.18482 1.00666 1.18141 1.24678 0.90300 0.94070 1.03158 0.92413 0.91903 0.90636 0.88491 0.82255 0.80617 0.90827 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.96 55.43 0.77 -25.53 15 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 15 3 Si 0.88 20.22 27.14 -169.99 -4.61 15.61 15 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.26 -5.56 5.69 56.52 0.32 -5.24 15 7 C -0.51 -13.70 9.37 -34.44 -0.32 -14.03 15 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 15 9 C 0.00 0.09 2.96 -91.24 -0.27 -0.17 15 10 C 0.02 0.34 6.96 -7.55 -0.05 0.29 15 11 N -0.44 -8.19 6.43 -182.54 -1.17 -9.37 15 12 C 0.25 4.27 5.92 -154.76 -0.92 3.35 15 13 C -0.09 -1.23 9.92 -38.98 -0.39 -1.62 15 14 C -0.08 -1.05 6.28 -39.17 -0.25 -1.30 15 15 Br -0.02 -0.18 33.79 -68.01 -2.30 -2.48 15 16 C 0.04 0.50 11.10 -17.32 -0.19 0.30 15 17 N -0.21 -3.52 11.49 30.59 0.35 -3.17 15 18 N -0.26 -4.80 9.40 31.23 0.29 -4.51 15 19 C 0.00 0.08 6.64 -7.55 -0.05 0.03 15 20 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 21 H 0.06 1.38 7.04 -51.93 -0.37 1.01 15 22 H 0.08 1.41 8.14 -51.93 -0.42 0.98 15 23 H 0.10 2.08 6.64 -51.93 -0.34 1.74 15 24 H 0.16 1.95 8.06 -52.49 -0.42 1.53 15 25 H 0.18 1.64 8.06 -52.49 -0.42 1.22 15 26 H 0.07 1.55 7.85 -51.93 -0.41 1.15 15 27 H 0.08 1.46 7.12 -51.93 -0.37 1.09 15 LS Contribution 255.99 15.07 3.86 3.86 Total: -1.00 -28.82 255.99 -7.74 -36.56 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -2.39 Total: 0.21 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -2.53 Total: -11.19 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.24 Total: -42.57 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.61 Total: 15.61 kcal Atomic # 35 Polarization: -0.18 SS G_CDS: -2.30 Total: -2.48 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.82 -7.74 -36.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596434207.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.381 kcal (2) G-P(sol) polarization free energy of solvation -28.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds