Wall clock time and date at job start Tue Mar 31 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99660 * 2 1 4 4 H 1.48492 * 109.47365 * 269.99732 * 3 2 1 5 5 H 1.48504 * 109.47222 * 30.00298 * 3 2 1 6 6 H 1.48504 * 109.46686 * 149.99977 * 3 2 1 7 7 C 1.37872 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99808 * 173.68271 * 7 2 1 9 9 C 1.50701 * 120.00343 * 353.69513 * 7 2 1 10 10 C 1.53000 * 115.55534 * 85.64440 * 9 7 2 11 11 S 1.81404 * 109.46740 * 65.33089 * 10 9 7 12 12 C 1.81399 * 102.99942 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47139 * 180.02562 * 12 11 10 14 14 N 1.31877 * 119.63080 * 89.99961 * 13 12 11 15 15 C 1.31850 * 121.73948 * 179.97438 * 14 13 12 16 16 C 1.38230 * 120.79565 * 359.97438 * 15 14 13 17 17 C 1.38609 * 119.17419 * 0.26933 * 16 15 14 18 18 C 1.38313 * 119.62531 * 269.97499 * 13 12 11 19 19 Cl 1.73596 * 120.43057 * 0.05084 * 18 13 12 20 20 C 1.53003 * 117.49638 * 231.32267 * 9 7 2 21 21 C 1.53007 * 117.49338 * 299.97828 * 9 7 2 22 22 H 0.96998 * 120.00640 * 355.02096 * 1 2 3 23 23 H 1.08998 * 109.47093 * 305.34055 * 10 9 7 24 24 H 1.08991 * 109.47647 * 185.33476 * 10 9 7 25 25 H 1.09001 * 109.47361 * 60.00161 * 12 11 10 26 26 H 1.09002 * 109.46874 * 300.00291 * 12 11 10 27 27 H 1.07998 * 119.59801 * 180.02562 * 15 14 13 28 28 H 1.08001 * 120.41306 * 179.97438 * 16 15 14 29 29 H 1.08002 * 120.79479 * 179.74958 * 17 16 15 30 30 H 1.09001 * 117.49077 * 214.99731 * 20 9 7 31 31 H 1.08989 * 117.49796 * 0.02562 * 20 9 7 32 32 H 1.08996 * 117.50181 * 359.97438 * 21 9 7 33 33 H 1.09002 * 117.49284 * 144.97315 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0796 -1.1969 -0.1024 9 6 1.2579 -2.4952 0.1444 10 6 0.7095 -3.0886 -1.1548 11 16 2.0894 -3.5561 -2.2356 12 6 1.2526 -4.2267 -3.6987 13 6 2.2813 -4.6674 -4.7079 14 7 2.7406 -5.9032 -4.6736 15 6 3.6403 -6.3329 -5.5363 16 6 4.1377 -5.4948 -6.5166 17 6 3.6833 -4.1870 -6.5819 18 6 2.7328 -3.7714 -5.6599 19 17 2.1232 -2.1465 -5.6972 20 6 1.7410 -3.4717 1.2186 21 6 0.4342 -2.6998 1.4175 22 1 -0.4851 0.8368 0.0729 23 1 0.0882 -2.3482 -1.6586 24 1 0.1112 -3.9708 -0.9272 25 1 0.6178 -3.4575 -4.1387 26 1 0.6404 -5.0803 -3.4078 27 1 3.9921 -7.3522 -5.4769 28 1 4.8749 -5.8532 -7.2199 29 1 4.0572 -3.5086 -7.3345 30 1 1.6682 -4.5370 0.9995 31 1 2.5985 -3.1729 1.8214 32 1 0.4327 -1.8937 2.1511 33 1 -0.4985 -3.2570 1.3292 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600647424.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:09 Heat of formation + Delta-G solvation = 32.615664 kcal Electronic energy + Delta-G solvation = -17043.773134 eV Core-core repulsion = 14221.597431 eV Total energy + Delta-G solvation = -2822.175704 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.049 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.27709 -38.41134 -37.63941 -34.19764 -33.98284 -33.04392 -29.59554 -28.71010 -27.32051 -24.58633 -23.40311 -22.91838 -21.10773 -18.36572 -17.97756 -17.72405 -17.02159 -16.69474 -16.61466 -15.80987 -15.51926 -15.05213 -14.70000 -14.57727 -14.25965 -13.99025 -13.54320 -13.35829 -13.09742 -13.01405 -12.94379 -12.82929 -12.35190 -12.05671 -12.02445 -11.53922 -11.13434 -10.76584 -10.68856 -10.57593 -10.44951 -9.88146 -9.77714 -8.39099 -8.10024 -6.19497 -0.27331 0.08474 1.01111 1.04808 1.39627 1.41991 1.50941 1.87886 2.44199 2.71748 3.09055 3.18995 3.51190 3.54891 3.80426 3.97873 4.20130 4.24445 4.28219 4.40131 4.42756 4.61468 4.61697 4.70117 4.92687 4.95039 5.00983 5.01411 5.23736 5.52642 5.59227 5.63435 5.78757 6.39816 6.83616 6.83955 7.48179 8.98370 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.019845 B = 0.005276 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.615878 B = 5306.201183 C = 6193.716128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.032 3.968 3 Si 0.939 3.061 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.493 4.493 8 H 0.045 0.955 9 C 0.026 3.974 10 C -0.017 4.017 11 S -0.244 6.244 12 C -0.050 4.050 13 C 0.142 3.858 14 N -0.487 5.487 15 C 0.098 3.902 16 C -0.144 4.144 17 C -0.069 4.069 18 C -0.092 4.092 19 Cl -0.056 7.056 20 C -0.183 4.183 21 C -0.147 4.147 22 H 0.259 0.741 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.197 0.803 28 H 0.189 0.811 29 H 0.171 0.829 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.771 -11.000 -14.702 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.168 4.168 3 Si 0.765 3.235 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.531 4.531 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.165 4.165 11 S -0.015 6.015 12 C -0.198 4.198 13 C 0.004 3.996 14 N -0.197 5.197 15 C -0.060 4.060 16 C -0.164 4.164 17 C -0.095 4.095 18 C -0.123 4.123 19 Cl -0.027 7.027 20 C -0.221 4.221 21 C -0.187 4.187 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.214 0.786 28 H 0.207 0.793 29 H 0.189 0.811 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.295 -11.186 -13.935 18.946 hybrid contribution -1.035 1.840 -0.513 2.172 sum 5.260 -9.346 -14.448 17.994 Atomic orbital electron populations 1.70087 1.06754 1.27283 1.50159 1.25511 0.95463 1.01375 0.94470 0.85863 0.79098 0.80491 0.78060 1.20590 1.20622 1.19582 1.20514 0.92323 0.90105 1.50130 0.93672 1.18558 0.99347 0.94101 0.85543 1.22843 0.95672 1.00124 0.97911 1.86991 1.17854 1.80127 1.16546 1.22179 0.98418 1.03629 0.95549 1.20216 0.96411 0.89619 0.93386 1.67564 1.12315 1.14312 1.25554 1.23568 0.90924 1.02077 0.89448 1.22645 1.01131 0.92438 1.00228 1.21953 0.92894 0.97848 0.96813 1.22068 1.01642 0.87879 1.00665 1.98404 1.86648 1.19690 1.97975 1.22995 0.97502 0.96549 1.05009 1.22501 0.93449 1.01067 1.01705 0.93154 0.92501 0.91723 0.88751 0.88280 0.78628 0.79346 0.81126 0.89202 0.90507 0.91773 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.59 12.90 21.45 0.28 -51.31 16 2 C 0.03 1.78 5.39 84.65 0.46 2.24 16 3 Si 0.94 44.37 29.55 68.60 2.03 46.40 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.49 -27.38 8.49 25.60 0.22 -27.16 16 8 H 0.05 2.59 7.82 -2.91 -0.02 2.57 16 9 C 0.03 1.30 1.34 -52.92 -0.07 1.23 16 10 C -0.02 -0.78 5.80 71.98 0.42 -0.36 16 11 S -0.24 -10.25 21.41 -56.49 -1.21 -11.46 16 12 C -0.05 -1.69 5.84 71.23 0.42 -1.27 16 13 C 0.14 4.30 6.04 42.57 0.26 4.56 16 14 N -0.49 -13.53 10.27 -183.80 -1.89 -15.42 16 15 C 0.10 1.79 11.18 84.69 0.95 2.74 16 16 C -0.14 -2.03 10.11 22.36 0.23 -1.80 16 17 C -0.07 -1.29 9.98 22.49 0.22 -1.07 16 18 C -0.09 -2.47 6.34 22.42 0.14 -2.33 16 19 Cl -0.06 -1.66 27.33 -2.72 -0.07 -1.73 16 20 C -0.18 -8.03 9.96 30.62 0.30 -7.72 16 21 C -0.15 -6.89 9.40 30.62 0.29 -6.60 16 22 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 23 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 24 H 0.06 2.67 8.09 -2.39 -0.02 2.65 16 25 H 0.09 3.19 6.90 -2.39 -0.02 3.18 16 26 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 27 H 0.20 2.08 8.06 -2.91 -0.02 2.06 16 28 H 0.19 0.93 8.06 -2.91 -0.02 0.90 16 29 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 31 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 32 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -65.30 316.79 4.06 -61.24 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 1.10 Total: 9.85 kcal Atomic # 6 Polarization: -41.38 SS G_CDS: 3.82 Total: -37.56 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -1.61 Total: -66.73 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -10.25 SS G_CDS: -1.21 Total: -11.46 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.07 Total: -1.73 kcal Total: -65.30 4.06 -61.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600647424.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.854 kcal (2) G-P(sol) polarization free energy of solvation -65.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds