Wall clock time and date at job start Tue Mar 31 2020 05:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99985 * 2 1 4 4 H 1.48494 * 109.46820 * 270.00005 * 3 2 1 5 5 H 1.48494 * 109.47044 * 30.00094 * 3 2 1 6 6 H 1.48504 * 109.47040 * 150.00224 * 3 2 1 7 7 C 1.38952 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99897 * 359.97438 * 7 2 1 9 9 N 1.37095 * 119.99912 * 179.97438 * 7 2 1 10 10 C 1.34780 * 119.99803 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99928 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99849 * 179.97438 * 10 9 7 13 13 O 1.45203 * 109.46913 * 180.02562 * 12 10 9 14 14 C 1.34721 * 116.99758 * 180.02562 * 13 12 10 15 15 O 1.21477 * 120.00096 * 359.97438 * 14 13 12 16 16 C 1.47647 * 119.99787 * 179.97438 * 14 13 12 17 17 C 1.39675 * 120.16042 * 359.97438 * 16 14 13 18 18 C 1.37883 * 119.85920 * 179.97438 * 17 16 14 19 19 C 1.38429 * 120.19076 * 359.97438 * 18 17 16 20 20 C 1.38275 * 120.32722 * 359.97438 * 19 18 17 21 21 C 1.38151 * 120.13481 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.09543 * 179.97438 * 21 20 19 23 23 H 0.96994 * 120.00185 * 359.97438 * 1 2 3 24 24 H 0.96996 * 120.00454 * 359.97438 * 9 7 2 25 25 H 1.08997 * 109.47157 * 59.99970 * 12 10 9 26 26 H 1.09003 * 109.47009 * 299.99620 * 12 10 9 27 27 H 1.07997 * 120.07582 * 359.97438 * 17 16 14 28 28 H 1.08004 * 119.90580 * 180.02562 * 18 17 16 29 29 H 1.08005 * 119.84135 * 180.02562 * 19 18 17 30 30 H 1.07994 * 119.93483 * 179.75102 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4000 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2033 -0.0011 10 6 4.0537 -2.3706 -0.0011 11 8 3.4472 -3.4210 -0.0011 12 6 5.5607 -2.3706 -0.0022 13 8 6.0447 -3.7396 -0.0026 14 6 7.3803 -3.9161 -0.0031 15 8 8.1203 -2.9527 -0.0037 16 6 7.9446 -5.2804 -0.0029 17 6 7.0968 -6.3905 -0.0017 18 6 7.6305 -7.6618 -0.0021 19 6 9.0032 -7.8406 -0.0042 20 6 9.8497 -6.7472 -0.0065 21 6 9.3295 -5.4674 -0.0062 22 17 10.3932 -4.0954 -0.0084 23 1 -0.4850 0.8400 0.0004 24 1 3.8649 -0.3633 -0.0014 25 1 5.9247 -1.8563 0.8872 26 1 5.9233 -1.8572 -0.8928 27 1 6.0256 -6.2534 -0.0005 28 1 6.9757 -8.5207 -0.0016 29 1 9.4151 -8.8390 -0.0049 30 1 10.9196 -6.8940 -0.0041 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731236115.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:48 Heat of formation + Delta-G solvation = -107.940769 kcal Electronic energy + Delta-G solvation = -18798.849941 eV Core-core repulsion = 15391.993287 eV Total energy + Delta-G solvation = -3406.856654 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79067 -40.39359 -39.69870 -37.62728 -37.31389 -36.09557 -33.88296 -32.72786 -31.79232 -30.16925 -26.67991 -25.18932 -23.71203 -22.11903 -21.55898 -20.53833 -19.35921 -18.25039 -17.76930 -17.69716 -17.19832 -16.73166 -16.23595 -15.89678 -15.76321 -15.28032 -14.91760 -14.68757 -14.61379 -14.23333 -13.82206 -13.76956 -13.01438 -12.91060 -12.64746 -12.55179 -12.47282 -12.32234 -12.01364 -11.88672 -11.60199 -11.10658 -10.62267 -10.35466 -10.22306 -9.86398 -8.47292 -6.10383 -0.52466 0.12358 1.01457 1.26812 1.31348 1.32519 1.39045 1.43980 1.73832 2.19079 2.58811 2.76310 3.07090 3.50417 3.67583 3.87922 3.96138 4.07274 4.11551 4.23097 4.26164 4.42111 4.81905 5.01082 5.12651 5.21719 5.33533 5.46188 5.68457 5.83740 6.43602 6.56627 6.75633 7.24003 7.75291 8.69271 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.031643 B = 0.003621 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.659594 B = 7730.986897 C = 8600.502194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.006 4.006 3 Si 0.960 3.040 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.233 1.233 7 C -0.334 4.334 8 H 0.062 0.938 9 N -0.575 5.575 10 C 0.450 3.550 11 O -0.607 6.607 12 C 0.069 3.931 13 O -0.340 6.340 14 C 0.497 3.503 15 O -0.506 6.506 16 C -0.144 4.144 17 C -0.060 4.060 18 C -0.123 4.123 19 C -0.055 4.055 20 C -0.122 4.122 21 C 0.003 3.997 22 Cl -0.049 7.049 23 H 0.283 0.717 24 H 0.393 0.607 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.138 0.862 28 H 0.167 0.833 29 H 0.182 0.818 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.558 -11.694 0.008 26.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.206 4.206 3 Si 0.780 3.220 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.156 1.156 7 C -0.462 4.462 8 H 0.080 0.920 9 N -0.217 5.217 10 C 0.237 3.763 11 O -0.491 6.491 12 C -0.008 4.008 13 O -0.255 6.255 14 C 0.343 3.657 15 O -0.395 6.395 16 C -0.146 4.146 17 C -0.078 4.078 18 C -0.141 4.141 19 C -0.073 4.073 20 C -0.140 4.140 21 C -0.025 4.025 22 Cl -0.019 7.019 23 H 0.092 0.908 24 H 0.229 0.771 25 H 0.133 0.867 26 H 0.134 0.866 27 H 0.156 0.844 28 H 0.185 0.815 29 H 0.199 0.801 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 23.237 -11.840 0.009 26.080 hybrid contribution -0.313 1.546 0.003 1.578 sum 22.924 -10.294 0.012 25.129 Atomic orbital electron populations 1.69773 1.08036 1.29584 1.49013 1.26067 0.96447 1.02567 0.95544 0.85433 0.79559 0.76866 0.80179 1.17921 1.19587 1.15615 1.19015 0.80676 0.95395 1.51159 0.91985 1.41804 1.06147 1.06967 1.66786 1.20109 0.89159 0.84090 0.82987 1.90571 1.70870 1.32532 1.55143 1.22606 0.90761 0.81146 1.06257 1.86577 1.23874 1.31175 1.83889 1.21527 0.80297 0.90747 0.73178 1.90883 1.59977 1.42731 1.45935 1.18966 0.92797 0.90522 1.12355 1.21702 1.00462 0.92018 0.93634 1.21687 0.96687 0.96820 0.98914 1.21930 0.92534 1.00382 0.92445 1.21446 1.02827 0.88763 1.01012 1.21290 0.88981 0.90871 1.01332 1.98413 1.63909 1.43415 1.96177 0.90778 0.77107 0.86669 0.86583 0.84444 0.81519 0.80051 0.81406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.71 13.96 21.66 0.30 -54.41 16 2 C -0.01 -0.33 5.50 84.93 0.47 0.13 16 3 Si 0.96 38.23 27.74 68.60 1.90 40.13 16 4 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 7 C -0.33 -19.38 10.16 84.04 0.85 -18.53 16 8 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 9 N -0.58 -27.32 5.09 -306.97 -1.56 -28.88 16 10 C 0.45 21.04 7.86 87.66 0.69 21.73 16 11 O -0.61 -34.46 16.08 15.72 0.25 -34.20 16 12 C 0.07 2.43 5.95 71.24 0.42 2.86 16 13 O -0.34 -12.34 9.01 -49.92 -0.45 -12.79 16 14 C 0.50 16.01 7.89 70.31 0.55 16.57 16 15 O -0.51 -17.12 13.76 19.91 0.27 -16.85 16 16 C -0.14 -3.77 5.88 -20.08 -0.12 -3.89 16 17 C -0.06 -1.31 9.62 22.53 0.22 -1.09 16 18 C -0.12 -1.66 10.03 22.23 0.22 -1.44 16 19 C -0.06 -0.53 10.04 22.32 0.22 -0.31 16 20 C -0.12 -1.66 9.82 22.26 0.22 -1.44 16 21 C 0.00 0.05 6.35 22.61 0.14 0.20 16 22 Cl -0.05 -1.17 26.03 -2.72 -0.07 -1.24 16 23 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 24 H 0.39 15.40 5.76 -92.71 -0.53 14.86 16 25 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 26 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 27 H 0.14 3.40 7.61 -2.91 -0.02 3.38 16 28 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 29 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 30 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -78.09 291.00 5.15 -72.94 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.60 Total: 20.52 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 3.90 Total: 14.78 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -1.26 Total: -83.29 kcal Atomic # 8 Polarization: -63.92 SS G_CDS: 0.08 Total: -63.84 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.13 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.07 Total: -1.24 kcal Total: -78.09 5.15 -72.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236115.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.000 kcal (2) G-P(sol) polarization free energy of solvation -78.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds