Wall clock time and date at job start Tue Mar 31 2020 05:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86802 * 120.00525 * 2 1 4 4 H 1.48505 * 109.46732 * 269.99916 * 3 2 1 5 5 H 1.48497 * 109.46833 * 29.99757 * 3 2 1 6 6 H 1.48495 * 109.47185 * 149.99673 * 3 2 1 7 7 C 1.38956 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99890 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99949 * 179.97438 * 9 7 2 11 11 O 1.21286 * 119.99884 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99917 * 179.97438 * 10 9 7 13 13 O 1.45200 * 109.47392 * 179.97438 * 12 10 9 14 14 C 1.34709 * 117.00379 * 179.97438 * 13 12 10 15 15 O 1.21476 * 119.99640 * 0.02562 * 14 13 12 16 16 C 1.47728 * 119.99928 * 179.97438 * 14 13 12 17 17 C 1.39641 * 120.14381 * 359.97438 * 16 14 13 18 18 C 1.37929 * 119.87450 * 180.02562 * 17 16 14 19 19 C 1.38374 * 120.16472 * 359.97438 * 18 17 16 20 20 C 1.38450 * 120.29057 * 0.04470 * 19 18 17 21 21 Cl 1.73595 * 119.94127 * 179.97438 * 20 19 18 22 22 C 1.38097 * 120.12351 * 359.95812 * 20 19 18 23 23 H 0.97006 * 119.99857 * 0.02562 * 1 2 3 24 24 H 0.97007 * 120.00051 * 359.97438 * 9 7 2 25 25 H 1.09000 * 109.47228 * 59.99720 * 12 10 9 26 26 H 1.09003 * 109.47452 * 300.00193 * 12 10 9 27 27 H 1.08003 * 120.06802 * 359.97438 * 17 16 14 28 28 H 1.07999 * 119.91782 * 179.97438 * 18 17 16 29 29 H 1.08001 * 119.85428 * 180.02562 * 19 18 17 30 30 H 1.07994 * 120.08307 * 180.29852 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4002 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2099 -3.5579 0.0001 12 6 1.2435 -4.8629 0.0011 13 8 2.1869 -5.9667 0.0004 14 6 1.6720 -7.2115 0.0013 15 8 0.4677 -7.3705 0.0022 16 6 2.5719 -8.3830 0.0001 17 6 3.9567 -8.2036 -0.0026 18 6 4.7917 -9.3014 -0.0043 19 6 4.2605 -10.5791 -0.0028 20 6 2.8885 -10.7649 -0.0005 21 17 2.2318 -12.3718 0.0007 22 6 2.0414 -9.6743 0.0011 23 1 -0.4850 0.8401 -0.0004 24 1 0.3532 -2.3906 0.0005 25 1 0.6165 -4.9208 -0.8886 26 1 0.6171 -4.9205 0.8913 27 1 4.3732 -7.2071 -0.0042 28 1 5.8629 -9.1634 -0.0068 29 1 4.9190 -11.4351 -0.0037 30 1 0.9713 -9.8200 0.0078 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731234831.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:37 Heat of formation + Delta-G solvation = -122.150879 kcal Electronic energy + Delta-G solvation = -18470.038024 eV Core-core repulsion = 15062.565174 eV Total energy + Delta-G solvation = -3407.472850 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.84413 -40.31628 -39.72344 -37.60488 -37.46968 -36.04195 -33.43574 -32.66605 -31.95302 -30.02095 -26.79486 -25.36253 -23.72950 -22.16596 -21.45527 -20.08776 -19.45740 -18.30191 -17.78471 -17.71661 -17.05461 -16.59381 -16.28109 -15.99196 -15.81115 -15.70237 -14.84569 -14.69902 -14.61348 -13.96059 -13.75166 -13.56195 -13.00008 -12.94386 -12.60546 -12.57950 -12.47942 -12.12314 -12.09775 -11.93756 -11.76438 -11.58227 -10.53108 -10.27524 -10.12736 -9.91266 -8.52948 -6.03615 -0.54994 0.04688 0.90091 1.29420 1.32932 1.36073 1.44791 1.57498 1.85801 2.29125 2.52985 2.97536 3.12730 3.48574 3.70838 3.91757 3.95229 4.01728 4.12568 4.18536 4.20449 4.41937 4.71345 4.95517 5.11005 5.14597 5.23866 5.36632 5.56604 5.87926 6.41313 6.52178 7.01955 7.38680 7.91615 8.64117 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.050505 B = 0.002813 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.267061 B = 9952.767578 C =10491.889848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.557 5.557 10 C 0.438 3.562 11 O -0.615 6.615 12 C 0.071 3.929 13 O -0.334 6.334 14 C 0.506 3.494 15 O -0.528 6.528 16 C -0.129 4.129 17 C -0.060 4.060 18 C -0.108 4.108 19 C -0.062 4.062 20 C -0.055 4.055 21 Cl -0.056 7.056 22 C -0.054 4.054 23 H 0.281 0.719 24 H 0.400 0.600 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.142 0.858 28 H 0.176 0.824 29 H 0.173 0.827 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.622 -21.000 -0.010 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.502 6.502 12 C -0.006 4.006 13 O -0.249 6.249 14 C 0.353 3.647 15 O -0.419 6.419 16 C -0.130 4.130 17 C -0.079 4.079 18 C -0.125 4.125 19 C -0.081 4.081 20 C -0.082 4.082 21 Cl -0.027 7.027 22 C -0.073 4.073 23 H 0.090 0.910 24 H 0.234 0.766 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.160 0.840 28 H 0.194 0.806 29 H 0.190 0.810 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.848 -20.993 -0.005 21.792 hybrid contribution -0.833 0.920 -0.006 1.241 sum 5.015 -20.073 -0.011 20.690 Atomic orbital electron populations 1.69673 1.07001 1.29755 1.49157 1.26141 0.96577 1.02639 0.95638 0.84848 0.77921 0.76301 0.78808 1.19438 1.19495 1.19430 1.19731 0.92978 0.83301 1.50633 0.89627 1.41739 1.09585 1.04182 1.63976 1.20013 0.88075 0.85244 0.84219 1.90519 1.15294 1.87648 1.56738 1.22583 0.90153 0.82317 1.05566 1.86568 1.40336 1.14489 1.83492 1.21597 0.87357 0.83575 0.72215 1.90812 1.16860 1.86992 1.47228 1.18939 0.93619 0.89766 1.10724 1.21852 0.91402 1.01770 0.92827 1.21533 1.02133 0.90221 0.98649 1.21762 0.92595 0.99565 0.94156 1.20815 0.94145 0.86179 1.07040 1.98390 1.86348 1.20934 1.96983 1.21101 1.01223 0.89425 0.95565 0.90955 0.76561 0.87416 0.87409 0.83967 0.80629 0.80988 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.46 13.05 21.66 0.28 -48.18 16 2 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 3 Si 1.00 41.66 29.55 68.60 2.03 43.69 16 4 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.34 -18.77 9.68 84.04 0.81 -17.96 16 8 H 0.09 5.03 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.38 5.29 -306.98 -1.62 -30.00 16 10 C 0.44 21.15 7.86 87.66 0.69 21.84 16 11 O -0.62 -34.32 16.08 15.75 0.25 -34.07 16 12 C 0.07 2.67 5.95 71.24 0.42 3.09 16 13 O -0.33 -12.35 9.01 -49.81 -0.45 -12.79 16 14 C 0.51 16.48 7.90 70.33 0.56 17.04 16 15 O -0.53 -18.74 16.14 19.92 0.32 -18.42 16 16 C -0.13 -3.31 5.87 -20.10 -0.12 -3.43 16 17 C -0.06 -1.29 9.62 22.54 0.22 -1.07 16 18 C -0.11 -1.50 10.03 22.23 0.22 -1.27 16 19 C -0.06 -0.80 9.82 22.35 0.22 -0.58 16 20 C -0.06 -0.96 6.31 22.29 0.14 -0.82 16 21 Cl -0.06 -0.88 28.95 -2.72 -0.08 -0.96 16 22 C -0.05 -1.20 9.38 22.56 0.21 -0.99 16 23 H 0.28 13.85 8.31 -92.70 -0.77 13.08 16 24 H 0.40 19.22 7.90 -92.70 -0.73 18.49 16 25 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 26 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 27 H 0.14 3.33 7.61 -2.91 -0.02 3.31 16 28 H 0.18 1.30 8.06 -2.91 -0.02 1.27 16 29 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 30 H 0.14 3.23 7.65 -2.91 -0.02 3.21 16 Total: -1.00 -67.92 298.32 5.04 -62.88 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.47 Total: 22.02 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 3.84 Total: 15.84 kcal Atomic # 7 Polarization: -76.84 SS G_CDS: -1.34 Total: -78.18 kcal Atomic # 8 Polarization: -65.40 SS G_CDS: 0.13 Total: -65.28 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.96 kcal Total: -67.92 5.04 -62.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731234831.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.274 kcal (2) G-P(sol) polarization free energy of solvation -67.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds