Wall clock time and date at job start Tue Mar 31 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32742 * 124.70069 * 2 1 4 4 C 1.44470 * 113.08718 * 180.23289 * 3 2 1 5 5 C 1.47035 * 123.47297 * 179.73169 * 4 3 2 6 6 O 1.21564 * 119.99483 * 180.02562 * 5 4 3 7 7 O 1.34797 * 119.99759 * 0.02562 * 5 4 3 8 8 C 1.45205 * 116.99374 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.46763 * 180.02562 * 8 7 5 10 10 O 1.21298 * 120.00270 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00126 * 179.97438 * 9 8 7 12 12 C 1.37091 * 120.00260 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00106 * 0.02562 * 12 11 9 14 14 C 1.38952 * 120.00218 * 180.02562 * 12 11 9 15 15 N 1.31411 * 119.99897 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00307 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46819 * 59.99975 * 16 14 12 18 18 H 1.48494 * 109.47385 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46961 * 300.00219 * 16 14 12 20 20 C 1.36103 * 113.04888 * 359.50689 * 4 3 2 21 21 C 1.50700 * 124.59968 * 180.20063 * 20 4 3 22 22 S 1.70451 * 110.80622 * 0.47667 * 20 4 3 23 23 H 1.08995 * 109.47447 * 90.00058 * 1 2 3 24 24 H 1.09004 * 109.47320 * 210.00430 * 1 2 3 25 25 H 1.09004 * 109.47128 * 329.99868 * 1 2 3 26 26 H 1.08002 * 123.45319 * 359.96028 * 3 2 1 27 27 H 1.08995 * 109.47360 * 300.00443 * 8 7 5 28 28 H 1.09004 * 109.47068 * 60.00344 * 8 7 5 29 29 H 0.96998 * 119.99519 * 0.02562 * 11 9 8 30 30 H 0.96994 * 120.00105 * 180.02562 * 15 14 12 31 31 H 1.08996 * 109.47293 * 180.34038 * 21 20 4 32 32 H 1.08999 * 109.46935 * 300.33985 * 21 20 4 33 33 H 1.09000 * 109.46981 * 60.33260 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.0913 0.0000 4 6 3.6778 0.8005 -0.0054 5 6 4.7190 1.8386 -0.0122 6 8 5.8927 1.5221 -0.0170 7 8 4.3720 3.1412 -0.0132 8 6 5.4526 4.1111 -0.0195 9 6 4.8773 5.5039 -0.0190 10 8 3.6749 5.6635 -0.0134 11 7 5.6989 6.5724 -0.0238 12 6 5.1756 7.8395 -0.0239 13 1 4.1049 7.9816 -0.0197 14 6 6.0225 8.9410 -0.0293 15 7 7.3252 8.7682 -0.0349 16 14 5.3095 10.6675 -0.0287 17 1 4.4789 10.8596 1.1873 18 1 6.4145 11.6595 -0.0358 19 1 4.4681 10.8560 -1.2378 20 6 3.9477 -0.5335 0.0014 21 6 5.3332 -1.1263 0.0023 22 16 2.5060 -1.4429 0.0010 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.8608 2.0938 -0.0006 27 1 6.0700 3.9730 0.8681 28 1 6.0625 3.9698 -0.9118 29 1 6.6604 6.4448 -0.0279 30 1 7.9164 9.5371 -0.0383 31 1 5.2630 -2.2140 0.0022 32 1 5.8699 -0.7967 -0.8873 33 1 5.8687 -0.7967 0.8926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731239601.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:51 Heat of formation + Delta-G solvation = -101.401877 kcal Electronic energy + Delta-G solvation = -19024.922368 eV Core-core repulsion = 15756.226063 eV Total energy + Delta-G solvation = -3268.696305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28794 -38.29558 -37.47403 -35.97759 -33.98149 -33.21157 -31.36700 -29.79649 -28.40606 -25.78563 -24.63522 -23.75668 -20.94578 -19.54698 -19.38462 -18.06047 -17.51299 -16.62894 -16.26359 -16.18867 -15.46892 -14.60017 -14.57206 -14.13900 -13.88268 -13.81910 -13.42725 -13.39348 -13.18580 -12.92295 -12.25151 -12.24596 -11.88888 -11.77398 -11.74214 -11.60707 -11.11602 -11.10080 -10.48031 -10.35204 -10.32588 -10.24246 -9.58059 -8.76954 -8.63380 -8.50012 -8.06688 -6.48452 -3.90469 0.55472 1.23725 1.64288 1.79101 2.90346 3.13353 3.16859 3.23623 3.28852 3.76154 4.13707 4.44210 4.63413 4.86165 4.97846 5.06129 5.16762 5.22773 5.33213 5.47192 5.50523 5.53825 5.68932 5.73253 5.83003 5.94111 5.97908 6.09369 6.21959 6.65377 7.48944 7.89501 8.00110 8.50520 9.08521 9.41092 9.91286 10.68808 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.003248 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.888959 B = 8617.460970 C = 9442.593241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.211 4.211 3 C -0.086 4.086 4 C -0.151 4.151 5 C 0.524 3.476 6 O -0.512 6.512 7 O -0.319 6.319 8 C 0.062 3.938 9 C 0.439 3.561 10 O -0.576 6.576 11 N -0.553 5.553 12 C -0.303 4.303 13 H 0.105 0.895 14 C 0.025 3.975 15 N -0.898 5.898 16 Si 0.935 3.065 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.140 4.140 21 C -0.082 4.082 22 S 0.183 5.817 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.161 0.839 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.395 0.605 30 H 0.274 0.726 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.945 -20.186 0.057 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.327 4.327 3 C -0.114 4.114 4 C -0.166 4.166 5 C 0.368 3.632 6 O -0.404 6.404 7 O -0.234 6.234 8 C -0.016 4.016 9 C 0.224 3.776 10 O -0.460 6.460 11 N -0.190 5.190 12 C -0.432 4.432 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.538 5.538 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.260 4.260 21 C -0.140 4.140 22 S 0.449 5.551 23 H 0.093 0.907 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.178 0.822 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.228 0.772 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.582 -21.513 0.060 22.810 hybrid contribution 0.953 2.453 -0.011 2.631 sum -6.629 -19.061 0.048 20.180 Atomic orbital electron populations 1.20334 0.87281 1.03332 1.02937 1.24270 1.00513 0.95655 1.12289 1.21327 0.90442 1.00285 0.99307 1.19263 0.92875 0.90766 1.13711 1.20418 0.87419 0.82396 0.72994 1.90815 1.19611 1.83136 1.46792 1.86625 1.38765 1.14811 1.83177 1.22742 0.87970 0.87364 1.03496 1.19323 0.87709 0.84697 0.85883 1.90556 1.14487 1.85748 1.55217 1.41690 1.08703 1.04717 1.63897 1.19679 0.94488 0.80761 1.48275 0.87675 1.25307 0.95100 1.00427 0.96902 1.69605 1.02182 1.32388 1.49660 0.85858 0.78191 0.80646 0.79190 1.19751 1.20878 1.19757 1.24538 1.02271 0.96387 1.02801 1.20465 0.89473 0.99203 1.04865 1.82903 0.92805 1.08521 1.70895 0.90659 0.91383 0.90114 0.82162 0.89531 0.89526 0.77153 0.91586 0.91572 0.89351 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.34 36.00 0.37 -0.25 16 2 C -0.21 -2.25 6.44 -36.19 -0.23 -2.48 16 3 C -0.09 -1.15 9.98 -39.01 -0.39 -1.54 16 4 C -0.15 -2.22 5.98 -104.65 -0.63 -2.84 16 5 C 0.52 9.15 7.92 34.30 0.27 9.42 16 6 O -0.51 -9.25 14.44 -19.32 -0.28 -9.53 16 7 O -0.32 -6.31 9.48 -47.44 -0.45 -6.76 16 8 C 0.06 1.22 5.96 36.00 0.21 1.44 16 9 C 0.44 10.78 7.86 -10.98 -0.09 10.69 16 10 O -0.58 -16.19 16.08 -14.12 -0.23 -16.42 16 11 N -0.55 -14.15 5.29 -10.96 -0.06 -14.21 16 12 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 13 H 0.11 3.04 7.16 -52.49 -0.38 2.67 16 14 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 15 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 16 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 C -0.14 -1.70 6.35 -35.08 -0.22 -1.92 16 21 C -0.08 -0.86 8.77 36.01 0.32 -0.54 16 22 S 0.18 1.72 22.93 -107.50 -2.46 -0.75 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.16 2.22 8.06 -52.49 -0.42 1.80 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 32 H 0.09 0.99 7.76 -51.93 -0.40 0.59 16 33 H 0.09 0.98 7.80 -51.93 -0.41 0.58 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -32.23 312.72 -7.29 -39.52 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -3.60 Total: 7.18 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -0.62 Total: 3.97 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.67 Total: -37.73 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.96 Total: -32.71 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.46 Total: -0.75 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.23 -7.29 -39.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239601.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.884 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds