Wall clock time and date at job start Tue Mar 31 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39745 * 120.21019 * 86.17145 * 3 2 1 5 5 C 1.37886 * 119.91449 * 180.02562 * 4 3 2 6 6 Cl 1.73602 * 119.83187 * 180.02562 * 5 4 3 7 7 C 1.38699 * 120.33514 * 359.72552 * 5 4 3 8 8 C 1.37974 * 120.41816 * 0.55742 * 7 5 4 9 9 C 1.38958 * 120.07862 * 359.44158 * 8 7 5 10 10 S 1.76200 * 120.16631 * 180.26016 * 9 8 7 11 11 C 1.81401 * 102.99898 * 359.97438 * 10 9 8 12 12 C 1.53002 * 109.47244 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46525 * 60.00572 * 12 11 10 14 14 O 1.42900 * 109.47523 * 300.00604 * 12 11 10 15 15 C 1.50698 * 109.47174 * 180.02562 * 12 11 10 16 16 H 1.08000 * 120.00238 * 0.02562 * 15 12 11 17 17 C 1.37883 * 120.00005 * 180.02562 * 15 12 11 18 18 N 1.31519 * 119.99908 * 359.97438 * 17 15 12 19 19 Si 1.86791 * 120.00214 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47408 * 89.99487 * 19 17 15 21 21 H 1.48502 * 109.47558 * 209.99837 * 19 17 15 22 22 H 1.48502 * 109.47268 * 329.99656 * 19 17 15 23 23 H 1.08000 * 120.04080 * 359.97438 * 4 3 2 24 24 H 1.07994 * 119.79271 * 180.29740 * 7 5 4 25 25 H 1.08002 * 119.96195 * 179.72482 * 8 7 5 26 26 H 1.08999 * 109.47710 * 300.00573 * 11 10 9 27 27 H 1.08998 * 109.47042 * 60.00458 * 11 10 9 28 28 H 0.96704 * 113.99682 * 299.99850 * 14 12 11 29 29 H 0.96995 * 120.00074 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2711 -0.0797 -1.2050 5 6 4.6499 -0.0791 -1.1978 6 17 5.5213 -0.1783 -2.6960 7 6 5.3442 0.0065 -0.0002 8 6 4.6639 0.0806 1.1979 9 6 3.2744 0.0814 1.2109 10 16 2.4033 0.1828 2.7391 11 6 3.7380 0.2634 3.9650 12 6 3.1363 0.3571 5.3687 13 1 2.5205 -0.5219 5.5593 14 8 2.3303 1.5332 5.4640 15 6 4.2451 0.4246 6.3870 16 1 5.2759 0.4033 6.0653 17 6 3.9437 0.5136 7.7295 18 7 2.6885 0.5401 8.1213 19 14 5.3180 0.5966 8.9919 20 1 5.6829 2.0157 9.2338 21 1 4.8608 -0.0206 10.2628 22 1 6.5031 -0.1392 8.4826 23 1 2.7352 -0.1429 -2.1405 24 1 6.4241 0.0111 -0.0051 25 1 5.2120 0.1426 2.1265 26 1 4.3531 -0.6335 3.8921 27 1 4.3536 1.1425 3.7747 28 1 2.8140 2.3554 5.3055 29 1 2.4764 0.6030 9.0657 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601912424.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:46 Heat of formation + Delta-G solvation = -9.082859 kcal Electronic energy + Delta-G solvation = -16344.219714 eV Core-core repulsion = 13384.402732 eV Total energy + Delta-G solvation = -2959.816982 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56605 -36.88814 -36.29076 -36.05223 -32.30985 -31.78788 -31.23512 -29.83403 -25.64612 -24.26716 -23.14926 -21.33930 -19.23780 -17.49464 -17.19268 -16.08329 -15.76496 -14.81572 -14.75353 -14.62423 -14.30935 -14.13573 -14.03714 -13.27743 -13.15380 -12.98110 -12.69643 -12.25699 -12.06142 -11.74558 -11.55210 -11.34478 -11.18365 -11.01668 -10.91464 -10.27636 -9.96467 -9.63664 -9.34295 -9.32556 -8.76128 -8.45575 -7.30767 -6.18664 -4.40249 0.43542 0.81004 1.56558 1.86423 2.56778 2.71941 2.79167 3.17672 3.25737 3.26986 3.57665 3.77723 4.24896 4.45786 4.70315 4.98116 5.06868 5.08339 5.44562 5.52980 5.58917 5.70180 5.79942 5.85677 6.04916 6.25357 6.40746 7.39686 7.44768 7.62308 7.88456 8.60699 9.15833 9.36904 10.85223 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.024126 B = 0.003918 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.301310 B = 7144.394391 C = 8211.288476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C 0.255 3.745 3 C -0.014 4.014 4 C -0.043 4.043 5 C -0.059 4.059 6 Cl -0.067 7.067 7 C -0.057 4.057 8 C -0.128 4.128 9 C -0.037 4.037 10 S -0.071 6.071 11 C -0.130 4.130 12 C 0.246 3.754 13 H 0.067 0.933 14 O -0.557 6.557 15 C -0.573 4.573 16 H 0.060 0.940 17 C 0.081 3.919 18 N -0.853 5.853 19 Si 0.896 3.104 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 H 0.144 0.856 24 H 0.142 0.858 25 H 0.147 0.853 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.348 0.652 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.032 -0.890 -17.235 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.076 5.076 2 C -0.060 4.060 3 C -0.026 4.026 4 C -0.065 4.065 5 C -0.090 4.090 6 Cl -0.038 7.038 7 C -0.078 4.078 8 C -0.153 4.153 9 C -0.154 4.154 10 S 0.181 5.819 11 C -0.278 4.278 12 C 0.186 3.814 13 H 0.085 0.915 14 O -0.359 6.359 15 C -0.613 4.613 16 H 0.078 0.922 17 C -0.127 4.127 18 N -0.488 5.488 19 Si 0.723 3.277 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.197 1.197 23 H 0.162 0.838 24 H 0.159 0.841 25 H 0.164 0.836 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.192 0.808 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.467 -1.324 -16.687 17.095 hybrid contribution 3.190 0.358 0.234 3.218 sum 6.657 -0.966 -16.453 17.775 Atomic orbital electron populations 1.81219 1.11645 1.08176 1.06543 1.25254 0.92244 0.94267 0.94269 1.15298 0.84625 1.10328 0.92349 1.20882 0.92118 0.96342 0.97170 1.20532 0.91825 1.08948 0.87653 1.98375 1.76264 1.96854 1.32307 1.21154 1.00801 0.95746 0.90143 1.21238 0.92015 1.02914 0.99115 1.22533 0.96811 0.97923 0.98142 1.86411 1.14838 1.86923 0.93705 1.25153 0.98377 1.05000 0.99259 1.19213 0.90999 0.87005 0.84189 0.91486 1.86629 1.39702 1.15536 1.94051 1.21450 0.92563 1.56017 0.91279 0.92182 1.25048 0.95514 0.93552 0.98546 1.70072 1.16999 1.45626 1.16083 0.86560 0.81988 0.78418 0.80768 1.20371 1.20948 1.19706 0.83838 0.84062 0.83562 0.89217 0.89762 0.80767 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.60 18.54 41.83 0.78 -5.82 15 2 C 0.26 3.72 14.28 -22.48 -0.32 3.40 15 3 C -0.01 -0.18 5.76 -106.59 -0.61 -0.79 15 4 C -0.04 -0.42 9.53 -39.15 -0.37 -0.80 15 5 C -0.06 -0.56 6.31 -39.54 -0.25 -0.81 15 6 Cl -0.07 -0.57 28.94 -51.86 -1.50 -2.07 15 7 C -0.06 -0.53 9.81 -39.51 -0.39 -0.92 15 8 C -0.13 -1.43 9.36 -39.41 -0.37 -1.80 15 9 C -0.04 -0.49 6.15 -38.49 -0.24 -0.73 15 10 S -0.07 -1.20 20.55 -107.50 -2.21 -3.41 15 11 C -0.13 -2.27 3.97 37.16 0.15 -2.13 15 12 C 0.25 5.68 2.88 -27.88 -0.08 5.60 15 13 H 0.07 1.75 8.14 -51.93 -0.42 1.32 15 14 O -0.56 -13.41 12.33 -35.23 -0.43 -13.85 15 15 C -0.57 -14.36 8.76 -34.44 -0.30 -14.66 15 16 H 0.06 1.43 7.74 -52.49 -0.41 1.02 15 17 C 0.08 2.13 5.40 -17.82 -0.10 2.03 15 18 N -0.85 -24.02 12.84 55.43 0.71 -23.31 15 19 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 15 20 H -0.28 -6.13 7.11 56.52 0.40 -5.72 15 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 23 H 0.14 1.14 8.06 -52.49 -0.42 0.72 15 24 H 0.14 0.99 8.06 -52.49 -0.42 0.57 15 25 H 0.15 1.56 5.89 -52.49 -0.31 1.25 15 26 H 0.09 1.46 7.75 -51.92 -0.40 1.05 15 27 H 0.08 1.35 7.75 -51.92 -0.40 0.95 15 28 H 0.35 7.33 9.04 45.56 0.41 7.75 15 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 LS Contribution 296.99 15.07 4.48 4.48 Total: -1.00 -28.92 296.99 -7.60 -36.52 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -1.51 Total: 4.19 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.88 Total: -11.60 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 1.49 Total: -29.13 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.43 Total: -13.85 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -2.21 Total: -3.41 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.92 -7.60 -36.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601912424.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.436 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds