Wall clock time and date at job start Tue Mar 31 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 119.99514 * 2 1 4 4 H 1.48501 * 109.47019 * 239.99539 * 3 2 1 5 5 H 1.48498 * 109.47437 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47257 * 119.99901 * 3 2 1 7 7 C 1.38799 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99721 * 180.02562 * 7 2 1 9 9 S 1.76193 * 119.99933 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00223 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47324 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99699 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00111 * 180.02562 * 11 10 9 14 14 C 1.47427 * 125.64668 * 0.02637 * 13 11 10 15 15 C 1.54909 * 104.83281 * 204.09342 * 14 13 11 16 16 C 1.55158 * 101.61642 * 322.96922 * 15 14 13 17 17 C 1.47014 * 125.65230 * 179.97438 * 13 11 10 18 18 H 1.09001 * 109.88533 * 59.55959 * 17 13 11 19 19 C 1.53004 * 109.88282 * 298.55125 * 17 13 11 20 20 F 1.39893 * 109.47167 * 61.45189 * 19 17 13 21 21 F 1.39898 * 109.47157 * 181.45529 * 19 17 13 22 22 F 1.39900 * 109.46802 * 301.44906 * 19 17 13 23 23 H 0.96990 * 120.00581 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.46684 * 59.99895 * 10 9 7 25 25 H 1.09003 * 109.46885 * 299.99921 * 10 9 7 26 26 H 1.09001 * 110.36908 * 85.25360 * 14 13 11 27 27 H 1.09000 * 110.46067 * 322.97720 * 14 13 11 28 28 H 1.09002 * 111.00594 * 81.06240 * 15 14 13 29 29 H 1.09002 * 111.00655 * 204.87504 * 15 14 13 30 30 H 1.08996 * 110.72495 * 153.88672 * 16 15 14 31 31 H 1.09005 * 110.72041 * 277.15972 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8914 0.0005 11 6 1.9877 -5.3027 -0.0001 12 8 0.7914 -5.5023 0.0000 13 7 2.8445 -6.3430 0.0003 14 6 4.3155 -6.2446 0.0019 15 6 4.8030 -7.5818 -0.6095 16 6 3.7742 -8.5859 -0.0256 17 6 2.4671 -7.7639 0.0003 18 1 1.8703 -7.9890 -0.8836 19 6 1.6684 -8.0902 1.2639 20 9 0.4947 -7.3292 1.2832 21 9 1.3424 -9.4506 1.2713 22 9 2.4381 -7.7890 2.3927 23 1 -0.4850 0.8399 -0.0004 24 1 3.1246 -3.7312 0.8905 25 1 3.1247 -3.7313 -0.8895 26 1 4.6873 -6.1354 1.0207 27 1 4.6419 -5.4054 -0.6123 28 1 4.7496 -7.5563 -1.6979 29 1 5.8132 -7.8189 -0.2755 30 1 3.6716 -9.4547 -0.6756 31 1 4.0596 -8.8883 0.9820 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602389151.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:17 Heat of formation + Delta-G solvation = -186.515105 kcal Electronic energy + Delta-G solvation = -20735.354100 eV Core-core repulsion = 16921.110268 eV Total energy + Delta-G solvation = -3814.243832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.95957 -47.54202 -47.30460 -39.97935 -37.35037 -32.44980 -32.11180 -30.83112 -28.74293 -25.54650 -25.38206 -23.03344 -21.59549 -19.78325 -18.55092 -18.07112 -17.96039 -17.27472 -16.78096 -15.87742 -14.97923 -14.82191 -14.49600 -14.33433 -14.20545 -13.96706 -13.88228 -13.66514 -13.52067 -13.42966 -13.26585 -12.88067 -12.60497 -12.50523 -11.87483 -11.65965 -11.51557 -11.20433 -11.06305 -11.05012 -10.78978 -9.85381 -9.53032 -9.07725 -8.84871 -8.27222 -6.53220 -6.23179 -3.94672 2.49709 2.71494 3.01744 3.21847 3.22541 3.27884 3.49173 3.77304 3.79245 4.16878 4.18495 4.32141 4.52037 4.63185 4.85138 4.95316 5.09618 5.11900 5.31205 5.40572 5.44334 5.47750 5.57797 5.78040 5.83882 6.04082 6.08973 7.38467 7.57348 8.32920 8.37151 9.21770 10.84213 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.031328 B = 0.004494 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.547202 B = 6228.694850 C = 6778.446315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.057 6.057 10 C -0.144 4.144 11 C 0.542 3.458 12 O -0.489 6.489 13 N -0.621 5.621 14 C 0.099 3.901 15 C -0.128 4.128 16 C -0.127 4.127 17 C 0.098 3.902 18 H 0.116 0.884 19 C 0.434 3.566 20 F -0.155 7.155 21 F -0.188 7.188 22 F -0.184 7.184 23 H 0.269 0.731 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.290 -17.744 -0.590 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.170 5.830 10 C -0.294 4.294 11 C 0.331 3.669 12 O -0.360 6.360 13 N -0.360 5.360 14 C -0.024 4.024 15 C -0.166 4.166 16 C -0.165 4.165 17 C -0.009 4.009 18 H 0.134 0.866 19 C 0.379 3.621 20 F -0.136 7.136 21 F -0.169 7.169 22 F -0.166 7.166 23 H 0.079 0.921 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.229 -17.818 -0.562 20.074 hybrid contribution 1.803 1.184 0.294 2.176 sum 11.031 -16.635 -0.268 19.962 Atomic orbital electron populations 1.70002 1.05972 1.27646 1.46618 1.24988 0.95020 0.99023 0.94455 0.86216 0.79237 0.81198 0.78804 1.19923 1.20784 1.19913 1.22809 0.94866 0.91560 1.59283 0.90931 1.85456 1.04573 0.96283 1.96733 1.23499 1.06728 0.94206 1.05001 1.20312 0.85864 0.85539 0.75196 1.90799 1.14538 1.84659 1.46035 1.48627 1.07613 1.03180 1.76590 1.22412 0.79219 0.98991 1.01764 1.22796 0.99051 0.93403 1.01369 1.22731 0.91865 0.98122 1.03739 1.22699 0.98228 0.85276 0.94694 0.86611 1.21170 0.80032 0.74267 0.86676 1.93380 1.48847 1.74788 1.96611 1.93154 1.93312 1.33593 1.96870 1.93152 1.75318 1.92977 1.55134 0.92069 0.89066 0.89032 0.90763 0.89382 0.89870 0.89011 0.88482 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.25 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 10 C -0.14 -2.89 5.16 36.01 0.19 -2.71 16 11 C 0.54 10.28 7.58 -10.99 -0.08 10.19 16 12 O -0.49 -11.12 13.27 5.55 0.07 -11.05 16 13 N -0.62 -8.64 2.98 -162.95 -0.49 -9.13 16 14 C 0.10 0.95 6.69 -2.53 -0.02 0.93 16 15 C -0.13 -0.82 7.08 -24.58 -0.17 -1.00 16 16 C -0.13 -0.93 6.19 -24.84 -0.15 -1.09 16 17 C 0.10 1.15 2.97 -66.90 -0.20 0.95 16 18 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 19 C 0.43 6.15 2.73 37.16 0.10 6.25 16 20 F -0.16 -2.87 14.02 2.25 0.03 -2.84 16 21 F -0.19 -2.38 17.08 2.25 0.04 -2.34 16 22 F -0.18 -2.66 16.52 2.25 0.04 -2.62 16 23 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 25 H 0.09 1.67 7.85 -51.91 -0.41 1.26 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 0.80 7.48 -51.93 -0.39 0.41 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.63 7.35 -51.93 -0.38 0.25 16 LS Contribution 289.57 15.07 4.36 4.36 Total: -1.00 -34.33 289.57 -5.84 -40.17 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: -3.26 Total: -4.31 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -0.14 Total: 0.67 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.25 Total: -34.51 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.07 Total: -11.05 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 0.11 Total: -7.80 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.33 -5.84 -40.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602389151.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.347 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds