Wall clock time and date at job start Tue Mar 31 2020 05:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86802 * 120.00525 * 2 1 4 4 H 1.48505 * 109.46732 * 269.99916 * 3 2 1 5 5 H 1.48497 * 109.46833 * 29.99757 * 3 2 1 6 6 H 1.48495 * 109.47185 * 149.99673 * 3 2 1 7 7 C 1.38956 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99890 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99949 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99884 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99917 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.47392 * 179.97438 * 12 10 9 14 14 C 1.34709 * 117.00379 * 179.97438 * 13 12 10 15 15 O 1.21476 * 119.99640 * 0.02562 * 14 13 12 16 16 C 1.47728 * 119.99928 * 179.97438 * 14 13 12 17 17 C 1.39641 * 120.14381 * 359.97438 * 16 14 13 18 18 C 1.37929 * 119.87450 * 180.02562 * 17 16 14 19 19 C 1.38374 * 120.16472 * 359.97438 * 18 17 16 20 20 C 1.38450 * 120.29057 * 0.04470 * 19 18 17 21 21 Cl 1.73595 * 119.94127 * 179.97438 * 20 19 18 22 22 C 1.38097 * 120.12351 * 359.95812 * 20 19 18 23 23 H 0.97006 * 119.99857 * 0.02562 * 1 2 3 24 24 H 0.97007 * 120.00051 * 359.97438 * 9 7 2 25 25 H 1.09000 * 109.47228 * 59.99720 * 12 10 9 26 26 H 1.09003 * 109.47452 * 300.00193 * 12 10 9 27 27 H 1.08003 * 120.06802 * 359.97438 * 17 16 14 28 28 H 1.07999 * 119.91782 * 179.97438 * 18 17 16 29 29 H 1.08001 * 119.85428 * 180.02562 * 19 18 17 30 30 H 1.07994 * 120.08307 * 180.29852 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4002 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2099 -3.5579 0.0001 12 6 1.2435 -4.8629 0.0011 13 8 2.1869 -5.9667 0.0004 14 6 1.6720 -7.2115 0.0013 15 8 0.4677 -7.3705 0.0022 16 6 2.5719 -8.3830 0.0001 17 6 3.9567 -8.2036 -0.0026 18 6 4.7917 -9.3014 -0.0043 19 6 4.2605 -10.5791 -0.0028 20 6 2.8885 -10.7649 -0.0005 21 17 2.2318 -12.3718 0.0007 22 6 2.0414 -9.6743 0.0011 23 1 -0.4850 0.8401 -0.0004 24 1 0.3532 -2.3906 0.0005 25 1 0.6165 -4.9208 -0.8886 26 1 0.6171 -4.9205 0.8913 27 1 4.3732 -7.2071 -0.0042 28 1 5.8629 -9.1634 -0.0068 29 1 4.9190 -11.4351 -0.0037 30 1 0.9713 -9.8200 0.0078 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731234831.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:38 Heat of formation + Delta-G solvation = -103.672131 kcal Electronic energy + Delta-G solvation = -18469.236725 eV Core-core repulsion = 15062.565174 eV Total energy + Delta-G solvation = -3406.671552 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.60637 -39.14443 -38.09003 -36.76818 -36.14703 -34.03162 -31.80709 -31.39732 -31.14212 -28.42914 -25.08553 -24.10143 -22.92622 -21.03898 -19.62159 -18.34159 -18.10325 -17.06777 -16.37771 -16.32072 -15.74850 -15.41001 -15.09990 -14.51779 -14.26030 -14.12229 -13.97345 -13.64916 -13.08438 -12.40204 -12.29243 -12.07643 -11.78452 -11.77776 -11.64384 -11.29811 -11.15399 -10.58072 -10.48327 -10.45755 -10.31607 -9.63115 -9.47348 -9.12425 -8.56164 -8.11058 -6.52328 -3.94460 0.34969 0.83281 1.70437 2.38188 2.61004 3.11588 3.22139 3.28035 3.39936 3.70762 4.07743 4.38566 4.45275 4.66047 4.84134 4.88943 4.99643 5.12654 5.21475 5.43333 5.50089 5.65681 5.74584 5.94092 5.95487 6.02807 6.31483 6.49685 7.45526 7.73292 7.92091 8.45481 9.04468 9.36463 9.85968 10.64854 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.050505 B = 0.002813 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.267061 B = 9952.767578 C =10491.889848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.577 6.577 12 C 0.061 3.939 13 O -0.319 6.319 14 C 0.505 3.495 15 O -0.506 6.506 16 C -0.106 4.106 17 C -0.052 4.052 18 C -0.119 4.119 19 C -0.079 4.079 20 C -0.051 4.051 21 Cl -0.064 7.064 22 C -0.049 4.049 23 H 0.274 0.726 24 H 0.395 0.605 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.670 -19.905 0.006 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.223 3.777 11 O -0.461 6.461 12 C -0.016 4.016 13 O -0.233 6.233 14 C 0.349 3.651 15 O -0.396 6.396 16 C -0.108 4.108 17 C -0.071 4.071 18 C -0.138 4.138 19 C -0.097 4.097 20 C -0.078 4.078 21 Cl -0.035 7.035 22 C -0.068 4.068 23 H 0.084 0.916 24 H 0.229 0.771 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.171 0.829 28 H 0.161 0.839 29 H 0.157 0.843 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.926 -19.878 0.013 20.479 hybrid contribution -0.564 0.713 -0.011 0.909 sum 4.362 -19.164 0.002 19.654 Atomic orbital electron populations 1.69613 1.06020 1.28536 1.49530 1.25321 0.95689 0.99898 0.96836 0.85793 0.79232 0.80388 0.78516 1.20239 1.20795 1.19260 1.19725 0.93480 0.81722 1.48267 0.87585 1.41702 1.09403 1.04075 1.63691 1.19274 0.88320 0.84015 0.86091 1.90554 1.13377 1.86772 1.55375 1.22806 0.90790 0.84281 1.03736 1.86571 1.40072 1.13755 1.82938 1.21044 0.87011 0.83798 0.73221 1.90836 1.15919 1.86958 1.45929 1.19039 0.93319 0.90663 1.07775 1.21823 0.91848 1.01101 0.92295 1.21197 1.00881 0.91163 1.00517 1.21354 0.93010 0.98585 0.96800 1.20702 0.93525 0.86300 1.07263 1.98383 1.86259 1.21802 1.97039 1.21128 1.01113 0.89428 0.95089 0.91586 0.77122 0.89327 0.89318 0.82898 0.83912 0.84301 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.86 13.05 55.50 0.72 -23.13 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.11 3.01 7.16 -52.48 -0.38 2.63 16 9 N -0.55 -13.75 5.29 -10.96 -0.06 -13.81 16 10 C 0.44 10.36 7.86 -10.99 -0.09 10.27 16 11 O -0.58 -15.62 16.08 -14.11 -0.23 -15.84 16 12 C 0.06 1.15 5.95 36.01 0.21 1.36 16 13 O -0.32 -5.81 9.01 -47.20 -0.43 -6.23 16 14 C 0.51 8.11 7.90 34.61 0.27 8.38 16 15 O -0.51 -8.90 16.14 -19.25 -0.31 -9.21 16 16 C -0.11 -1.38 5.87 -104.99 -0.62 -1.99 16 17 C -0.05 -0.58 9.62 -39.17 -0.38 -0.96 16 18 C -0.12 -1.00 10.03 -39.64 -0.40 -1.40 16 19 C -0.08 -0.64 9.82 -39.45 -0.39 -1.03 16 20 C -0.05 -0.50 6.31 -39.55 -0.25 -0.75 16 21 Cl -0.06 -0.57 28.95 -51.86 -1.50 -2.07 16 22 C -0.05 -0.56 9.38 -39.13 -0.37 -0.92 16 23 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 24 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 25 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 26 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 27 H 0.15 1.78 7.61 -52.48 -0.40 1.38 16 28 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 30 H 0.15 1.67 7.65 -52.49 -0.40 1.27 16 LS Contribution 298.32 15.07 4.50 4.50 Total: -1.00 -31.26 298.32 -6.88 -38.15 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -2.32 Total: 7.07 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -2.23 Total: 5.13 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.67 Total: -36.94 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.96 Total: -31.29 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.26 -6.88 -38.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731234831.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.527 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds