Wall clock time and date at job start Tue Mar 31 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.37406 * 123.35879 * 264.70819 * 3 2 1 5 5 C 1.33859 * 115.11122 * 179.76829 * 4 3 2 6 6 S 1.70616 * 110.96222 * 0.48467 * 5 4 3 7 7 C 1.36758 * 123.35161 * 85.00338 * 3 2 1 8 8 C 1.46389 * 125.46430 * 0.03342 * 7 3 2 9 9 O 1.21635 * 120.00275 * 0.02562 * 8 7 3 10 10 O 1.34898 * 120.00294 * 179.97438 * 8 7 3 11 11 C 1.45200 * 117.00270 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47128 * 180.02562 * 11 10 8 13 13 O 1.21292 * 119.99861 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99844 * 180.02562 * 12 11 10 15 15 C 1.37106 * 119.99825 * 179.97438 * 14 12 11 16 16 H 1.07996 * 119.99718 * 0.02562 * 15 14 12 17 17 C 1.38946 * 119.99720 * 179.97438 * 15 14 12 18 18 N 1.31408 * 120.00233 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99615 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47393 * 59.99730 * 19 17 15 21 21 H 1.48505 * 109.47008 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46709 * 299.99745 * 19 17 15 23 23 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 24 24 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 27 27 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 28 28 H 1.07999 * 122.44208 * 359.97438 * 4 3 2 29 29 H 1.08001 * 124.52201 * 180.22305 * 5 4 3 30 30 H 1.08994 * 109.47048 * 300.00165 * 11 10 8 31 31 H 1.09001 * 109.46691 * 60.00240 * 11 10 8 32 32 H 0.96994 * 120.00161 * 359.97438 * 14 12 11 33 33 H 0.97003 * 119.99991 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3841 2.0979 -1.1428 5 6 2.8044 3.3544 -0.9520 6 16 2.7928 3.7568 0.7059 7 6 2.1892 2.1628 1.1380 8 6 1.9015 1.7035 2.4979 9 8 1.4865 0.5753 2.6837 10 8 2.0974 2.5310 3.5450 11 6 1.7915 2.0082 4.8647 12 6 2.0693 3.0665 5.9010 13 8 2.4838 4.1545 5.5608 14 7 1.8571 2.8040 7.2058 15 6 2.1103 3.7666 8.1487 16 1 2.4794 4.7353 7.8457 17 6 1.8911 3.4961 9.4938 18 7 1.4406 2.3179 9.8622 19 14 2.2354 4.8080 10.7784 20 1 1.3895 5.9985 10.5093 21 1 1.9231 4.2731 12.1281 22 1 3.6679 5.1949 10.7190 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.3225 1.6501 -2.1236 29 1 3.1138 4.0228 -1.7419 30 1 0.7401 1.7245 4.9083 31 1 2.4122 1.1342 5.0620 32 1 1.5253 1.9341 7.4778 33 1 1.2879 2.1290 10.8013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731246551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:48 Heat of formation + Delta-G solvation = -95.730694 kcal Electronic energy + Delta-G solvation = -19162.815889 eV Core-core repulsion = 15894.365505 eV Total energy + Delta-G solvation = -3268.450384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31403 -38.64103 -37.89751 -35.94606 -33.99401 -32.87064 -31.38540 -30.09592 -28.16194 -25.65850 -24.51879 -22.55318 -22.02749 -19.59463 -18.82975 -18.45313 -18.00688 -16.55191 -16.31906 -16.09798 -15.52279 -14.89557 -14.40773 -14.33629 -14.11543 -13.90482 -13.72327 -13.14118 -12.93371 -12.54600 -12.28034 -12.05071 -11.99694 -11.62012 -11.57900 -11.19109 -11.10376 -10.76665 -10.48511 -10.40911 -10.31348 -10.23990 -9.58993 -9.02441 -8.57929 -8.51733 -8.07726 -6.49292 -3.91409 0.30073 1.39047 1.84074 2.14196 2.69154 2.92149 3.16063 3.23259 3.28118 3.74566 4.12316 4.61454 4.67204 4.91572 4.99128 5.14538 5.15700 5.22640 5.32804 5.50867 5.53740 5.66254 5.70282 5.83139 5.90588 6.04104 6.10490 6.21637 6.28939 6.62501 7.48215 7.82207 7.96048 8.49177 9.07549 9.39824 9.89828 10.67879 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.032775 B = 0.003463 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.112139 B = 8083.291049 C = 8836.330085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 C -0.014 4.014 4 C -0.153 4.153 5 C -0.239 4.239 6 S 0.267 5.733 7 C -0.263 4.263 8 C 0.535 3.465 9 O -0.499 6.499 10 O -0.324 6.324 11 C 0.063 3.937 12 C 0.438 3.562 13 O -0.575 6.575 14 N -0.552 5.552 15 C -0.303 4.303 16 H 0.106 0.894 17 C 0.026 3.974 18 N -0.897 5.897 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.144 0.856 29 H 0.170 0.830 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.395 0.605 33 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 -3.287 -19.957 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 C -0.029 4.029 4 C -0.184 4.184 5 C -0.377 4.377 6 S 0.538 5.462 7 C -0.382 4.382 8 C 0.379 3.621 9 O -0.390 6.390 10 O -0.239 6.239 11 C -0.014 4.014 12 C 0.223 3.777 13 O -0.459 6.459 14 N -0.189 5.189 15 C -0.432 4.432 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.538 5.538 19 Si 0.761 3.239 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.197 1.197 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.089 0.911 28 H 0.162 0.838 29 H 0.187 0.813 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.229 0.771 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.756 -1.578 -19.057 19.137 hybrid contribution -0.451 -1.307 -0.015 1.382 sum 0.305 -2.885 -19.072 19.291 Atomic orbital electron populations 1.21618 0.94163 1.01896 1.01897 1.20459 0.96641 0.90533 1.03737 1.19514 0.95867 0.97392 0.90155 1.19808 1.04889 0.94319 0.99427 1.25566 1.07337 1.01395 1.03447 1.83747 1.57019 1.09665 0.95802 1.23433 1.19089 1.01322 0.94327 1.19654 0.74818 0.83215 0.84444 1.90834 1.42758 1.19640 1.85794 1.86630 1.78389 1.43515 1.15352 1.22766 1.02233 0.97369 0.79041 1.19301 0.86307 0.88805 0.83291 1.90562 1.50344 1.24680 1.80338 1.41686 1.57471 1.16048 1.03727 1.19681 1.41828 0.95990 0.85719 0.87654 1.25306 0.96750 0.97492 0.98152 1.69606 1.44633 1.21228 1.18320 0.85860 0.79173 0.80087 0.78776 1.19743 1.20871 1.19747 0.92220 0.93082 0.92182 0.88762 0.91053 0.83825 0.81278 0.89402 0.89389 0.77143 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.78 37.16 0.36 -1.08 16 2 C -0.07 -0.81 5.50 -27.88 -0.15 -0.97 16 3 C -0.01 -0.16 5.16 -105.46 -0.54 -0.71 16 4 C -0.15 -1.48 9.96 -41.42 -0.41 -1.89 16 5 C -0.24 -2.20 10.92 29.19 0.32 -1.89 16 6 S 0.27 3.24 22.92 -107.50 -2.46 0.78 16 7 C -0.26 -3.78 6.45 -36.84 -0.24 -4.01 16 8 C 0.53 9.15 7.92 34.01 0.27 9.42 16 9 O -0.50 -8.79 13.52 -19.37 -0.26 -9.05 16 10 O -0.32 -6.31 9.61 -47.72 -0.46 -6.77 16 11 C 0.06 1.23 5.96 36.01 0.21 1.45 16 12 C 0.44 10.66 7.86 -10.99 -0.09 10.57 16 13 O -0.58 -16.07 16.08 -14.11 -0.23 -16.29 16 14 N -0.55 -14.02 5.29 -10.96 -0.06 -14.08 16 15 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 16 H 0.11 3.03 7.16 -52.49 -0.38 2.66 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 18 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 19 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H 0.06 0.75 7.60 -51.93 -0.39 0.36 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 1.21 6.33 -51.93 -0.33 0.88 16 27 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16 28 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 29 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 32 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 33 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 310.13 15.07 4.67 4.67 Total: -1.00 -31.75 310.13 -7.12 -38.87 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -3.51 Total: 6.61 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.51 Total: 2.94 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.67 Total: -37.46 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.95 Total: -32.12 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.46 Total: 0.78 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.75 -7.12 -38.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731246551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.864 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds