Wall clock time and date at job start Tue Mar 31 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37416 * 122.44452 * 2 1 4 4 C 1.36749 * 113.28803 * 180.24301 * 3 2 1 5 5 C 1.46390 * 125.46366 * 179.72319 * 4 3 2 6 6 O 1.21628 * 120.00149 * 0.02562 * 5 4 3 7 7 O 1.34895 * 120.00276 * 180.02562 * 5 4 3 8 8 C 1.45200 * 117.00217 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47126 * 179.97438 * 8 7 5 10 10 O 1.21290 * 120.00370 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00340 * 179.97438 * 9 8 7 12 12 C 1.37090 * 120.00594 * 179.97438 * 11 9 8 13 13 H 1.08004 * 119.99813 * 0.02562 * 12 11 9 14 14 C 1.38952 * 120.00567 * 179.97438 * 12 11 9 15 15 N 1.31413 * 119.99477 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00266 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47025 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46891 * 120.00463 * 16 14 12 19 19 H 1.48498 * 109.47350 * 240.00046 * 16 14 12 20 20 S 1.75835 * 109.07524 * 359.60456 * 4 3 2 21 21 C 1.33859 * 122.44509 * 179.97438 * 2 1 3 22 22 C 1.50698 * 124.52121 * 359.97438 * 21 2 1 23 23 H 1.09002 * 109.46387 * 90.03387 * 1 2 3 24 24 H 1.09002 * 109.46724 * 210.02951 * 1 2 3 25 25 H 1.08992 * 109.47108 * 330.03107 * 1 2 3 26 26 H 1.08002 * 123.35248 * 359.96838 * 3 2 1 27 27 H 1.09005 * 109.46833 * 299.99690 * 8 7 5 28 28 H 1.09002 * 109.47372 * 59.99963 * 8 7 5 29 29 H 0.96999 * 119.99228 * 359.97438 * 11 9 8 30 30 H 0.97000 * 119.99623 * 179.97438 * 15 14 12 31 31 H 1.09001 * 109.47173 * 89.99232 * 22 21 2 32 32 H 1.09000 * 109.47371 * 209.99379 * 22 21 2 33 33 H 1.09006 * 109.47133 * 329.99699 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2443 1.1597 0.0000 4 6 3.5943 0.9421 -0.0053 5 6 4.6225 1.9840 -0.0124 6 8 4.3000 3.1568 -0.0134 7 8 5.9278 1.6436 -0.0177 8 6 6.8922 2.7291 -0.0240 9 6 8.2879 2.1610 -0.0288 10 8 8.4537 0.9595 -0.0265 11 7 9.3522 2.9880 -0.0355 12 6 10.6220 2.4712 -0.0392 13 1 10.7695 1.4013 -0.0373 14 6 11.7192 3.3238 -0.0467 15 7 11.5396 4.6256 -0.0496 16 14 13.4493 2.6195 -0.0511 17 1 13.3799 1.1362 -0.0461 18 1 14.1668 3.0771 -1.2681 19 1 14.1765 3.0856 1.1568 20 16 3.8972 -0.7900 0.0011 21 6 2.2252 -1.1296 0.0005 22 6 1.6355 -2.5165 0.0017 23 1 -0.3632 -0.0006 -1.0277 24 1 -0.3633 -0.8898 0.5143 25 1 -0.3633 0.8902 0.5133 26 1 1.8015 2.1448 -0.0005 27 1 6.7453 3.3404 -0.9145 28 1 6.7535 3.3436 0.8655 29 1 9.2196 3.9488 -0.0376 30 1 12.3055 5.2207 -0.0544 31 1 1.4929 -2.8515 -1.0257 32 1 2.3126 -3.1988 0.5156 33 1 0.6745 -2.5023 0.5159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731241647.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:45 Heat of formation + Delta-G solvation = -98.412906 kcal Electronic energy + Delta-G solvation = -18778.053159 eV Core-core repulsion = 15509.486466 eV Total energy + Delta-G solvation = -3268.566694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.22312 -38.74347 -38.02475 -36.01715 -33.99617 -32.57387 -31.37642 -29.95991 -28.61153 -26.36167 -24.66242 -23.68981 -21.01465 -19.59100 -18.73203 -18.35722 -18.02731 -16.45035 -16.37638 -16.32231 -15.51196 -14.80147 -14.67313 -14.25655 -14.00074 -13.92591 -13.58283 -13.17144 -12.94841 -12.75869 -12.44307 -12.16809 -12.04074 -11.88073 -11.83982 -11.61971 -11.14919 -10.87110 -10.54135 -10.42850 -10.38592 -10.29589 -9.61316 -8.83624 -8.54144 -8.52163 -8.07929 -6.49631 -3.91534 0.28283 1.34882 1.82367 2.07694 2.66641 2.93078 3.12189 3.24266 3.31895 3.74097 4.12016 4.50570 4.64955 4.84116 4.90879 5.09142 5.11949 5.15516 5.19489 5.32482 5.39704 5.49867 5.56053 5.66745 5.69875 5.75269 6.04443 6.10342 6.23119 6.55197 7.48504 7.79616 7.95772 8.48888 9.07566 9.39705 9.89536 10.67740 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.041263 B = 0.003107 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.413692 B = 9008.702012 C = 9661.355719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.132 4.132 3 C -0.042 4.042 4 C -0.259 4.259 5 C 0.536 3.464 6 O -0.505 6.505 7 O -0.323 6.323 8 C 0.062 3.938 9 C 0.439 3.561 10 O -0.575 6.575 11 N -0.553 5.553 12 C -0.301 4.301 13 H 0.107 0.893 14 C 0.024 3.976 15 N -0.897 5.897 16 Si 0.933 3.067 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 S 0.270 5.730 21 C -0.210 4.210 22 C -0.085 4.085 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.153 0.847 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.395 0.605 30 H 0.273 0.727 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.352 -8.558 0.077 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.144 4.144 3 C -0.076 4.076 4 C -0.377 4.377 5 C 0.379 3.621 6 O -0.396 6.396 7 O -0.238 6.238 8 C -0.015 4.015 9 C 0.224 3.776 10 O -0.459 6.459 11 N -0.190 5.190 12 C -0.430 4.430 13 H 0.125 0.875 14 C -0.178 4.178 15 N -0.538 5.538 16 Si 0.760 3.240 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 S 0.541 5.459 21 C -0.330 4.330 22 C -0.144 4.144 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.171 0.829 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.229 0.771 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.786 -9.790 0.083 21.184 hybrid contribution -0.453 1.588 -0.018 1.651 sum -19.239 -8.202 0.065 20.914 Atomic orbital electron populations 1.20494 0.89446 1.02759 1.02291 1.18577 0.97822 0.91048 1.07003 1.20577 0.90326 1.00086 0.96591 1.23475 0.95792 0.97367 1.21110 1.19681 0.82147 0.87071 0.73168 1.90868 1.82901 1.19134 1.46667 1.86626 1.14721 1.39054 1.83384 1.22789 0.87353 0.87657 1.03712 1.19289 0.84656 0.87701 0.85986 1.90562 1.85604 1.14530 1.55183 1.41702 1.04761 1.08688 1.63848 1.19778 0.80650 0.94579 1.48037 0.87544 1.25318 1.00480 0.95089 0.96920 1.69625 1.32319 1.02069 1.49759 0.85738 0.81114 0.79339 0.77800 1.19074 1.20623 1.20617 1.83698 1.00177 0.96742 1.65290 1.24382 1.00083 1.00433 1.08134 1.20406 1.01101 0.89760 1.03084 0.91252 0.91431 0.91425 0.82895 0.89333 0.89336 0.77139 0.91677 0.90317 0.90977 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 9.84 36.01 0.35 -0.28 16 2 C -0.13 -1.34 5.78 -106.46 -0.62 -1.95 16 3 C -0.04 -0.51 9.79 -40.42 -0.40 -0.91 16 4 C -0.26 -3.79 6.45 -36.84 -0.24 -4.03 16 5 C 0.54 9.47 7.92 34.01 0.27 9.74 16 6 O -0.50 -9.53 16.64 -19.36 -0.32 -9.85 16 7 O -0.32 -6.40 9.61 -47.72 -0.46 -6.86 16 8 C 0.06 1.23 5.96 36.00 0.21 1.44 16 9 C 0.44 10.74 7.86 -10.99 -0.09 10.66 16 10 O -0.57 -16.12 16.08 -14.11 -0.23 -16.35 16 11 N -0.55 -14.11 5.29 -10.96 -0.06 -14.17 16 12 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 13 H 0.11 3.08 7.16 -52.48 -0.38 2.71 16 14 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 15 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 16 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 20 S 0.27 3.39 22.87 -107.50 -2.46 0.93 16 21 C -0.21 -2.10 6.28 -35.85 -0.23 -2.32 16 22 C -0.09 -0.57 9.98 36.00 0.36 -0.21 16 23 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.38 6.54 -51.93 -0.34 0.04 16 25 H 0.07 0.43 8.13 -51.93 -0.42 0.00 16 26 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 30 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.42 6.57 -51.93 -0.34 0.08 16 LS Contribution 312.82 15.07 4.71 4.71 Total: -1.00 -32.62 312.82 -7.18 -39.80 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -3.47 Total: 5.31 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -0.60 Total: 4.18 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.67 Total: -37.64 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -1.01 Total: -33.06 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.46 Total: 0.93 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.62 -7.18 -39.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241647.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.612 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds