Wall clock time and date at job start Tue Mar 31 2020 05:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86793 * 119.99696 * 2 1 4 4 H 1.48506 * 109.47236 * 239.99778 * 3 2 1 5 5 H 1.48498 * 109.47516 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47429 * 119.99760 * 3 2 1 7 7 C 1.38952 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99593 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99927 * 0.02562 * 7 2 1 10 10 C 1.34770 * 119.99944 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99947 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00208 * 179.97438 * 10 9 7 13 13 O 1.45199 * 109.47124 * 179.97438 * 12 10 9 14 14 C 1.34724 * 116.99679 * 179.97438 * 13 12 10 15 15 O 1.21477 * 120.00240 * 0.02562 * 14 13 12 16 16 C 1.47661 * 119.99613 * 180.02562 * 14 13 12 17 17 C 1.39666 * 120.13814 * 0.24974 * 16 14 13 18 18 C 1.37881 * 119.86222 * 180.23321 * 17 16 14 19 19 C 1.38531 * 120.13454 * 359.51510 * 18 17 16 20 20 Cl 1.73598 * 119.86114 * 180.27825 * 19 18 17 21 21 C 1.38516 * 120.27481 * 0.25919 * 19 18 17 22 22 C 1.37884 * 120.13927 * 359.97438 * 21 19 18 23 23 H 0.96996 * 120.00573 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99946 * 359.97438 * 9 7 2 25 25 H 1.09005 * 109.47016 * 59.99881 * 12 10 9 26 26 H 1.09000 * 109.46960 * 300.00117 * 12 10 9 27 27 H 1.08004 * 120.07234 * 0.02562 * 17 16 14 28 28 H 1.08002 * 119.93580 * 179.79899 * 18 17 16 29 29 H 1.08000 * 119.93155 * 180.02562 * 21 19 18 30 30 H 1.07993 * 120.07063 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5577 0.0030 12 6 1.2439 -4.8629 0.0022 13 8 2.1875 -5.9665 0.0027 14 6 1.6726 -7.2115 0.0038 15 8 0.4683 -7.3707 0.0038 16 6 2.5721 -8.3824 0.0049 17 6 3.9572 -8.2027 0.0101 18 6 4.7919 -9.3001 0.0062 19 6 4.2594 -10.5790 0.0074 20 17 5.3169 -11.9556 0.0099 21 6 2.8866 -10.7638 0.0070 22 6 2.0414 -9.6744 0.0060 23 1 -0.4851 0.8400 -0.0004 24 1 0.3535 -2.3906 0.0005 25 1 0.6175 -4.9213 -0.8881 26 1 0.6169 -4.9201 0.8919 27 1 4.3736 -7.2061 0.0137 28 1 5.8631 -9.1625 0.0070 29 1 2.4774 -11.7633 0.0083 30 1 0.9712 -9.8197 0.0061 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731235857.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:45 Heat of formation + Delta-G solvation = -122.272591 kcal Electronic energy + Delta-G solvation = -18432.756400 eV Core-core repulsion = 15025.278272 eV Total energy + Delta-G solvation = -3407.478128 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.81973 -40.31302 -39.72516 -37.65910 -37.41813 -36.03855 -33.43166 -32.47536 -32.21819 -29.98662 -26.76014 -25.21988 -23.90233 -22.10303 -21.44799 -20.08480 -19.38386 -18.33999 -17.80810 -17.76032 -17.26189 -16.55936 -16.27890 -15.83798 -15.79161 -15.56006 -14.76647 -14.61575 -14.61206 -13.96568 -13.79670 -13.55738 -13.27553 -12.93782 -12.64875 -12.57958 -12.49116 -12.13102 -11.91985 -11.91659 -11.81179 -11.57387 -10.52575 -10.22734 -10.12540 -9.97483 -8.52648 -6.03415 -0.63068 0.15890 0.95182 1.26889 1.27269 1.37649 1.44279 1.55450 1.86479 2.29248 2.52320 2.99508 3.12942 3.52267 3.66396 3.77541 4.00104 4.06713 4.14014 4.17490 4.21337 4.50514 4.85056 4.88652 5.02303 5.15357 5.22085 5.36552 5.52323 5.88154 6.42587 6.53897 7.02153 7.39075 7.92260 8.64147 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.042729 B = 0.002792 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.141108 B =10027.463982 C =10667.459984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.437 3.563 11 O -0.616 6.616 12 C 0.071 3.929 13 O -0.337 6.337 14 C 0.506 3.494 15 O -0.526 6.526 16 C -0.137 4.137 17 C -0.052 4.052 18 C -0.121 4.121 19 C -0.004 4.004 20 Cl -0.051 7.051 21 C -0.115 4.115 22 C -0.040 4.040 23 H 0.281 0.719 24 H 0.400 0.600 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.144 0.856 28 H 0.161 0.839 29 H 0.171 0.829 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.507 -21.226 0.021 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.006 4.006 13 O -0.252 6.252 14 C 0.352 3.648 15 O -0.417 6.417 16 C -0.138 4.138 17 C -0.070 4.070 18 C -0.139 4.139 19 C -0.031 4.031 20 Cl -0.022 7.022 21 C -0.134 4.134 22 C -0.059 4.059 23 H 0.091 0.909 24 H 0.235 0.765 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.162 0.838 28 H 0.179 0.821 29 H 0.189 0.811 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.894 -21.197 0.022 21.755 hybrid contribution -0.355 0.986 -0.001 1.048 sum 4.539 -20.211 0.021 20.714 Atomic orbital electron populations 1.69663 1.06965 1.29827 1.49084 1.26130 0.96580 1.02607 0.95627 0.84917 0.77748 0.76107 0.79163 1.19462 1.19425 1.19455 1.19691 0.92975 0.83347 1.50748 0.89679 1.41730 1.09583 1.04170 1.63979 1.20053 0.88085 0.85309 0.84195 1.90522 1.15359 1.87673 1.56763 1.22572 0.90114 0.82286 1.05591 1.86581 1.40433 1.14655 1.83517 1.21626 0.87432 0.83498 0.72223 1.90808 1.16697 1.86958 1.47200 1.19251 0.93234 0.90938 1.10395 1.21592 0.91594 1.00567 0.93257 1.21270 1.02039 0.89680 1.00946 1.21441 0.91962 0.89058 1.00636 1.98402 1.65478 1.41917 1.96415 1.21268 0.90516 1.00771 1.00817 1.21375 1.01834 0.89181 0.93469 0.90938 0.76538 0.87361 0.87351 0.83843 0.82107 0.81133 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.37 13.05 21.66 0.28 -48.08 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 3 Si 1.00 41.71 29.55 68.60 2.03 43.73 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.34 -18.85 9.68 84.04 0.81 -18.04 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.33 5.29 -306.99 -1.62 -29.96 16 10 C 0.44 21.09 7.86 87.66 0.69 21.78 16 11 O -0.62 -34.50 16.08 15.73 0.25 -34.25 16 12 C 0.07 2.66 5.95 71.24 0.42 3.09 16 13 O -0.34 -12.35 9.01 -49.95 -0.45 -12.80 16 14 C 0.51 15.94 7.90 70.31 0.56 16.49 16 15 O -0.53 -17.79 16.14 19.91 0.32 -17.47 16 16 C -0.14 -3.38 5.87 -20.10 -0.12 -3.50 16 17 C -0.05 -1.16 9.61 22.53 0.22 -0.94 16 18 C -0.12 -2.11 9.81 22.26 0.22 -1.89 16 19 C 0.00 -0.06 6.33 22.41 0.14 0.08 16 20 Cl -0.05 -0.72 28.95 -2.72 -0.08 -0.80 16 21 C -0.12 -1.69 9.81 22.25 0.22 -1.47 16 22 C -0.04 -0.76 9.59 22.53 0.22 -0.55 16 23 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 24 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 25 H 0.11 3.60 8.14 -2.38 -0.02 3.58 16 26 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 27 H 0.14 3.54 7.61 -2.91 -0.02 3.51 16 28 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 29 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 30 H 0.16 2.67 7.65 -2.91 -0.02 2.64 16 Total: -1.00 -66.84 298.31 5.04 -61.80 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.47 Total: 22.76 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 3.84 Total: 15.06 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -1.34 Total: -78.04 kcal Atomic # 8 Polarization: -64.64 SS G_CDS: 0.12 Total: -64.52 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -66.84 5.04 -61.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235857.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.477 kcal (2) G-P(sol) polarization free energy of solvation -66.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds