Wall clock time and date at job start Tue Mar 31 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99660 * 2 1 4 4 H 1.48492 * 109.47365 * 269.99732 * 3 2 1 5 5 H 1.48504 * 109.47222 * 30.00298 * 3 2 1 6 6 H 1.48504 * 109.46686 * 149.99977 * 3 2 1 7 7 C 1.37872 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99808 * 173.68271 * 7 2 1 9 9 C 1.50701 * 120.00343 * 353.69513 * 7 2 1 10 10 C 1.53000 * 115.55534 * 85.64440 * 9 7 2 11 11 S 1.81404 * 109.46740 * 65.33089 * 10 9 7 12 12 C 1.81399 * 102.99942 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47139 * 180.02562 * 12 11 10 14 14 N 1.31877 * 119.63080 * 89.99961 * 13 12 11 15 15 C 1.31850 * 121.73948 * 179.97438 * 14 13 12 16 16 C 1.38230 * 120.79565 * 359.97438 * 15 14 13 17 17 C 1.38609 * 119.17419 * 0.26933 * 16 15 14 18 18 C 1.38313 * 119.62531 * 269.97499 * 13 12 11 19 19 Cl 1.73596 * 120.43057 * 0.05084 * 18 13 12 20 20 C 1.53003 * 117.49638 * 231.32267 * 9 7 2 21 21 C 1.53007 * 117.49338 * 299.97828 * 9 7 2 22 22 H 0.96998 * 120.00640 * 355.02096 * 1 2 3 23 23 H 1.08998 * 109.47093 * 305.34055 * 10 9 7 24 24 H 1.08991 * 109.47647 * 185.33476 * 10 9 7 25 25 H 1.09001 * 109.47361 * 60.00161 * 12 11 10 26 26 H 1.09002 * 109.46874 * 300.00291 * 12 11 10 27 27 H 1.07998 * 119.59801 * 180.02562 * 15 14 13 28 28 H 1.08001 * 120.41306 * 179.97438 * 16 15 14 29 29 H 1.08002 * 120.79479 * 179.74958 * 17 16 15 30 30 H 1.09001 * 117.49077 * 214.99731 * 20 9 7 31 31 H 1.08989 * 117.49796 * 0.02562 * 20 9 7 32 32 H 1.08996 * 117.50181 * 359.97438 * 21 9 7 33 33 H 1.09002 * 117.49284 * 144.97315 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0796 -1.1969 -0.1024 9 6 1.2579 -2.4952 0.1444 10 6 0.7095 -3.0886 -1.1548 11 16 2.0894 -3.5561 -2.2356 12 6 1.2526 -4.2267 -3.6987 13 6 2.2813 -4.6674 -4.7079 14 7 2.7406 -5.9032 -4.6736 15 6 3.6403 -6.3329 -5.5363 16 6 4.1377 -5.4948 -6.5166 17 6 3.6833 -4.1870 -6.5819 18 6 2.7328 -3.7714 -5.6599 19 17 2.1232 -2.1465 -5.6972 20 6 1.7410 -3.4717 1.2186 21 6 0.4342 -2.6998 1.4175 22 1 -0.4851 0.8368 0.0729 23 1 0.0882 -2.3482 -1.6586 24 1 0.1112 -3.9708 -0.9272 25 1 0.6178 -3.4575 -4.1387 26 1 0.6404 -5.0803 -3.4078 27 1 3.9921 -7.3522 -5.4769 28 1 4.8749 -5.8532 -7.2199 29 1 4.0572 -3.5086 -7.3345 30 1 1.6682 -4.5370 0.9995 31 1 2.5985 -3.1729 1.8214 32 1 0.4327 -1.8937 2.1511 33 1 -0.4985 -3.2570 1.3292 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600647424.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:09 Heat of formation + Delta-G solvation = 47.679735 kcal Electronic energy + Delta-G solvation = -17043.119907 eV Core-core repulsion = 14221.597431 eV Total energy + Delta-G solvation = -2821.522477 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.049 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.33250 -36.57284 -36.53180 -33.21510 -32.05903 -31.90091 -28.06073 -27.32500 -25.26222 -23.67512 -22.38727 -21.08088 -19.19054 -17.23153 -16.79154 -16.27430 -15.78324 -15.40327 -14.59731 -14.41384 -13.81779 -13.80303 -13.42342 -13.23265 -12.90688 -12.59401 -12.22135 -11.99038 -11.78368 -11.37758 -10.96575 -10.95939 -10.86347 -10.44640 -10.20245 -9.91055 -9.71315 -9.55138 -9.38922 -8.80131 -8.74702 -8.39928 -7.98225 -6.74590 -6.01447 -4.06180 0.73475 0.98558 2.07791 2.41496 3.32884 3.39607 3.43985 3.47558 3.67959 4.12280 4.45162 4.49290 4.59901 4.80153 5.15249 5.26806 5.28130 5.41230 5.42439 5.76786 5.81937 5.87341 6.00535 6.25067 6.35845 6.43338 6.56418 6.77442 6.84325 7.09531 7.43359 7.51684 7.77737 7.91989 8.43098 8.95465 9.59823 11.07775 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.019845 B = 0.005276 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.615878 B = 5306.201183 C = 6193.716128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.886 3.114 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.482 4.482 8 H 0.062 0.938 9 C 0.054 3.946 10 C -0.028 4.028 11 S -0.214 6.214 12 C -0.067 4.067 13 C 0.171 3.829 14 N -0.460 5.460 15 C 0.103 3.897 16 C -0.168 4.168 17 C -0.067 4.067 18 C -0.078 4.078 19 Cl -0.037 7.037 20 C -0.205 4.205 21 C -0.147 4.147 22 H 0.259 0.741 23 H 0.084 0.916 24 H 0.049 0.951 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.162 0.838 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 -9.577 -13.065 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.130 4.130 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.053 3.947 10 C -0.176 4.176 11 S 0.015 5.985 12 C -0.215 4.215 13 C 0.032 3.968 14 N -0.169 5.169 15 C -0.054 4.054 16 C -0.189 4.189 17 C -0.094 4.094 18 C -0.109 4.109 19 Cl -0.008 7.008 20 C -0.242 4.242 21 C -0.187 4.187 22 H 0.069 0.931 23 H 0.103 0.897 24 H 0.067 0.933 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.180 0.820 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.763 -9.768 -12.315 16.424 hybrid contribution -0.659 1.538 -0.885 1.893 sum 4.104 -8.230 -13.201 16.088 Atomic orbital electron populations 1.70006 1.05832 1.26738 1.49307 1.24919 0.94744 0.98784 0.94530 0.86692 0.80076 0.83634 0.78228 1.20566 1.21292 1.19830 1.20370 0.92897 0.88448 1.50276 0.92033 1.18445 0.98207 0.93932 0.84152 1.23144 0.95429 1.00486 0.98581 1.87074 1.17356 1.79733 1.14337 1.22285 0.98119 1.03924 0.97184 1.20463 0.95189 0.88492 0.92618 1.67623 1.10850 1.14645 1.23808 1.22867 0.92185 1.00292 0.90094 1.22128 1.02052 0.93829 1.00918 1.21524 0.94103 0.96509 0.97257 1.21907 1.00443 0.88874 0.99627 1.98415 1.86215 1.18296 1.97877 1.23023 0.98374 0.95870 1.06944 1.22573 0.92225 1.01163 1.02745 0.93114 0.89701 0.93279 0.88445 0.88743 0.82044 0.83982 0.83765 0.91354 0.90302 0.89797 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.71 12.90 55.43 0.71 -23.99 16 2 C 0.07 1.99 5.39 -17.82 -0.10 1.90 16 3 Si 0.89 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.48 -13.15 8.49 -34.44 -0.29 -13.44 16 8 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 9 C 0.05 1.34 1.34 -155.65 -0.21 1.13 16 10 C -0.03 -0.63 5.80 37.16 0.22 -0.42 16 11 S -0.21 -4.44 21.41 -107.50 -2.30 -6.74 16 12 C -0.07 -1.13 5.84 36.00 0.21 -0.92 16 13 C 0.17 2.67 6.04 -82.55 -0.50 2.17 16 14 N -0.46 -6.77 10.27 -9.45 -0.10 -6.87 16 15 C 0.10 1.13 11.18 -17.55 -0.20 0.94 16 16 C -0.17 -1.57 10.11 -39.45 -0.40 -1.96 16 17 C -0.07 -0.74 9.98 -39.24 -0.39 -1.13 16 18 C -0.08 -1.09 6.34 -39.35 -0.25 -1.34 16 19 Cl -0.04 -0.55 27.33 -51.86 -1.42 -1.96 16 20 C -0.20 -4.54 9.96 -26.69 -0.27 -4.81 16 21 C -0.15 -3.43 9.40 -26.69 -0.25 -3.68 16 22 H 0.26 6.98 8.32 -40.82 -0.34 6.65 16 23 H 0.08 2.07 8.14 -51.92 -0.42 1.64 16 24 H 0.05 1.01 8.09 -51.93 -0.42 0.59 16 25 H 0.10 1.60 6.90 -51.92 -0.36 1.24 16 26 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 27 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.08 1.75 8.14 -51.94 -0.42 1.32 16 32 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 316.79 15.07 4.77 4.77 Total: -1.00 -29.69 316.79 -9.90 -39.59 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.13 Total: 0.43 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -2.42 Total: -21.57 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.62 Total: -30.86 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -4.44 SS G_CDS: -2.30 Total: -6.74 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.42 Total: -1.96 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.69 -9.90 -39.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600647424.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.268 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds