Wall clock time and date at job start Tue Mar 31 2020 05:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31379 * 1 3 3 Si 1.86809 * 120.00193 * 2 1 4 4 H 1.48498 * 109.47230 * 239.99980 * 3 2 1 5 5 H 1.48502 * 109.46813 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46943 * 120.00027 * 3 2 1 7 7 C 1.39022 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99931 * 179.97438 * 7 2 1 9 9 N 1.36895 * 119.99731 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00072 * 180.02562 * 9 7 2 11 11 O 1.21619 * 120.00029 * 359.97438 * 10 9 7 12 12 C 1.47496 * 120.00188 * 180.02562 * 10 9 7 13 13 C 1.39783 * 120.10133 * 359.96803 * 12 10 9 14 14 C 1.37801 * 119.94624 * 180.08723 * 13 12 10 15 15 Cl 1.73594 * 119.87238 * 180.02562 * 14 13 12 16 16 C 1.39122 * 120.25341 * 0.02562 * 14 13 12 17 17 C 1.39228 * 120.05333 * 359.85388 * 16 14 13 18 18 C 1.38301 * 119.97746 * 0.19165 * 17 16 14 19 19 O 1.36155 * 120.75985 * 180.21384 * 17 16 14 20 20 C 1.43170 * 116.70162 * 342.74676 * 19 17 16 21 21 C 1.53476 * 108.22525 * 46.21431 * 20 19 17 22 22 O 1.35996 * 119.23104 * 179.65758 * 16 14 13 23 23 H 0.97001 * 119.99336 * 359.97438 * 1 2 3 24 24 H 0.97004 * 120.00399 * 359.97438 * 9 7 2 25 25 H 1.08003 * 120.02727 * 0.06917 * 13 12 10 26 26 H 1.07999 * 120.01525 * 179.90378 * 18 17 16 27 27 H 1.08999 * 109.71479 * 165.90141 * 20 19 17 28 28 H 1.09005 * 109.71040 * 286.53346 * 20 19 17 29 29 H 1.09000 * 109.70012 * 180.51210 * 21 20 19 30 30 H 1.08998 * 109.74232 * 59.91341 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6178 0.0000 4 1 3.1016 1.6964 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1017 1.6964 1.2126 7 6 2.0089 -1.2040 0.0005 8 1 3.0889 -1.2039 0.0001 9 7 1.3244 -2.3895 0.0005 10 6 1.9982 -3.5568 0.0016 11 8 3.2144 -3.5568 0.0021 12 6 1.2607 -4.8341 0.0010 13 6 -0.1371 -4.8365 0.0001 14 6 -0.8229 -6.0318 0.0013 15 17 -2.5588 -6.0326 -0.0005 16 6 -0.1294 -7.2378 0.0041 17 6 1.2629 -7.2415 0.0025 18 6 1.9571 -6.0454 0.0022 19 8 1.9561 -8.4134 0.0009 20 6 1.2328 -9.5893 0.3801 21 6 -0.1107 -9.5866 -0.3618 22 8 -0.8271 -8.4051 0.0124 23 1 -0.4849 0.8401 0.0004 24 1 0.3544 -2.3895 0.0005 25 1 -0.6792 -3.9024 -0.0014 26 1 3.0371 -6.0476 0.0026 27 1 1.8031 -10.4765 0.1049 28 1 1.0586 -9.5827 1.4561 29 1 -0.6862 -10.4692 -0.0829 30 1 0.0629 -9.5859 -1.4379 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701281351.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:12 Heat of formation + Delta-G solvation = -88.460684 kcal Electronic energy + Delta-G solvation = -19414.118100 eV Core-core repulsion = 16008.106166 eV Total energy + Delta-G solvation = -3406.011934 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.23976 -38.79699 -37.39398 -36.98017 -35.95272 -34.14962 -31.75660 -30.99601 -30.22906 -28.59591 -25.51208 -24.75686 -22.69284 -21.68865 -19.68383 -18.76578 -18.02582 -17.44632 -17.31532 -15.76084 -15.42181 -15.20748 -14.88837 -14.57776 -14.36485 -14.19797 -13.76818 -13.70388 -13.38765 -13.05475 -12.49341 -12.00163 -11.76712 -11.67670 -11.22744 -11.12783 -10.86162 -10.63907 -10.54969 -10.49536 -10.34763 -9.65548 -8.61246 -8.35272 -8.17456 -8.01035 -6.62223 -3.94174 1.04876 1.31250 2.23269 2.90365 3.10172 3.12979 3.19054 3.23410 3.42375 4.04485 4.10513 4.33793 4.64251 4.67070 4.70720 4.80080 5.03300 5.22184 5.27701 5.32405 5.45830 5.56716 5.80778 6.12593 6.25068 6.53105 6.64713 6.82977 7.34152 7.37181 7.88493 8.42603 8.98986 9.33359 9.89143 10.53997 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.026171 B = 0.004591 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.630881 B = 6098.071532 C = 7133.133039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.025 3.975 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.294 4.294 8 H 0.110 0.890 9 N -0.536 5.536 10 C 0.465 3.535 11 O -0.594 6.594 12 C -0.074 4.074 13 C -0.093 4.093 14 C -0.030 4.030 15 Cl -0.057 7.057 16 C 0.052 3.948 17 C 0.055 3.945 18 C -0.067 4.067 19 O -0.302 6.302 20 C 0.020 3.980 21 C 0.020 3.980 22 O -0.297 6.297 23 H 0.278 0.722 24 H 0.394 0.606 25 H 0.147 0.853 26 H 0.151 0.849 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.185 -16.239 0.009 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.179 4.179 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.424 4.424 8 H 0.128 0.872 9 N -0.170 5.170 10 C 0.253 3.747 11 O -0.481 6.481 12 C -0.079 4.079 13 C -0.113 4.113 14 C -0.058 4.058 15 Cl -0.028 7.028 16 C 0.005 3.995 17 C 0.010 3.990 18 C -0.087 4.087 19 O -0.216 6.216 20 C -0.056 4.056 21 C -0.056 4.056 22 O -0.211 6.211 23 H 0.088 0.912 24 H 0.230 0.770 25 H 0.165 0.835 26 H 0.168 0.832 27 H 0.139 0.861 28 H 0.096 0.904 29 H 0.139 0.861 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.696 -16.078 0.009 16.498 hybrid contribution -0.491 0.513 0.001 0.710 sum -4.187 -15.566 0.010 16.119 Atomic orbital electron populations 1.69589 1.06175 1.29095 1.47472 1.25423 0.95716 1.00221 0.96549 0.85809 0.78823 0.79665 0.79388 1.19548 1.20714 1.19552 1.19834 0.93827 0.81988 1.46715 0.87240 1.41913 1.09572 1.04728 1.60790 1.17357 0.87386 0.82813 0.87099 1.90622 1.12934 1.86722 1.57845 1.20010 0.92018 0.94824 1.01008 1.21149 0.93532 0.96614 1.00035 1.19889 0.85058 0.91585 1.09234 1.98351 1.08542 1.98858 1.97034 1.18519 0.89134 0.85967 1.05846 1.18522 0.88324 0.86970 1.05202 1.20523 1.01529 0.87604 0.99093 1.86365 1.37151 1.13492 1.84629 1.23628 0.93842 0.88011 1.00131 1.23635 0.94010 0.87700 1.00214 1.86328 1.37158 1.13301 1.84297 0.91186 0.77041 0.83509 0.83165 0.86122 0.90444 0.86115 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.04 13.05 55.50 0.72 -22.32 16 2 C 0.03 0.65 5.50 -17.45 -0.10 0.55 16 3 Si 0.94 20.14 29.55 -169.99 -5.02 15.12 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.29 -7.97 9.68 -15.00 -0.15 -8.11 16 8 H 0.11 3.08 7.15 -52.49 -0.38 2.70 16 9 N -0.54 -13.56 5.23 -11.94 -0.06 -13.62 16 10 C 0.47 11.38 7.71 -12.49 -0.10 11.28 16 11 O -0.59 -16.36 15.91 5.26 0.08 -16.27 16 12 C -0.07 -1.49 5.87 -104.99 -0.62 -2.11 16 13 C -0.09 -1.67 9.30 -39.16 -0.36 -2.04 16 14 C -0.03 -0.50 6.32 -39.41 -0.25 -0.75 16 15 Cl -0.06 -0.85 28.44 -51.86 -1.47 -2.32 16 16 C 0.05 0.82 6.50 -38.89 -0.25 0.57 16 17 C 0.05 0.89 6.48 -39.19 -0.25 0.63 16 18 C -0.07 -1.24 9.50 -39.00 -0.37 -1.61 16 19 O -0.30 -4.22 10.42 -32.99 -0.34 -4.56 16 20 C 0.02 0.18 7.26 37.40 0.27 0.45 16 21 C 0.02 0.18 7.26 37.40 0.27 0.45 16 22 O -0.30 -4.02 9.81 -32.49 -0.32 -4.34 16 23 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 24 H 0.39 9.43 5.92 -40.82 -0.24 9.19 16 25 H 0.15 2.59 6.39 -52.48 -0.34 2.25 16 26 H 0.15 2.81 7.64 -52.49 -0.40 2.41 16 27 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 283.11 15.07 4.27 4.27 Total: -1.00 -30.68 283.11 -6.23 -36.91 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -2.18 Total: 7.81 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.90 Total: -0.67 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.66 Total: -35.94 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.58 Total: -25.17 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.47 Total: -2.32 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.68 -6.23 -36.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701281351.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.549 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds