Wall clock time and date at job start Tue Mar 31 2020 05:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00223 * 2 1 4 4 C 1.53001 * 109.47134 * 66.04704 * 3 2 1 5 5 C 1.52993 * 109.47444 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47389 * 179.97438 * 5 4 3 7 7 H 1.07995 * 119.99405 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99808 * 180.02562 * 6 5 4 9 9 N 1.31505 * 120.00356 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99547 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47148 * 90.00149 * 10 8 6 12 12 H 1.48496 * 109.46927 * 210.00175 * 10 8 6 13 13 H 1.48495 * 109.46980 * 330.00029 * 10 8 6 14 14 C 1.46897 * 110.99790 * 236.04937 * 2 1 3 15 15 C 1.53004 * 109.47166 * 293.95388 * 14 2 1 16 16 C 1.53001 * 109.47116 * 180.02562 * 15 14 2 17 17 C 1.53004 * 109.47116 * 180.02562 * 16 15 14 18 18 N 1.46897 * 109.47166 * 179.97438 * 17 16 15 19 19 C 1.46854 * 110.99665 * 170.00131 * 18 17 16 20 20 C 1.53037 * 109.51886 * 185.84309 * 19 18 17 21 21 C 1.53126 * 109.27801 * 300.81620 * 20 19 18 22 22 C 1.53124 * 109.15878 * 57.65645 * 21 20 19 23 23 C 1.46844 * 111.00090 * 294.20807 * 18 17 16 24 24 H 1.08996 * 109.47236 * 183.95537 * 1 2 3 25 25 H 1.09008 * 109.46947 * 303.95371 * 1 2 3 26 26 H 1.09004 * 109.47414 * 63.94774 * 1 2 3 27 27 H 1.08999 * 109.47195 * 186.04687 * 3 2 1 28 28 H 1.09000 * 109.47301 * 306.04796 * 3 2 1 29 29 H 1.08999 * 109.47066 * 300.00062 * 4 3 2 30 30 H 1.09000 * 109.46952 * 59.99878 * 4 3 2 31 31 H 1.08995 * 109.47312 * 300.00687 * 5 4 3 32 32 H 1.09000 * 109.46986 * 60.00095 * 5 4 3 33 33 H 0.96999 * 120.00173 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.47402 * 173.95440 * 14 2 1 35 35 H 1.09003 * 109.47565 * 53.95205 * 14 2 1 36 36 H 1.08995 * 109.46996 * 60.00004 * 15 14 2 37 37 H 1.09004 * 109.47245 * 300.00238 * 15 14 2 38 38 H 1.08995 * 109.47303 * 60.00048 * 16 15 14 39 39 H 1.09003 * 109.47067 * 299.99375 * 16 15 14 40 40 H 1.09004 * 109.46918 * 59.99611 * 17 16 15 41 41 H 1.09003 * 109.46728 * 300.00185 * 17 16 15 42 42 H 1.08994 * 109.46310 * 65.82535 * 19 18 17 43 43 H 1.09004 * 109.45830 * 305.85222 * 19 18 17 44 44 H 1.09000 * 109.50480 * 180.88135 * 20 19 18 45 45 H 1.08992 * 109.50737 * 60.75564 * 20 19 18 46 46 H 1.08998 * 109.52297 * 177.56592 * 21 20 19 47 47 H 1.08999 * 109.51925 * 297.75795 * 21 20 19 48 48 H 1.08999 * 109.50059 * 62.28737 * 22 21 20 49 49 H 1.08993 * 109.49981 * 182.40384 * 22 21 20 50 50 H 1.09002 * 109.46133 * 294.17882 * 23 18 17 51 51 H 1.09002 * 109.46211 * 54.14407 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1804 3.4855 1.3186 6 6 1.8213 4.1614 2.6168 7 1 1.2584 3.6257 3.3668 8 6 2.2116 5.4636 2.8470 9 7 2.8967 6.1160 1.9336 10 14 1.7672 6.3012 4.4566 11 1 2.8439 6.0647 5.4514 12 1 1.6149 7.7607 4.2295 13 1 0.4894 5.7439 4.9681 14 6 1.9954 -0.7659 -1.1376 15 6 1.6313 -2.2426 -0.9705 16 6 2.1801 -3.0404 -2.1550 17 6 1.8156 -4.5170 -1.9882 18 7 2.3420 -5.2829 -3.1258 19 6 2.2213 -6.7271 -2.8888 20 6 2.9083 -7.4907 -4.0232 21 6 2.2514 -7.1164 -5.3549 22 6 2.3479 -5.6014 -5.5546 23 6 1.6773 -4.8926 -4.3757 24 1 -0.3633 -1.0252 0.0709 25 1 -0.3633 0.5740 0.8525 26 1 -0.3634 0.4513 -0.9233 27 1 3.0797 1.3443 -0.1083 28 1 1.5611 1.9274 -0.8309 29 1 0.5473 2.0845 1.4265 30 1 2.0659 1.5014 2.1492 31 1 3.2646 3.4581 1.2105 32 1 1.7464 4.0417 0.4877 33 1 3.1709 7.0323 2.0954 34 1 3.0797 -0.6611 -1.1757 35 1 1.5610 -0.3872 -2.0629 36 1 0.5471 -2.3474 -0.9324 37 1 2.0657 -2.6214 -0.0452 38 1 3.2644 -2.9355 -2.1926 39 1 1.7461 -2.6618 -3.0804 40 1 0.7312 -4.6215 -1.9508 41 1 2.2492 -4.8959 -1.0627 42 1 1.1673 -7.0023 -2.8519 43 1 2.6961 -6.9804 -1.9408 44 1 2.8050 -8.5627 -3.8552 45 1 3.9653 -7.2264 -4.0520 46 1 2.7657 -7.6249 -6.1703 47 1 1.2035 -7.4159 -5.3409 48 1 3.3962 -5.3074 -5.6074 49 1 1.8444 -5.3236 -6.4805 50 1 0.6258 -5.1764 -4.3317 51 1 1.7568 -3.8135 -4.5077 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603111575.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:21 Heat of formation + Delta-G solvation = -30.722950 kcal Electronic energy + Delta-G solvation = -21816.485669 eV Core-core repulsion = 18749.152401 eV Total energy + Delta-G solvation = -3067.333268 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.42074 -37.84045 -35.32758 -33.74993 -32.54065 -31.25576 -30.94959 -28.04077 -27.07789 -25.50110 -24.10047 -23.41086 -22.34685 -21.03192 -20.59982 -20.04402 -19.78715 -16.44669 -16.25481 -15.98576 -15.46981 -15.16361 -14.89530 -14.77529 -14.41710 -14.22255 -14.02740 -13.82040 -13.49427 -13.42015 -12.74723 -12.57107 -12.27879 -12.07948 -11.86020 -11.64689 -11.58593 -11.51183 -11.29208 -11.19726 -11.09133 -11.04821 -10.76182 -10.71873 -10.62988 -10.49198 -10.41102 -10.36353 -9.55518 -9.27648 -9.00883 -8.62924 -8.30513 -8.00804 -5.95857 -3.97697 3.34867 3.40671 3.44400 3.52106 4.20838 4.43099 4.45519 4.50555 4.54661 4.74392 4.81951 4.90957 5.05209 5.10464 5.16035 5.21589 5.25090 5.32770 5.39389 5.39826 5.43094 5.48244 5.54732 5.60379 5.60971 5.67228 5.70788 5.74708 5.77209 5.84119 5.84940 5.94233 5.99494 6.04750 6.15607 6.25025 6.29730 6.38681 6.75971 6.79278 6.79721 6.83904 7.17761 7.42875 7.46445 7.73267 7.88707 8.05003 8.48620 9.09564 9.66004 11.15610 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.053659 B = 0.001897 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.693037 B =14753.951417 C =14903.007570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.105 4.105 5 C 0.021 3.979 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.056 3.944 15 C -0.114 4.114 16 C -0.114 4.114 17 C 0.057 3.943 18 N -0.539 5.539 19 C 0.055 3.945 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.118 4.118 23 C 0.052 3.948 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.019 0.981 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.016 0.984 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.031 0.969 41 H 0.075 0.925 42 H 0.030 0.970 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.065 0.935 50 H 0.030 0.970 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -26.998 -14.378 30.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.268 5.268 3 C -0.071 4.071 4 C -0.143 4.143 5 C -0.017 4.017 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.146 4.146 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.073 4.073 15 C -0.152 4.152 16 C -0.153 4.153 17 C -0.071 4.071 18 N -0.264 5.264 19 C -0.073 4.073 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.156 4.156 23 C -0.076 4.076 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.038 0.962 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.048 0.952 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.882 -26.948 -14.030 30.439 hybrid contribution -1.376 0.806 0.170 1.604 sum -3.258 -26.141 -13.860 29.767 Atomic orbital electron populations 1.22438 0.88118 1.01314 1.00783 1.62059 1.07604 1.15112 1.41999 1.22301 0.99501 0.86294 0.99043 1.21653 1.00003 0.98146 0.94475 1.19079 0.96242 0.89393 0.96943 1.21261 1.34660 0.97582 1.02087 0.92687 1.25033 0.95290 0.97519 0.96726 1.69964 1.38451 1.11270 1.33936 0.86596 0.78837 0.78594 0.83986 1.20667 1.21283 1.19912 1.22099 1.00195 0.93295 0.91683 1.21553 1.00790 0.94427 0.98458 1.21570 1.02042 0.93284 0.98374 1.22120 0.97273 0.94175 0.93497 1.61921 1.57309 1.04504 1.02633 1.22080 0.98613 0.87601 0.98998 1.21586 1.00709 0.98971 0.94227 1.21586 1.00566 0.96275 0.97544 1.21592 1.01842 0.94997 0.97130 1.22148 0.95306 1.00490 0.89660 0.92017 0.90736 0.96209 0.91318 0.95472 0.93472 0.92637 0.96611 0.96862 0.93076 0.90942 0.95455 0.92234 0.91045 0.90958 0.92204 0.95053 0.90634 0.95157 0.90753 0.91682 0.91021 0.91868 0.92446 0.91014 0.91661 0.95187 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.13 60.06 0.55 0.86 16 2 N -0.54 -8.48 4.76 -242.91 -1.16 -9.64 16 3 C 0.06 1.01 4.96 -3.82 -0.02 1.00 16 4 C -0.10 -2.26 5.08 -26.73 -0.14 -2.39 16 5 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 6 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 7 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.42 13.29 55.43 0.74 -26.69 16 10 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.06 0.71 4.96 -3.82 -0.02 0.69 16 15 C -0.11 -1.19 5.14 -26.73 -0.14 -1.33 16 16 C -0.11 -1.04 5.14 -26.73 -0.14 -1.18 16 17 C 0.06 0.49 4.96 -3.82 -0.02 0.47 16 18 N -0.54 -4.60 4.66 -234.66 -1.09 -5.70 16 19 C 0.06 0.41 5.46 -3.83 -0.02 0.39 16 20 C -0.12 -0.75 6.09 -26.65 -0.16 -0.91 16 21 C -0.12 -0.75 6.00 -26.60 -0.16 -0.91 16 22 C -0.12 -0.80 6.09 -26.65 -0.16 -0.96 16 23 C 0.05 0.41 5.29 -3.84 -0.02 0.39 16 24 H 0.06 0.75 6.47 -51.93 -0.34 0.41 16 25 H 0.07 1.13 6.30 -51.92 -0.33 0.80 16 26 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 28 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.05 1.00 6.47 -51.93 -0.34 0.66 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16 35 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 36 H 0.06 0.62 6.55 -51.93 -0.34 0.28 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 40 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 41 H 0.08 0.64 7.99 -51.93 -0.41 0.22 16 42 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.07 0.52 8.02 -51.93 -0.42 0.11 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 51 H 0.08 0.63 6.21 -51.93 -0.32 0.31 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -30.39 386.12 -12.09 -42.47 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -10.38 Total: -5.98 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.99 Total: -17.31 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -1.51 Total: -42.02 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.39 -12.09 -42.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603111575.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.750 kcal (2) G-P(sol) polarization free energy of solvation -30.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds