Wall clock time and date at job start Tue Mar 31 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99715 * 2 1 4 4 H 1.48500 * 109.46863 * 269.99680 * 3 2 1 5 5 H 1.48500 * 109.47326 * 29.99981 * 3 2 1 6 6 H 1.48499 * 109.46824 * 149.99920 * 3 2 1 7 7 C 1.37872 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47304 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.47210 * 180.02562 * 10 9 7 12 12 C 1.34714 * 116.99952 * 180.02562 * 11 10 9 13 13 O 1.21467 * 120.00100 * 0.02562 * 12 11 10 14 14 C 1.47731 * 120.00143 * 180.02562 * 12 11 10 15 15 C 1.39625 * 120.13300 * 0.02562 * 14 12 11 16 16 C 1.38162 * 119.81761 * 179.97438 * 15 14 12 17 17 F 1.35101 * 119.95269 * 179.97438 * 16 15 14 18 18 C 1.38606 * 120.09521 * 359.97438 * 16 15 14 19 19 C 1.38302 * 120.28106 * 359.97438 * 18 16 15 20 20 N 1.48015 * 119.91091 * 180.02562 * 19 18 16 21 21 O 1.21803 * 120.00033 * 179.97438 * 20 19 18 22 22 O 1.21800 * 120.00026 * 359.97438 * 20 19 18 23 23 C 1.37980 * 120.17663 * 0.02562 * 19 18 16 24 24 H 0.97006 * 120.00127 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46515 * 60.00250 * 9 7 2 26 26 H 1.09000 * 109.47434 * 300.00463 * 9 7 2 27 27 H 1.09007 * 109.46641 * 60.00365 * 10 9 7 28 28 H 1.08992 * 109.47448 * 300.00875 * 10 9 7 29 29 H 1.07999 * 120.09214 * 359.69991 * 15 14 12 30 30 H 1.08000 * 119.85804 * 180.02562 * 18 16 15 31 31 H 1.08001 * 120.04688 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 8 1.5193 -4.9195 -0.0024 12 6 2.2531 -6.0493 -0.0031 13 8 3.4661 -5.9857 -0.0026 14 6 1.5824 -7.3656 -0.0043 15 6 0.1883 -7.4420 -0.0053 16 6 -0.4321 -8.6765 -0.0070 17 9 -1.7809 -8.7536 -0.0075 18 6 0.3273 -9.8360 -0.0082 19 6 1.7085 -9.7650 -0.0082 20 7 2.5114 -11.0084 -0.0100 21 8 3.7280 -10.9478 -0.0105 22 8 1.9557 -12.0923 -0.0110 23 6 2.3399 -8.5382 -0.0065 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5566 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8726 -3.6046 0.8878 28 1 2.8714 -3.6038 -0.8921 29 1 -0.4035 -6.5386 -0.0004 30 1 -0.1617 -10.7990 -0.0099 31 1 3.4187 -8.4852 -0.0070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731530181.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:08 Heat of formation + Delta-G solvation = -112.707963 kcal Electronic energy + Delta-G solvation = -20702.570059 eV Core-core repulsion = 16867.170309 eV Total energy + Delta-G solvation = -3835.399750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.62992 -42.60003 -40.70402 -39.14138 -36.96185 -36.45962 -33.55373 -32.86031 -31.67181 -30.39755 -27.17165 -25.97849 -24.48771 -23.09535 -21.69343 -20.99985 -19.78594 -19.11267 -17.95298 -17.83802 -17.31315 -17.00686 -16.65488 -16.46994 -16.24133 -16.14838 -15.92805 -14.61781 -14.08812 -13.81751 -13.41495 -13.06361 -12.90244 -12.70001 -12.46813 -11.94288 -11.66043 -11.49633 -11.46513 -11.23265 -10.93848 -10.90403 -10.63062 -10.31805 -9.88687 -9.81880 -9.77902 -9.44232 -8.55504 -6.21554 -4.26723 -0.76335 -0.15623 0.73635 0.81658 1.99001 2.54607 2.86744 3.21237 3.21729 3.28404 3.31828 3.86301 3.87572 4.02992 4.15486 4.30136 4.55841 4.85471 4.91508 5.09277 5.15582 5.33453 5.61233 5.81835 5.87807 5.92614 6.42349 6.57029 7.21745 7.36797 7.44998 7.66363 7.81850 8.09320 8.78543 9.38686 10.89773 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.030558 B = 0.003105 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.085121 B = 9015.732087 C = 9911.369819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.347 6.347 12 C 0.503 3.497 13 O -0.494 6.494 14 C -0.081 4.081 15 C -0.046 4.046 16 C 0.101 3.899 17 F -0.114 7.114 18 C -0.069 4.069 19 C -0.029 4.029 20 N 0.029 4.971 21 O -0.143 6.143 22 O -0.150 6.150 23 C -0.007 4.007 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.177 0.823 30 H 0.172 0.828 31 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 -18.884 -0.011 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.079 0.921 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.263 6.263 12 C 0.346 3.654 13 O -0.383 6.383 14 C -0.084 4.084 15 C -0.064 4.064 16 C 0.081 3.919 17 F -0.092 7.092 18 C -0.088 4.088 19 C -0.112 4.112 20 N 0.551 4.449 21 O -0.361 6.361 22 O -0.367 6.367 23 C -0.027 4.027 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.195 0.805 30 H 0.189 0.811 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.494 -18.076 -0.005 18.137 hybrid contribution 0.426 0.622 -0.011 0.755 sum -1.067 -17.453 -0.015 17.486 Atomic orbital electron populations 1.69963 1.06119 1.27177 1.49471 1.24979 0.94935 0.99468 0.94681 0.86451 0.79774 0.82667 0.78324 1.20412 1.20993 1.19656 1.20940 0.93226 0.89936 1.52649 0.92142 1.19203 0.94168 0.88859 0.99030 1.23847 0.96596 0.77656 1.01549 1.86561 1.41942 1.15578 1.82245 1.20495 0.85626 0.85075 0.74210 1.90873 1.14485 1.88031 1.44948 1.18951 0.92480 0.91597 1.05340 1.22116 0.94591 0.98767 0.90965 1.17042 0.78204 0.92590 1.04053 1.91636 1.27017 1.96887 1.93685 1.21111 0.91436 1.00971 0.95330 1.20485 0.90945 0.85077 1.14666 1.43376 1.01436 1.02165 0.97916 1.94606 0.94966 1.93846 1.52698 1.94562 1.74157 1.14920 1.53083 1.21145 1.03532 0.88094 0.89898 0.92589 0.95219 0.95205 0.91709 0.91716 0.80518 0.81056 0.80706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.53 -14.12 9.11 -34.44 -0.31 -14.43 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.59 5.35 -27.88 -0.15 0.44 16 10 C 0.08 1.50 5.41 37.16 0.20 1.71 16 11 O -0.35 -5.91 9.47 -40.53 -0.38 -6.30 16 12 C 0.50 7.52 7.90 34.61 0.27 7.79 16 13 O -0.49 -8.54 16.13 -19.24 -0.31 -8.85 16 14 C -0.08 -0.90 5.87 -104.99 -0.62 -1.52 16 15 C -0.05 -0.42 9.60 -39.09 -0.38 -0.79 16 16 C 0.10 0.83 7.29 -39.47 -0.29 0.54 16 17 F -0.11 -0.98 17.26 2.25 0.04 -0.94 16 18 C -0.07 -0.54 9.53 -39.42 -0.38 -0.91 16 19 C -0.03 -0.28 6.84 -80.02 -0.55 -0.82 16 20 N 0.03 0.32 4.45 33.93 0.15 0.47 16 21 O -0.14 -1.77 18.44 -29.46 -0.54 -2.31 16 22 O -0.15 -1.72 18.44 -29.46 -0.54 -2.27 16 23 C -0.01 -0.08 9.10 -39.17 -0.36 -0.43 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.18 1.55 7.61 -52.49 -0.40 1.15 16 30 H 0.17 1.02 7.60 -52.49 -0.40 0.62 16 31 H 0.18 1.80 7.19 -52.49 -0.38 1.42 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -29.25 300.82 -6.39 -35.65 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: -2.41 Total: -4.20 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -2.64 Total: -6.84 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.89 Total: -24.08 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -1.78 Total: -19.72 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.04 Total: -0.94 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.25 -6.39 -35.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731530181.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.061 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds