Wall clock time and date at job start Tue Mar 31 2020 05:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35341 * 126.75090 * 125.00400 * 10 9 7 12 12 N 1.35312 * 106.17598 * 179.97438 * 11 10 9 13 13 C 1.46503 * 125.86851 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47269 * 124.99868 * 13 12 11 15 15 S 1.75878 * 125.20187 * 269.69807 * 14 13 12 16 16 C 1.75881 * 90.98375 * 179.97438 * 15 14 13 17 17 C 1.33407 * 109.60697 * 0.34140 * 16 15 14 18 18 C 1.33440 * 125.20022 * 89.99617 * 14 13 12 19 19 Cl 1.73602 * 122.55247 * 0.02562 * 18 14 13 20 20 N 1.28713 * 108.26343 * 359.97438 * 12 11 10 21 21 N 1.28637 * 110.17796 * 359.72483 * 20 12 11 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.08001 * 126.91742 * 0.02562 * 11 10 9 26 26 H 1.09004 * 109.46987 * 244.99558 * 13 12 11 27 27 H 1.08991 * 109.47167 * 4.99567 * 13 12 11 28 28 H 1.07997 * 125.19857 * 180.02562 * 16 15 14 29 29 H 1.07989 * 122.54687 * 179.76157 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.8739 -3.1729 -0.8729 12 7 5.0378 -4.4572 -0.4798 13 6 5.8860 -5.4546 -1.1372 14 6 6.8532 -6.0304 -0.1352 15 16 8.4581 -5.3964 0.2047 16 6 8.7346 -6.6545 1.4023 17 6 7.6642 -7.4477 1.4736 18 6 6.6251 -7.1025 0.6258 19 17 5.1398 -7.9986 0.5561 20 7 4.3212 -4.6518 0.5716 21 7 3.7028 -3.5707 0.8934 22 1 -0.4849 0.8400 0.0004 23 1 3.8786 -0.6821 -0.8838 24 1 3.8711 -0.6785 0.8962 25 1 5.3371 -2.6900 -1.7206 26 1 5.2626 -6.2527 -1.5404 27 1 6.4408 -4.9822 -1.9477 28 1 9.6353 -6.7706 1.9867 29 1 7.6116 -8.2937 2.1426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603223123.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:06 Heat of formation + Delta-G solvation = 129.381650 kcal Electronic energy + Delta-G solvation = -16780.464443 eV Core-core repulsion = 13858.944484 eV Total energy + Delta-G solvation = -2921.519959 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.024 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.57353 -38.65018 -36.23887 -34.91428 -33.18244 -31.28702 -30.65825 -27.97501 -26.78172 -23.88300 -23.06469 -21.42156 -20.19783 -19.85429 -17.72253 -16.91838 -16.69134 -16.44373 -15.38015 -14.37445 -14.23247 -14.05875 -13.74513 -13.71318 -13.33884 -12.99793 -12.36234 -12.12102 -12.00524 -11.60108 -11.40695 -11.08791 -11.02893 -10.62267 -10.57453 -10.09488 -9.84414 -9.44576 -9.30244 -9.21412 -8.71415 -8.51691 -8.24048 -5.97702 -3.95533 0.35230 0.92571 1.37858 2.04982 2.16918 2.30633 2.88454 3.32677 3.40876 3.42139 3.44728 4.11311 4.34466 4.48091 4.70673 4.98415 4.99959 5.10999 5.34421 5.37656 5.59600 5.70158 5.77314 5.95113 6.21586 6.87705 7.07516 7.11332 7.23451 7.75322 8.60040 9.10704 9.27277 9.61363 11.15852 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.029710 B = 0.004085 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.211960 B = 6853.127002 C = 7448.488219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.506 4.506 8 H 0.076 0.924 9 C 0.060 3.940 10 C 0.041 3.959 11 C -0.083 4.083 12 N -0.304 5.304 13 C 0.196 3.804 14 C -0.213 4.213 15 S 0.159 5.841 16 C -0.194 4.194 17 C -0.133 4.133 18 C -0.011 4.011 19 Cl -0.032 7.032 20 N -0.087 5.087 21 N -0.254 5.254 22 H 0.263 0.737 23 H 0.030 0.970 24 H 0.037 0.963 25 H 0.182 0.818 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.176 0.824 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.351 -14.745 -2.615 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.544 4.544 8 H 0.094 0.906 9 C 0.021 3.979 10 C -0.096 4.096 11 C -0.231 4.231 12 N -0.100 5.100 13 C 0.073 3.927 14 C -0.332 4.332 15 S 0.422 5.578 16 C -0.331 4.331 17 C -0.164 4.164 18 C -0.052 4.052 19 Cl -0.003 7.003 20 N -0.066 5.066 21 N -0.122 5.122 22 H 0.073 0.927 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.199 0.801 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.193 0.807 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 21.495 -14.511 -2.110 26.020 hybrid contribution -0.160 0.287 -0.357 0.485 sum 21.334 -14.224 -2.467 25.759 Atomic orbital electron populations 1.69904 1.06231 1.26773 1.51064 1.24981 0.94763 0.98859 0.94782 0.86831 0.80486 0.83879 0.78439 1.20251 1.21257 1.18902 1.20924 0.88167 0.94844 1.50471 0.90572 1.18146 0.97748 0.84576 0.97460 1.22477 0.95827 0.99116 0.92201 1.23323 1.08285 0.85455 1.06020 1.47163 1.32198 1.09332 1.21311 1.20122 0.89710 0.91471 0.91425 1.24226 1.00715 1.01382 1.06859 1.84409 1.07810 1.30005 1.35563 1.25643 1.03588 0.99451 1.04392 1.19950 0.92144 1.02853 1.01403 1.19835 0.90656 0.95658 0.99030 1.98404 1.31189 1.73298 1.97395 1.78320 1.06092 1.21147 1.01068 1.75136 1.17686 0.96000 1.23370 0.92712 0.95157 0.94473 0.80058 0.86845 0.86709 0.80704 0.82919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.28 13.96 55.43 0.77 -27.51 15 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 15 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 15 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 15 7 C -0.51 -14.88 9.64 -34.44 -0.33 -15.21 15 8 H 0.08 2.51 7.98 -52.49 -0.42 2.09 15 9 C 0.06 1.46 4.62 -29.03 -0.13 1.33 15 10 C 0.04 0.91 6.44 -82.78 -0.53 0.38 15 11 C -0.08 -1.44 11.49 -17.05 -0.20 -1.64 15 12 N -0.30 -4.99 3.43 -62.44 -0.21 -5.21 15 13 C 0.20 2.20 6.64 -5.19 -0.03 2.16 15 14 C -0.21 -2.35 5.88 -35.99 -0.21 -2.56 15 15 S 0.16 1.42 23.33 -107.50 -2.51 -1.09 15 16 C -0.19 -1.53 11.23 29.04 0.33 -1.21 15 17 C -0.13 -1.23 10.07 -41.18 -0.41 -1.64 15 18 C -0.01 -0.12 6.27 -41.17 -0.26 -0.38 15 19 Cl -0.03 -0.38 28.16 -51.86 -1.46 -1.84 15 20 N -0.09 -1.78 12.92 60.35 0.78 -1.00 15 21 N -0.25 -6.11 12.40 33.29 0.41 -5.69 15 22 H 0.26 7.68 8.31 -40.82 -0.34 7.34 15 23 H 0.03 0.68 7.56 -51.93 -0.39 0.28 15 24 H 0.04 0.92 7.19 -51.93 -0.37 0.55 15 25 H 0.18 2.37 8.06 -52.49 -0.42 1.94 15 26 H 0.11 1.18 7.51 -51.93 -0.39 0.79 15 27 H 0.11 0.88 8.07 -51.93 -0.42 0.46 15 28 H 0.18 0.87 8.06 -52.49 -0.42 0.44 15 29 H 0.15 1.12 8.06 -52.49 -0.42 0.70 15 LS Contribution 290.96 15.07 4.38 4.38 Total: -1.00 -35.18 290.96 -6.82 -42.00 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: -2.43 Total: -3.93 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -1.89 Total: -16.88 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 1.75 Total: -39.41 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.51 Total: -1.09 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.46 Total: -1.84 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.18 -6.82 -42.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603223123.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.378 kcal (2) G-P(sol) polarization free energy of solvation -35.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds