Wall clock time and date at job start Tue Mar 31 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32742 * 124.70069 * 2 1 4 4 C 1.44470 * 113.08718 * 180.23289 * 3 2 1 5 5 C 1.47035 * 123.47297 * 179.73169 * 4 3 2 6 6 O 1.21564 * 119.99483 * 180.02562 * 5 4 3 7 7 O 1.34797 * 119.99759 * 0.02562 * 5 4 3 8 8 C 1.45205 * 116.99374 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.46763 * 180.02562 * 8 7 5 10 10 O 1.21298 * 120.00270 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00126 * 179.97438 * 9 8 7 12 12 C 1.37091 * 120.00260 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00106 * 0.02562 * 12 11 9 14 14 C 1.38952 * 120.00218 * 180.02562 * 12 11 9 15 15 N 1.31411 * 119.99897 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00307 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46819 * 59.99975 * 16 14 12 18 18 H 1.48494 * 109.47385 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46961 * 300.00219 * 16 14 12 20 20 C 1.36103 * 113.04888 * 359.50689 * 4 3 2 21 21 C 1.50700 * 124.59968 * 180.20063 * 20 4 3 22 22 S 1.70451 * 110.80622 * 0.47667 * 20 4 3 23 23 H 1.08995 * 109.47447 * 90.00058 * 1 2 3 24 24 H 1.09004 * 109.47320 * 210.00430 * 1 2 3 25 25 H 1.09004 * 109.47128 * 329.99868 * 1 2 3 26 26 H 1.08002 * 123.45319 * 359.96028 * 3 2 1 27 27 H 1.08995 * 109.47360 * 300.00443 * 8 7 5 28 28 H 1.09004 * 109.47068 * 60.00344 * 8 7 5 29 29 H 0.96998 * 119.99519 * 0.02562 * 11 9 8 30 30 H 0.96994 * 120.00105 * 180.02562 * 15 14 12 31 31 H 1.08996 * 109.47293 * 180.34038 * 21 20 4 32 32 H 1.08999 * 109.46935 * 300.33985 * 21 20 4 33 33 H 1.09000 * 109.46981 * 60.33260 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.0913 0.0000 4 6 3.6778 0.8005 -0.0054 5 6 4.7190 1.8386 -0.0122 6 8 5.8927 1.5221 -0.0170 7 8 4.3720 3.1412 -0.0132 8 6 5.4526 4.1111 -0.0195 9 6 4.8773 5.5039 -0.0190 10 8 3.6749 5.6635 -0.0134 11 7 5.6989 6.5724 -0.0238 12 6 5.1756 7.8395 -0.0239 13 1 4.1049 7.9816 -0.0197 14 6 6.0225 8.9410 -0.0293 15 7 7.3252 8.7682 -0.0349 16 14 5.3095 10.6675 -0.0287 17 1 4.4789 10.8596 1.1873 18 1 6.4145 11.6595 -0.0358 19 1 4.4681 10.8560 -1.2378 20 6 3.9477 -0.5335 0.0014 21 6 5.3332 -1.1263 0.0023 22 16 2.5060 -1.4429 0.0010 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.8608 2.0938 -0.0006 27 1 6.0700 3.9730 0.8681 28 1 6.0625 3.9698 -0.9118 29 1 6.6604 6.4448 -0.0279 30 1 7.9164 9.5371 -0.0383 31 1 5.2630 -2.2140 0.0022 32 1 5.8699 -0.7967 -0.8873 33 1 5.8687 -0.7967 0.8926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731239601.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:51 Heat of formation + Delta-G solvation = -121.024939 kcal Electronic energy + Delta-G solvation = -19025.773288 eV Core-core repulsion = 15756.226063 eV Total energy + Delta-G solvation = -3269.547225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66675 -40.12432 -38.64553 -37.40291 -36.05280 -34.06302 -33.44013 -30.82616 -29.87078 -27.10764 -26.20745 -24.88868 -22.06681 -21.46652 -20.50831 -20.09320 -18.67639 -18.03978 -17.73934 -17.43737 -17.11224 -16.48061 -15.90562 -15.83179 -15.10092 -15.07688 -14.59346 -14.26478 -14.22557 -13.93240 -13.84149 -13.67853 -13.56440 -12.94299 -12.90086 -12.65269 -12.58730 -12.50418 -12.13306 -11.96852 -11.88223 -11.58871 -11.54178 -10.54094 -10.13950 -9.64649 -9.49503 -8.53717 -6.04786 -0.43584 0.37930 0.71405 0.73138 1.36543 1.39916 1.48746 1.59048 1.84039 1.94649 2.29675 3.05334 3.11539 3.56404 3.66634 3.92755 4.10669 4.12537 4.16269 4.19357 4.48877 4.62114 4.65054 4.77443 4.82085 5.02336 5.08041 5.17364 5.26448 5.33908 5.35507 5.86857 6.43641 6.61333 7.00714 7.37249 7.90891 8.63187 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.032899 B = 0.003248 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.888959 B = 8617.460970 C = 9442.593241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.208 4.208 3 C -0.116 4.116 4 C -0.187 4.187 5 C 0.522 3.478 6 O -0.525 6.525 7 O -0.340 6.340 8 C 0.073 3.927 9 C 0.436 3.564 10 O -0.618 6.618 11 N -0.556 5.556 12 C -0.341 4.341 13 H 0.085 0.915 14 C -0.008 4.008 15 N -0.915 5.915 16 Si 0.999 3.001 17 H -0.269 1.269 18 H -0.268 1.268 19 H -0.269 1.269 20 C -0.147 4.147 21 C -0.083 4.083 22 S 0.272 5.728 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.142 0.858 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.400 0.600 30 H 0.282 0.718 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.458 -21.889 0.052 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.325 4.325 3 C -0.143 4.143 4 C -0.203 4.203 5 C 0.367 3.633 6 O -0.417 6.417 7 O -0.255 6.255 8 C -0.005 4.005 9 C 0.223 3.777 10 O -0.505 6.505 11 N -0.193 5.193 12 C -0.470 4.470 13 H 0.103 0.897 14 C -0.209 4.209 15 N -0.555 5.555 16 Si 0.822 3.178 17 H -0.194 1.194 18 H -0.193 1.193 19 H -0.194 1.194 20 C -0.268 4.268 21 C -0.141 4.141 22 S 0.539 5.461 23 H 0.106 0.894 24 H 0.109 0.891 25 H 0.098 0.902 26 H 0.159 0.841 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.235 0.765 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.068 -23.239 0.054 24.599 hybrid contribution 1.079 2.822 -0.010 3.021 sum -6.989 -20.417 0.044 21.580 Atomic orbital electron populations 1.20487 0.85151 1.04452 1.04083 1.24717 1.02156 0.95886 1.09748 1.21198 0.90403 1.00520 1.02166 1.19273 0.92727 0.91004 1.17265 1.20931 0.88183 0.81798 0.72395 1.90786 1.20177 1.82983 1.47802 1.86626 1.39018 1.16037 1.83851 1.22522 0.87846 0.84787 1.05307 1.20064 0.87137 0.86276 0.84231 1.90518 1.16366 1.86766 1.56803 1.41719 1.09014 1.04652 1.63950 1.19707 0.94019 0.82348 1.50902 0.89746 1.26148 0.95386 1.03830 0.95525 1.69666 1.03007 1.33849 1.48982 0.84901 0.77873 0.75871 0.79180 1.19431 1.19280 1.19443 1.24949 1.04592 0.96063 1.01154 1.20527 0.88444 1.01168 1.03948 1.82588 0.89677 1.05749 1.68071 0.89391 0.89095 0.90224 0.84065 0.87601 0.87593 0.76545 0.90892 0.88249 0.90276 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.34 71.24 0.74 -0.36 16 2 C -0.21 -4.10 6.44 24.51 0.16 -3.94 16 3 C -0.12 -3.14 9.98 22.68 0.23 -2.91 16 4 C -0.19 -5.55 5.98 -19.88 -0.12 -5.67 16 5 C 0.52 18.70 7.92 70.13 0.56 19.25 16 6 O -0.53 -19.20 14.44 19.63 0.28 -18.91 16 7 O -0.34 -13.94 9.48 -50.70 -0.48 -14.42 16 8 C 0.07 2.93 5.96 71.23 0.42 3.35 16 9 C 0.44 22.15 7.86 87.65 0.69 22.84 16 10 O -0.62 -36.27 16.08 15.71 0.25 -36.01 16 11 N -0.56 -29.26 5.29 -306.98 -1.62 -30.88 16 12 C -0.34 -19.47 9.68 84.04 0.81 -18.65 16 13 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 14 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 15 N -0.92 -49.16 13.05 21.66 0.28 -48.87 16 16 Si 1.00 42.41 29.55 68.60 2.03 44.44 16 17 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 18 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 20 C -0.15 -3.36 6.35 25.19 0.16 -3.20 16 21 C -0.08 -1.60 8.77 71.24 0.62 -0.98 16 22 S 0.27 4.27 22.93 -56.49 -1.30 2.97 16 23 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 27 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 28 H 0.11 3.83 8.14 -2.38 -0.02 3.81 16 29 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 30 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.10 1.21 8.11 -2.39 -0.02 1.19 16 32 H 0.08 1.70 7.76 -2.39 -0.02 1.69 16 33 H 0.08 1.70 7.80 -2.39 -0.02 1.68 16 Total: -1.00 -70.94 312.72 4.60 -66.34 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: 0.42 Total: 25.58 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 4.74 Total: 9.78 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -1.34 Total: -79.76 kcal Atomic # 8 Polarization: -69.41 SS G_CDS: 0.06 Total: -69.35 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.30 Total: 2.97 kcal Total: -70.94 4.60 -66.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239601.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.685 kcal (2) G-P(sol) polarization free energy of solvation -70.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds