Wall clock time and date at job start Tue Mar 31 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39745 * 120.21019 * 86.17145 * 3 2 1 5 5 C 1.37886 * 119.91449 * 180.02562 * 4 3 2 6 6 Cl 1.73602 * 119.83187 * 180.02562 * 5 4 3 7 7 C 1.38699 * 120.33514 * 359.72552 * 5 4 3 8 8 C 1.37974 * 120.41816 * 0.55742 * 7 5 4 9 9 C 1.38958 * 120.07862 * 359.44158 * 8 7 5 10 10 S 1.76200 * 120.16631 * 180.26016 * 9 8 7 11 11 C 1.81401 * 102.99898 * 359.97438 * 10 9 8 12 12 C 1.53002 * 109.47244 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46525 * 60.00572 * 12 11 10 14 14 O 1.42900 * 109.47523 * 300.00604 * 12 11 10 15 15 C 1.50698 * 109.47174 * 180.02562 * 12 11 10 16 16 H 1.08000 * 120.00238 * 0.02562 * 15 12 11 17 17 C 1.37883 * 120.00005 * 180.02562 * 15 12 11 18 18 N 1.31519 * 119.99908 * 359.97438 * 17 15 12 19 19 Si 1.86791 * 120.00214 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.47408 * 89.99487 * 19 17 15 21 21 H 1.48502 * 109.47558 * 209.99837 * 19 17 15 22 22 H 1.48502 * 109.47268 * 329.99656 * 19 17 15 23 23 H 1.08000 * 120.04080 * 359.97438 * 4 3 2 24 24 H 1.07994 * 119.79271 * 180.29740 * 7 5 4 25 25 H 1.08002 * 119.96195 * 179.72482 * 8 7 5 26 26 H 1.08999 * 109.47710 * 300.00573 * 11 10 9 27 27 H 1.08998 * 109.47042 * 60.00458 * 11 10 9 28 28 H 0.96704 * 113.99682 * 299.99850 * 14 12 11 29 29 H 0.96995 * 120.00074 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2711 -0.0797 -1.2050 5 6 4.6499 -0.0791 -1.1978 6 17 5.5213 -0.1783 -2.6960 7 6 5.3442 0.0065 -0.0002 8 6 4.6639 0.0806 1.1979 9 6 3.2744 0.0814 1.2109 10 16 2.4033 0.1828 2.7391 11 6 3.7380 0.2634 3.9650 12 6 3.1363 0.3571 5.3687 13 1 2.5205 -0.5219 5.5593 14 8 2.3303 1.5332 5.4640 15 6 4.2451 0.4246 6.3870 16 1 5.2759 0.4033 6.0653 17 6 3.9437 0.5136 7.7295 18 7 2.6885 0.5401 8.1213 19 14 5.3180 0.5966 8.9919 20 1 5.6829 2.0157 9.2338 21 1 4.8608 -0.0206 10.2628 22 1 6.5031 -0.1392 8.4826 23 1 2.7352 -0.1429 -2.1405 24 1 6.4241 0.0111 -0.0051 25 1 5.2120 0.1426 2.1265 26 1 4.3531 -0.6335 3.8921 27 1 4.3536 1.1425 3.7747 28 1 2.8140 2.3554 5.3055 29 1 2.4764 0.6030 9.0657 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601912424.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:46 Heat of formation + Delta-G solvation = -26.651014 kcal Electronic energy + Delta-G solvation = -16344.981526 eV Core-core repulsion = 13384.402732 eV Total energy + Delta-G solvation = -2960.578794 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.47228 -37.95631 -37.78700 -37.23575 -34.28662 -32.75972 -32.18080 -31.41108 -27.44567 -25.29442 -24.03064 -23.06048 -20.26524 -19.27628 -18.32985 -17.06411 -16.72305 -16.67544 -16.34417 -16.10823 -15.49615 -15.38652 -15.25063 -14.37731 -14.28087 -14.12330 -13.99855 -13.52418 -13.38774 -13.20503 -12.83944 -12.78901 -12.56568 -12.47012 -12.01106 -11.91902 -11.43456 -10.99969 -10.72681 -10.56013 -10.30667 -10.21755 -8.53267 -8.16062 -6.43392 -0.49396 -0.04404 0.37578 1.04752 1.36043 1.44129 1.45487 1.55357 1.61496 1.73875 2.39958 2.58145 2.75777 3.11412 3.62753 3.92888 4.09174 4.11896 4.15417 4.17090 4.31148 4.63882 4.73996 4.86895 4.96726 5.02701 5.42573 5.51214 5.65337 5.95847 6.32394 6.67241 7.30177 7.48396 8.88566 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.024126 B = 0.003918 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.301310 B = 7144.394391 C = 8211.288476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.271 3.729 3 C -0.024 4.024 4 C -0.032 4.032 5 C -0.052 4.052 6 Cl -0.050 7.050 7 C -0.042 4.042 8 C -0.126 4.126 9 C -0.041 4.041 10 S -0.130 6.130 11 C -0.106 4.106 12 C 0.242 3.758 13 H 0.025 0.975 14 O -0.576 6.576 15 C -0.578 4.578 16 H 0.075 0.925 17 C 0.024 3.976 18 N -0.901 5.901 19 Si 0.965 3.035 20 H -0.273 1.273 21 H -0.289 1.289 22 H -0.258 1.258 23 H 0.165 0.835 24 H 0.173 0.827 25 H 0.154 0.846 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.360 0.640 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.134 -0.807 -19.131 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.044 4.044 3 C -0.035 4.035 4 C -0.054 4.054 5 C -0.082 4.082 6 Cl -0.021 7.021 7 C -0.063 4.063 8 C -0.150 4.150 9 C -0.158 4.158 10 S 0.120 5.880 11 C -0.254 4.254 12 C 0.183 3.817 13 H 0.043 0.957 14 O -0.380 6.380 15 C -0.617 4.617 16 H 0.093 0.907 17 C -0.179 4.179 18 N -0.537 5.537 19 Si 0.789 3.211 20 H -0.199 1.199 21 H -0.215 1.215 22 H -0.182 1.182 23 H 0.183 0.817 24 H 0.190 0.810 25 H 0.172 0.828 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.205 0.795 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.606 -1.240 -18.624 19.799 hybrid contribution 2.298 0.316 0.606 2.397 sum 8.904 -0.925 -18.018 20.119 Atomic orbital electron populations 1.81221 1.12959 1.09919 1.07919 1.25633 0.92704 0.93035 0.93028 1.15370 0.83532 1.11568 0.93063 1.21068 0.92524 0.94928 0.96907 1.20659 0.91712 1.07360 0.88502 1.98396 1.75762 1.96664 1.31267 1.21461 1.02264 0.93526 0.89078 1.21358 0.90868 1.02446 1.00344 1.22301 0.97487 1.00159 0.95860 1.86543 1.16085 1.88797 0.96527 1.24656 0.97997 1.06489 0.96221 1.18986 0.89860 0.85341 0.87500 0.95700 1.86573 1.40563 1.16383 1.94490 1.21907 0.93648 1.54324 0.91813 0.90719 1.25960 0.97599 0.93364 1.00970 1.70232 1.19399 1.47871 1.16219 0.85475 0.79268 0.78520 0.77817 1.19867 1.21507 1.18233 0.81700 0.81007 0.82807 0.87877 0.87879 0.79505 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.92 18.54 19.00 0.35 -14.56 15 2 C 0.27 7.85 14.28 88.33 1.26 9.11 15 3 C -0.02 -0.57 5.76 -21.14 -0.12 -0.69 15 4 C -0.03 -0.54 9.53 22.55 0.21 -0.33 15 5 C -0.05 -0.78 6.31 22.30 0.14 -0.64 15 6 Cl -0.05 -0.66 28.94 -2.72 -0.08 -0.74 15 7 C -0.04 -0.60 9.81 22.32 0.22 -0.38 15 8 C -0.13 -2.43 9.36 22.38 0.21 -2.22 15 9 C -0.04 -1.04 6.15 22.98 0.14 -0.90 15 10 S -0.13 -4.42 20.55 -56.49 -1.16 -5.58 15 11 C -0.11 -3.65 3.97 71.98 0.29 -3.36 15 12 C 0.24 11.45 2.88 29.85 0.09 11.54 15 13 H 0.03 1.38 8.14 -2.38 -0.02 1.36 15 14 O -0.58 -28.56 12.33 -148.98 -1.84 -30.40 15 15 C -0.58 -28.80 8.76 25.60 0.22 -28.58 15 16 H 0.07 3.43 7.74 -2.91 -0.02 3.40 15 17 C 0.02 1.27 5.40 84.66 0.46 1.73 15 18 N -0.90 -52.15 12.84 21.45 0.28 -51.88 15 19 Si 0.96 40.70 29.54 68.60 2.03 42.73 15 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 21 H -0.29 -12.33 7.11 99.48 0.71 -11.62 15 22 H -0.26 -10.21 7.11 99.48 0.71 -9.51 15 23 H 0.17 2.08 8.06 -2.91 -0.02 2.06 15 24 H 0.17 1.49 8.06 -2.91 -0.02 1.47 15 25 H 0.15 2.76 5.89 -2.91 -0.02 2.75 15 26 H 0.10 3.22 7.75 -2.39 -0.02 3.20 15 27 H 0.10 3.12 7.75 -2.39 -0.02 3.11 15 28 H 0.36 15.42 9.04 -74.05 -0.67 14.75 15 29 H 0.26 14.43 8.31 -92.71 -0.77 13.66 15 Total: -1.00 -64.30 296.99 3.23 -61.07 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.54 Total: 14.10 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 3.12 Total: -14.74 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: 0.63 Total: -66.44 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.84 Total: -30.40 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: -4.42 SS G_CDS: -1.16 Total: -5.58 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -64.30 3.23 -61.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601912424.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.416 kcal (2) G-P(sol) polarization free energy of solvation -64.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds