Wall clock time and date at job start Tue Mar 31 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37416 * 122.44452 * 2 1 4 4 C 1.36749 * 113.28803 * 180.24301 * 3 2 1 5 5 C 1.46390 * 125.46366 * 179.72319 * 4 3 2 6 6 O 1.21628 * 120.00149 * 0.02562 * 5 4 3 7 7 O 1.34895 * 120.00276 * 180.02562 * 5 4 3 8 8 C 1.45200 * 117.00217 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47126 * 179.97438 * 8 7 5 10 10 O 1.21290 * 120.00370 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00340 * 179.97438 * 9 8 7 12 12 C 1.37090 * 120.00594 * 179.97438 * 11 9 8 13 13 H 1.08004 * 119.99813 * 0.02562 * 12 11 9 14 14 C 1.38952 * 120.00567 * 179.97438 * 12 11 9 15 15 N 1.31413 * 119.99477 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00266 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47025 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46891 * 120.00463 * 16 14 12 19 19 H 1.48498 * 109.47350 * 240.00046 * 16 14 12 20 20 S 1.75835 * 109.07524 * 359.60456 * 4 3 2 21 21 C 1.33859 * 122.44509 * 179.97438 * 2 1 3 22 22 C 1.50698 * 124.52121 * 359.97438 * 21 2 1 23 23 H 1.09002 * 109.46387 * 90.03387 * 1 2 3 24 24 H 1.09002 * 109.46724 * 210.02951 * 1 2 3 25 25 H 1.08992 * 109.47108 * 330.03107 * 1 2 3 26 26 H 1.08002 * 123.35248 * 359.96838 * 3 2 1 27 27 H 1.09005 * 109.46833 * 299.99690 * 8 7 5 28 28 H 1.09002 * 109.47372 * 59.99963 * 8 7 5 29 29 H 0.96999 * 119.99228 * 359.97438 * 11 9 8 30 30 H 0.97000 * 119.99623 * 179.97438 * 15 14 12 31 31 H 1.09001 * 109.47173 * 89.99232 * 22 21 2 32 32 H 1.09000 * 109.47371 * 209.99379 * 22 21 2 33 33 H 1.09006 * 109.47133 * 329.99699 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2443 1.1597 0.0000 4 6 3.5943 0.9421 -0.0053 5 6 4.6225 1.9840 -0.0124 6 8 4.3000 3.1568 -0.0134 7 8 5.9278 1.6436 -0.0177 8 6 6.8922 2.7291 -0.0240 9 6 8.2879 2.1610 -0.0288 10 8 8.4537 0.9595 -0.0265 11 7 9.3522 2.9880 -0.0355 12 6 10.6220 2.4712 -0.0392 13 1 10.7695 1.4013 -0.0373 14 6 11.7192 3.3238 -0.0467 15 7 11.5396 4.6256 -0.0496 16 14 13.4493 2.6195 -0.0511 17 1 13.3799 1.1362 -0.0461 18 1 14.1668 3.0771 -1.2681 19 1 14.1765 3.0856 1.1568 20 16 3.8972 -0.7900 0.0011 21 6 2.2252 -1.1296 0.0005 22 6 1.6355 -2.5165 0.0017 23 1 -0.3632 -0.0006 -1.0277 24 1 -0.3633 -0.8898 0.5143 25 1 -0.3633 0.8902 0.5133 26 1 1.8015 2.1448 -0.0005 27 1 6.7453 3.3404 -0.9145 28 1 6.7535 3.3436 0.8655 29 1 9.2196 3.9488 -0.0376 30 1 12.3055 5.2207 -0.0544 31 1 1.4929 -2.8515 -1.0257 32 1 2.3126 -3.1988 0.5156 33 1 0.6745 -2.5023 0.5159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731241647.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:44 Heat of formation + Delta-G solvation = -118.427933 kcal Electronic energy + Delta-G solvation = -18778.921076 eV Core-core repulsion = 15509.486466 eV Total energy + Delta-G solvation = -3269.434610 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.64428 -40.14145 -39.47120 -37.50743 -36.06091 -33.49983 -33.37675 -30.72681 -30.10519 -27.47114 -26.39471 -24.73578 -22.19697 -21.48972 -20.11974 -19.77026 -19.43198 -17.95010 -17.81198 -17.68022 -17.01195 -16.53320 -15.89178 -15.85931 -15.33484 -15.20901 -14.68857 -14.23458 -14.06863 -13.73764 -13.66172 -13.58325 -13.40908 -12.96270 -12.85300 -12.70905 -12.53650 -12.48312 -12.11600 -11.96912 -11.93409 -11.70238 -11.60847 -10.55693 -10.14257 -9.76260 -9.44552 -8.54365 -6.05164 -0.72228 0.38995 0.91495 1.07622 1.24854 1.33258 1.43300 1.58096 1.77419 1.84107 2.28418 2.99552 3.10963 3.62025 3.80288 3.99897 4.07944 4.09594 4.17384 4.20901 4.56335 4.63630 4.70371 4.79836 4.91306 5.04842 5.09949 5.13446 5.35435 5.37804 5.52140 5.86386 6.38848 6.49785 7.00461 7.36510 7.89882 8.63009 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.041263 B = 0.003107 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.413692 B = 9008.702012 C = 9661.355719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.141 4.141 3 C -0.024 4.024 4 C -0.301 4.301 5 C 0.536 3.464 6 O -0.526 6.526 7 O -0.342 6.342 8 C 0.072 3.928 9 C 0.437 3.563 10 O -0.616 6.616 11 N -0.556 5.556 12 C -0.338 4.338 13 H 0.085 0.915 14 C -0.009 4.009 15 N -0.915 5.915 16 Si 0.999 3.001 17 H -0.271 1.271 18 H -0.269 1.269 19 H -0.269 1.269 20 S 0.234 5.766 21 C -0.183 4.183 22 C -0.089 4.089 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.161 0.839 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.400 0.600 30 H 0.281 0.719 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.950 -9.209 0.083 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.153 4.153 3 C -0.059 4.059 4 C -0.419 4.419 5 C 0.383 3.617 6 O -0.418 6.418 7 O -0.257 6.257 8 C -0.005 4.005 9 C 0.224 3.776 10 O -0.503 6.503 11 N -0.194 5.194 12 C -0.467 4.467 13 H 0.103 0.897 14 C -0.210 4.210 15 N -0.555 5.555 16 Si 0.822 3.178 17 H -0.195 1.195 18 H -0.194 1.194 19 H -0.194 1.194 20 S 0.505 5.495 21 C -0.303 4.303 22 C -0.147 4.147 23 H 0.099 0.901 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.179 0.821 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.235 0.765 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.402 -10.409 0.089 22.905 hybrid contribution -0.096 1.740 -0.021 1.743 sum -20.499 -8.669 0.068 22.257 Atomic orbital electron populations 1.20595 0.86625 1.04124 1.03437 1.18922 0.99637 0.90075 1.06640 1.20900 0.89520 1.01400 0.94112 1.23370 0.95821 0.97449 1.25295 1.20106 0.81580 0.87721 0.72336 1.90836 1.82853 1.19987 1.48104 1.86622 1.15869 1.39264 1.83977 1.22587 0.84768 0.87552 1.05603 1.20008 0.86213 0.87111 0.84313 1.90525 1.86627 1.16387 1.56750 1.41729 1.04689 1.09012 1.63923 1.19767 0.82227 0.94025 1.50648 0.89738 1.26154 1.03886 0.95353 0.95578 1.69682 1.33839 1.02885 1.49116 0.84780 0.76214 0.78300 0.78488 1.19524 1.19381 1.19372 1.83794 1.03168 0.96073 1.66439 1.24828 0.98112 1.02225 1.05177 1.20627 1.02051 0.87533 1.04511 0.90110 0.89526 0.90720 0.82116 0.87343 0.87350 0.76524 0.90909 0.88716 0.90322 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.84 71.24 0.70 -0.21 16 2 C -0.14 -2.53 5.78 -21.05 -0.12 -2.65 16 3 C -0.02 -0.57 9.79 21.73 0.21 -0.36 16 4 C -0.30 -8.89 6.45 24.04 0.16 -8.73 16 5 C 0.54 19.36 7.92 69.94 0.55 19.92 16 6 O -0.53 -20.02 16.64 19.42 0.32 -19.69 16 7 O -0.34 -13.93 9.61 -51.70 -0.50 -14.43 16 8 C 0.07 2.88 5.96 71.23 0.42 3.31 16 9 C 0.44 22.04 7.86 87.65 0.69 22.73 16 10 O -0.62 -35.94 16.08 15.74 0.25 -35.69 16 11 N -0.56 -29.12 5.29 -306.99 -1.62 -30.74 16 12 C -0.34 -19.20 9.68 84.04 0.81 -18.39 16 13 H 0.08 5.10 7.16 -2.91 -0.02 5.08 16 14 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 15 N -0.92 -49.03 13.05 21.66 0.28 -48.75 16 16 Si 1.00 42.35 29.55 68.60 2.03 44.38 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 S 0.23 5.90 22.87 -56.49 -1.29 4.60 16 21 C -0.18 -3.26 6.28 24.69 0.15 -3.11 16 22 C -0.09 -0.89 9.98 71.24 0.71 -0.18 16 23 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.09 0.58 6.54 -2.39 -0.02 0.56 16 25 H 0.07 0.69 8.13 -2.39 -0.02 0.67 16 26 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 27 H 0.11 3.89 8.14 -2.38 -0.02 3.87 16 28 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 29 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16 30 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.62 6.57 -2.38 -0.02 0.60 16 Total: -1.00 -71.52 312.82 4.66 -66.86 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.43 Total: 21.15 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 4.76 Total: 12.32 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -1.34 Total: -79.49 kcal Atomic # 8 Polarization: -69.89 SS G_CDS: 0.08 Total: -69.81 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -1.29 Total: 4.60 kcal Total: -71.52 4.66 -66.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241647.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.573 kcal (2) G-P(sol) polarization free energy of solvation -71.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds