Wall clock time and date at job start Tue Mar 31 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99985 * 2 1 4 4 H 1.48494 * 109.46820 * 270.00005 * 3 2 1 5 5 H 1.48494 * 109.47044 * 30.00094 * 3 2 1 6 6 H 1.48504 * 109.47040 * 150.00224 * 3 2 1 7 7 C 1.38952 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99897 * 359.97438 * 7 2 1 9 9 N 1.37095 * 119.99912 * 179.97438 * 7 2 1 10 10 C 1.34780 * 119.99803 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99928 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99849 * 179.97438 * 10 9 7 13 13 O 1.45203 * 109.46913 * 180.02562 * 12 10 9 14 14 C 1.34721 * 116.99758 * 180.02562 * 13 12 10 15 15 O 1.21477 * 120.00096 * 359.97438 * 14 13 12 16 16 C 1.47647 * 119.99787 * 179.97438 * 14 13 12 17 17 C 1.39675 * 120.16042 * 359.97438 * 16 14 13 18 18 C 1.37883 * 119.85920 * 179.97438 * 17 16 14 19 19 C 1.38429 * 120.19076 * 359.97438 * 18 17 16 20 20 C 1.38275 * 120.32722 * 359.97438 * 19 18 17 21 21 C 1.38151 * 120.13481 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.09543 * 179.97438 * 21 20 19 23 23 H 0.96994 * 120.00185 * 359.97438 * 1 2 3 24 24 H 0.96996 * 120.00454 * 359.97438 * 9 7 2 25 25 H 1.08997 * 109.47157 * 59.99970 * 12 10 9 26 26 H 1.09003 * 109.47009 * 299.99620 * 12 10 9 27 27 H 1.07997 * 120.07582 * 359.97438 * 17 16 14 28 28 H 1.08004 * 119.90580 * 180.02562 * 18 17 16 29 29 H 1.08005 * 119.84135 * 180.02562 * 19 18 17 30 30 H 1.07994 * 119.93483 * 179.75102 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4000 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3706 -0.0022 13 8 6.0447 -3.7396 -0.0026 14 6 7.3803 -3.9161 -0.0031 15 8 8.1203 -2.9527 -0.0037 16 6 7.9446 -5.2804 -0.0029 17 6 7.0968 -6.3905 -0.0017 18 6 7.6305 -7.6618 -0.0021 19 6 9.0032 -7.8406 -0.0042 20 6 9.8497 -6.7472 -0.0065 21 6 9.3295 -5.4674 -0.0062 22 17 10.3932 -4.0954 -0.0084 23 1 -0.4850 0.8400 0.0004 24 1 3.8649 -0.3633 -0.0014 25 1 5.9247 -1.8563 0.8872 26 1 5.9233 -1.8572 -0.8928 27 1 6.0256 -6.2534 -0.0005 28 1 6.9757 -8.5207 -0.0016 29 1 9.4151 -8.8390 -0.0049 30 1 10.9196 -6.8940 -0.0041 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731236115.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:49 Heat of formation + Delta-G solvation = -86.126828 kcal Electronic energy + Delta-G solvation = -18797.904018 eV Core-core repulsion = 15391.993287 eV Total energy + Delta-G solvation = -3405.910730 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.59530 -39.13247 -38.20606 -36.64394 -36.07775 -34.06353 -31.93211 -31.75921 -31.04672 -28.59943 -24.99705 -23.96470 -22.92875 -21.05115 -19.64788 -18.62859 -18.24050 -17.10981 -16.41737 -16.38368 -15.71633 -15.38001 -15.04536 -14.70677 -14.38221 -14.15458 -13.64355 -13.50921 -12.96412 -12.41449 -12.38806 -12.22512 -12.05983 -11.80376 -11.72402 -11.43939 -11.26250 -10.64873 -10.50936 -10.06889 -9.99709 -9.67739 -9.45538 -9.08925 -8.67267 -8.29490 -6.39453 -3.92350 0.33531 0.85322 1.87995 2.43673 2.53946 2.99274 3.03923 3.12515 3.38874 3.55746 4.03873 4.26423 4.41603 4.57384 4.73543 4.89824 5.00730 5.11371 5.14143 5.35257 5.54117 5.55667 5.67308 5.77331 5.83519 6.01084 6.34483 6.45984 7.44577 7.77344 8.00569 8.47575 8.83381 9.29723 9.65210 10.72819 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.031643 B = 0.003621 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.659594 B = 7730.986897 C = 8600.502194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.122 0.878 9 N -0.579 5.579 10 C 0.448 3.552 11 O -0.558 6.558 12 C 0.060 3.940 13 O -0.320 6.320 14 C 0.498 3.502 15 O -0.490 6.490 16 C -0.115 4.115 17 C -0.045 4.045 18 C -0.130 4.130 19 C -0.076 4.076 20 C -0.128 4.128 21 C 0.016 3.984 22 Cl -0.033 7.033 23 H 0.276 0.724 24 H 0.373 0.627 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.155 0.845 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.376 -11.456 -0.024 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.219 5.219 10 C 0.233 3.767 11 O -0.440 6.440 12 C -0.018 4.018 13 O -0.235 6.235 14 C 0.342 3.658 15 O -0.378 6.378 16 C -0.117 4.117 17 C -0.064 4.064 18 C -0.148 4.148 19 C -0.094 4.094 20 C -0.147 4.147 21 C -0.011 4.011 22 Cl -0.003 7.003 23 H 0.086 0.914 24 H 0.206 0.794 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.172 0.828 28 H 0.157 0.843 29 H 0.155 0.845 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 20.029 -11.596 -0.024 23.144 hybrid contribution 0.702 1.706 0.017 1.845 sum 20.731 -9.890 -0.007 22.970 Atomic orbital electron populations 1.69610 1.05659 1.27775 1.48377 1.25035 0.95515 0.98065 0.97241 0.86681 0.79882 0.83857 0.79115 1.19392 1.19947 1.19323 1.19425 0.78668 0.96876 1.48684 0.85997 1.42029 1.07633 1.05716 1.66521 1.19178 0.86890 0.85142 0.85469 1.90596 1.69051 1.30715 1.53614 1.22763 0.95067 0.80185 1.03741 1.86574 1.22259 1.31367 1.83317 1.20990 0.81379 0.89482 0.73963 1.90909 1.60119 1.41980 1.44828 1.18962 0.91806 0.91728 1.09214 1.21710 1.01291 0.90920 0.92448 1.21325 0.95402 0.97482 1.00616 1.21412 0.93431 0.98870 0.95684 1.21035 1.01107 0.89923 1.02637 1.21077 0.89846 0.90082 1.00105 1.98425 1.63710 1.42180 1.96007 0.91381 0.79361 0.89281 0.89277 0.82772 0.84313 0.84456 0.84122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.09 13.96 55.50 0.77 -24.32 16 2 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 3 Si 0.88 19.05 27.74 -169.99 -4.71 14.33 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 7 C -0.31 -8.59 10.16 -14.93 -0.15 -8.75 16 8 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 9 N -0.58 -13.70 5.09 -10.96 -0.06 -13.76 16 10 C 0.45 10.31 7.86 -10.98 -0.09 10.23 16 11 O -0.56 -15.10 16.08 -14.12 -0.23 -15.33 16 12 C 0.06 1.08 5.95 36.01 0.21 1.29 16 13 O -0.32 -5.76 9.01 -47.23 -0.43 -6.18 16 14 C 0.50 8.02 7.89 34.57 0.27 8.29 16 15 O -0.49 -8.41 13.76 -19.25 -0.26 -8.68 16 16 C -0.12 -1.53 5.88 -104.96 -0.62 -2.14 16 17 C -0.05 -0.51 9.62 -39.17 -0.38 -0.89 16 18 C -0.13 -1.07 10.03 -39.64 -0.40 -1.47 16 19 C -0.08 -0.54 10.04 -39.50 -0.40 -0.93 16 20 C -0.13 -1.09 9.82 -39.60 -0.39 -1.48 16 21 C 0.02 0.19 6.35 -39.05 -0.25 -0.06 16 22 Cl -0.03 -0.41 26.03 -51.86 -1.35 -1.76 16 23 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 25 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 26 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 27 H 0.15 1.82 7.61 -52.49 -0.40 1.42 16 28 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 29 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 30 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 291.00 15.07 4.39 4.39 Total: -1.00 -33.19 291.00 -6.45 -39.64 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -2.30 Total: 6.43 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -2.27 Total: 5.23 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.72 Total: -38.07 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.92 Total: -30.19 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.33 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.35 Total: -1.76 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.19 -6.45 -39.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236115.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.484 kcal (2) G-P(sol) polarization free energy of solvation -33.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds