Wall clock time and date at job start Tue Mar 31 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99715 * 2 1 4 4 H 1.48500 * 109.46863 * 269.99680 * 3 2 1 5 5 H 1.48500 * 109.47326 * 29.99981 * 3 2 1 6 6 H 1.48499 * 109.46824 * 149.99920 * 3 2 1 7 7 C 1.37872 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99909 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47304 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.47210 * 180.02562 * 10 9 7 12 12 C 1.34714 * 116.99952 * 180.02562 * 11 10 9 13 13 O 1.21467 * 120.00100 * 0.02562 * 12 11 10 14 14 C 1.47731 * 120.00143 * 180.02562 * 12 11 10 15 15 C 1.39625 * 120.13300 * 0.02562 * 14 12 11 16 16 C 1.38162 * 119.81761 * 179.97438 * 15 14 12 17 17 F 1.35101 * 119.95269 * 179.97438 * 16 15 14 18 18 C 1.38606 * 120.09521 * 359.97438 * 16 15 14 19 19 C 1.38302 * 120.28106 * 359.97438 * 18 16 15 20 20 N 1.48015 * 119.91091 * 180.02562 * 19 18 16 21 21 O 1.21803 * 120.00033 * 179.97438 * 20 19 18 22 22 O 1.21800 * 120.00026 * 359.97438 * 20 19 18 23 23 C 1.37980 * 120.17663 * 0.02562 * 19 18 16 24 24 H 0.97006 * 120.00127 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46515 * 60.00250 * 9 7 2 26 26 H 1.09000 * 109.47434 * 300.00463 * 9 7 2 27 27 H 1.09007 * 109.46641 * 60.00365 * 10 9 7 28 28 H 1.08992 * 109.47448 * 300.00875 * 10 9 7 29 29 H 1.07999 * 120.09214 * 359.69991 * 15 14 12 30 30 H 1.08000 * 119.85804 * 180.02562 * 18 16 15 31 31 H 1.08001 * 120.04688 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 8 1.5193 -4.9195 -0.0024 12 6 2.2531 -6.0493 -0.0031 13 8 3.4661 -5.9857 -0.0026 14 6 1.5824 -7.3656 -0.0043 15 6 0.1883 -7.4420 -0.0053 16 6 -0.4321 -8.6765 -0.0070 17 9 -1.7809 -8.7536 -0.0075 18 6 0.3273 -9.8360 -0.0082 19 6 1.7085 -9.7650 -0.0082 20 7 2.5114 -11.0084 -0.0100 21 8 3.7280 -10.9478 -0.0105 22 8 1.9557 -12.0923 -0.0110 23 6 2.3399 -8.5382 -0.0065 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5566 -0.8904 26 1 0.6247 -2.5571 0.8896 27 1 2.8726 -3.6046 0.8878 28 1 2.8714 -3.6038 -0.8921 29 1 -0.4035 -6.5386 -0.0004 30 1 -0.1617 -10.7990 -0.0099 31 1 3.4187 -8.4852 -0.0070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731530181.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:08 Heat of formation + Delta-G solvation = -127.247283 kcal Electronic energy + Delta-G solvation = -20703.200531 eV Core-core repulsion = 16867.170309 eV Total energy + Delta-G solvation = -3836.030222 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.32619 -43.46139 -41.87011 -40.12621 -37.89201 -37.80264 -35.48624 -33.80218 -32.52193 -32.19204 -28.04461 -27.48501 -25.88190 -23.90006 -23.14218 -22.41469 -20.79946 -19.97624 -19.04718 -18.80565 -18.34019 -18.14317 -17.79948 -17.72436 -17.30232 -17.14079 -16.98581 -16.49538 -15.26788 -14.87753 -14.71450 -14.38128 -14.03347 -13.78591 -13.53912 -13.20325 -13.08013 -12.84283 -12.65392 -12.62359 -12.55555 -12.40825 -12.08405 -11.63743 -11.56015 -11.43302 -11.12646 -10.61605 -10.53787 -8.28156 -6.40588 -1.58586 -0.99544 -0.10817 -0.01978 0.98803 1.32113 1.42658 1.43989 1.54743 1.91334 2.38122 2.45123 2.99714 3.07251 3.10221 3.25292 3.33325 3.70102 3.90207 4.11297 4.20687 4.20818 4.36026 4.51411 4.67541 4.82996 5.09041 5.12136 5.42400 5.46341 5.71432 6.05093 6.29849 6.41566 6.73284 7.29466 8.84064 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.030558 B = 0.003105 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.085121 B = 9015.732087 C = 9911.369819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.550 4.550 8 H 0.066 0.934 9 C 0.030 3.970 10 C 0.091 3.909 11 O -0.350 6.350 12 C 0.508 3.492 13 O -0.520 6.520 14 C -0.091 4.091 15 C -0.033 4.033 16 C 0.111 3.889 17 F -0.111 7.111 18 C -0.042 4.042 19 C -0.032 4.032 20 N 0.030 4.970 21 O -0.178 6.178 22 O -0.137 6.137 23 C 0.000 4.000 24 H 0.268 0.732 25 H 0.010 0.990 26 H 0.011 0.989 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.182 0.818 30 H 0.198 0.802 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.584 -19.709 -0.018 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.588 4.588 8 H 0.084 0.916 9 C -0.007 4.007 10 C 0.018 3.982 11 O -0.266 6.266 12 C 0.352 3.648 13 O -0.411 6.411 14 C -0.093 4.093 15 C -0.052 4.052 16 C 0.091 3.909 17 F -0.089 7.089 18 C -0.062 4.062 19 C -0.115 4.115 20 N 0.550 4.450 21 O -0.388 6.388 22 O -0.359 6.359 23 C -0.019 4.019 24 H 0.076 0.924 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.199 0.801 30 H 0.215 0.785 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.772 -18.896 -0.013 18.979 hybrid contribution 0.407 0.740 -0.009 0.845 sum -1.365 -18.156 -0.022 18.208 Atomic orbital electron populations 1.70076 1.07699 1.28249 1.50421 1.25897 0.95793 1.03234 0.94164 0.85380 0.78610 0.78071 0.78608 1.19675 1.20585 1.18758 1.21372 0.93771 0.91225 1.52399 0.91629 1.19001 0.94375 0.90281 0.97085 1.23326 0.95166 0.77983 1.01718 1.86524 1.41812 1.15438 1.82834 1.20990 0.85414 0.85445 0.72925 1.90862 1.15634 1.88314 1.46270 1.18493 0.93033 0.89524 1.08250 1.22129 0.93724 0.99672 0.89690 1.16834 0.78209 0.92071 1.03786 1.91657 1.26816 1.96815 1.93631 1.21336 0.90462 1.01987 0.92393 1.20378 0.91333 0.84043 1.15738 1.43525 1.01399 1.02511 0.97529 1.94624 0.95559 1.94062 1.54585 1.94542 1.73977 1.15427 1.51978 1.21040 1.03385 0.88148 0.89313 0.92360 0.97123 0.97108 0.91537 0.91524 0.80082 0.78459 0.81181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.23 13.29 21.45 0.28 -52.95 16 2 C 0.01 0.46 5.46 84.65 0.46 0.92 16 3 Si 0.97 42.06 29.54 68.60 2.03 44.09 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.55 -29.55 9.11 25.60 0.23 -29.32 16 8 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.47 5.35 29.85 0.16 1.63 16 10 C 0.09 3.65 5.41 71.98 0.39 4.04 16 11 O -0.35 -11.92 9.47 -56.24 -0.53 -12.45 16 12 C 0.51 15.03 7.90 70.33 0.56 15.58 16 13 O -0.52 -18.01 16.13 19.94 0.32 -17.69 16 14 C -0.09 -1.91 5.87 -20.11 -0.12 -2.02 16 15 C -0.03 -0.55 9.60 22.59 0.22 -0.33 16 16 C 0.11 1.50 7.29 22.34 0.16 1.66 16 17 F -0.11 -1.57 17.26 44.97 0.78 -0.79 16 18 C -0.04 -0.52 9.53 22.37 0.21 -0.31 16 19 C -0.03 -0.54 6.84 36.33 0.25 -0.30 16 20 N 0.03 0.63 4.45 -46.57 -0.21 0.43 16 21 O -0.18 -4.33 18.44 18.88 0.35 -3.98 16 22 O -0.14 -2.82 18.44 18.89 0.35 -2.47 16 23 C 0.00 0.01 9.10 22.54 0.21 0.21 16 24 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 25 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.01 0.55 8.14 -2.39 -0.02 0.54 16 27 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 28 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.18 2.89 7.61 -2.91 -0.02 2.87 16 30 H 0.20 1.49 7.60 -2.91 -0.02 1.46 16 31 H 0.17 3.47 7.19 -2.91 -0.02 3.45 16 Total: -1.00 -62.43 300.82 7.28 -55.15 By element: Atomic # 1 Polarization: -2.29 SS G_CDS: 1.18 Total: -1.10 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 2.73 Total: -8.23 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.08 Total: -52.52 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: 0.49 Total: -36.59 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.78 Total: -0.79 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -62.43 7.28 -55.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731530181.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.099 kcal (2) G-P(sol) polarization free energy of solvation -62.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds