Wall clock time and date at job start Tue Mar 31 2020 06:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47323 * 2 1 4 4 C 1.50698 * 109.47658 * 239.99812 * 2 1 3 5 5 H 1.08003 * 120.00248 * 275.00622 * 4 2 1 6 6 C 1.37879 * 120.00061 * 94.99612 * 4 2 1 7 7 N 1.31514 * 120.00065 * 184.92370 * 6 4 2 8 8 Si 1.86799 * 120.00086 * 4.91820 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.83083 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.83377 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.83552 * 8 6 4 12 12 O 1.45202 * 109.47175 * 119.99971 * 2 1 3 13 13 C 1.34713 * 116.99844 * 270.00117 * 12 2 1 14 14 O 1.21470 * 120.00348 * 359.97438 * 13 12 2 15 15 C 1.47739 * 120.00032 * 179.97438 * 13 12 2 16 16 C 1.39622 * 120.13595 * 359.72703 * 15 13 12 17 17 C 1.38152 * 119.82045 * 179.76747 * 16 15 13 18 18 F 1.35103 * 119.95447 * 180.27695 * 17 16 15 19 19 C 1.38604 * 120.09752 * 0.50264 * 17 16 15 20 20 C 1.38313 * 120.27631 * 359.75064 * 19 17 16 21 21 N 1.48011 * 119.91007 * 180.02562 * 20 19 17 22 22 O 1.21804 * 119.99826 * 179.97438 * 21 20 19 23 23 O 1.21794 * 120.00299 * 359.97438 * 21 20 19 24 24 C 1.37970 * 120.17882 * 359.97438 * 20 19 17 25 25 H 1.08992 * 109.47218 * 175.03440 * 1 2 3 26 26 H 1.09005 * 109.46733 * 55.03584 * 1 2 3 27 27 H 1.09000 * 109.47120 * 295.03535 * 1 2 3 28 28 H 0.96997 * 119.99915 * 179.97438 * 7 6 4 29 29 H 1.08006 * 120.08651 * 0.02562 * 16 15 13 30 30 H 1.07996 * 119.86286 * 179.76548 * 19 17 16 31 31 H 1.08001 * 120.05114 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2290 6 6 2.3603 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3135 1.8790 -2.3175 9 1 3.5990 2.3949 -1.7822 10 1 2.1057 2.3989 -3.6928 11 1 1.1985 2.3274 -1.4451 12 8 2.0140 -0.6845 1.1856 13 6 2.2178 0.0667 2.2851 14 8 1.9977 1.2609 2.2542 15 6 2.7091 -0.5618 3.5285 16 6 2.9576 -1.9352 3.5690 17 6 3.4214 -2.5154 4.7338 18 9 3.6681 -3.8431 4.7743 19 6 3.6297 -1.7382 5.8624 20 6 3.3798 -0.3782 5.8284 21 7 3.6055 0.4441 7.0381 22 8 3.3864 1.6419 7.0099 23 8 4.0103 -0.0769 8.0619 24 6 2.9217 0.2140 4.6695 25 1 -0.3633 -1.0237 -0.0889 26 1 -0.3633 0.5890 -0.8422 27 1 -0.3633 0.4349 0.9311 28 1 2.9363 -0.1049 -4.2556 29 1 2.7916 -2.5415 2.6907 30 1 3.9888 -2.1963 6.7720 31 1 2.7277 1.2762 4.6451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709895.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:24 Heat of formation + Delta-G solvation = -107.105530 kcal Electronic energy + Delta-G solvation = -21376.920818 eV Core-core repulsion = 17541.764008 eV Total energy + Delta-G solvation = -3835.156810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.51691 -42.49944 -40.45196 -38.94308 -36.86601 -36.17310 -33.39612 -32.64585 -31.52692 -30.67710 -27.04402 -25.65788 -25.19600 -22.97288 -21.94834 -20.50695 -19.47173 -19.01572 -17.85697 -17.78281 -17.18853 -17.08459 -16.81563 -16.27202 -16.17771 -15.92794 -15.47269 -14.46561 -13.96603 -13.27911 -13.23468 -12.81946 -12.79982 -12.65537 -12.50122 -11.98747 -11.84819 -11.55728 -11.40724 -11.30847 -11.16361 -10.87874 -10.45922 -10.15260 -10.01170 -9.77128 -9.64632 -9.34767 -8.88093 -6.43441 -4.49312 -0.63376 0.00676 0.86123 0.93178 2.19962 2.85081 3.11045 3.12341 3.18810 3.22879 3.34981 4.01065 4.02753 4.12014 4.19516 4.32492 4.68897 4.89107 5.05742 5.12774 5.26791 5.53283 5.75031 5.95572 6.04020 6.23346 6.29902 6.45854 6.95009 7.02708 7.28751 7.32043 7.92494 8.28459 8.64731 9.14015 10.67287 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.023106 B = 0.004341 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.514216 B = 6449.080828 C = 7218.729336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.182 3.818 3 H 0.051 0.949 4 C -0.523 4.523 5 H 0.087 0.913 6 C 0.085 3.915 7 N -0.876 5.876 8 Si 0.869 3.131 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.260 1.260 12 O -0.338 6.338 13 C 0.497 3.503 14 O -0.503 6.503 15 C -0.079 4.079 16 C -0.045 4.045 17 C 0.100 3.900 18 F -0.116 7.116 19 C -0.072 4.072 20 C -0.030 4.030 21 N 0.030 4.970 22 O -0.145 6.145 23 O -0.153 6.153 24 C -0.010 4.010 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.273 0.727 29 H 0.177 0.823 30 H 0.170 0.830 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.626 -2.466 16.133 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.130 3.870 3 H 0.068 0.932 4 C -0.560 4.560 5 H 0.105 0.895 6 C -0.121 4.121 7 N -0.511 5.511 8 Si 0.694 3.306 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.184 1.184 12 O -0.254 6.254 13 C 0.340 3.660 14 O -0.394 6.394 15 C -0.081 4.081 16 C -0.064 4.064 17 C 0.079 3.921 18 F -0.094 7.094 19 C -0.092 4.092 20 C -0.113 4.113 21 N 0.552 4.448 22 O -0.363 6.363 23 O -0.369 6.369 24 C -0.029 4.029 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.195 0.805 30 H 0.188 0.812 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.500 -2.570 15.253 15.476 hybrid contribution 0.154 0.982 0.162 1.007 sum 0.654 -1.587 15.415 15.510 Atomic orbital electron populations 1.22255 0.97057 1.01894 0.99967 1.21172 0.91735 0.94285 0.79794 0.93150 1.20757 1.46047 0.96359 0.92806 0.89473 1.24914 0.93272 0.98750 0.95143 1.69838 1.43126 1.36461 1.01725 0.86970 0.80026 0.85508 0.78075 1.19433 1.20477 1.18403 1.86744 1.75245 1.43111 1.20258 1.20611 0.75537 0.85439 0.84451 1.90828 1.48274 1.15774 1.84498 1.19148 1.03139 0.92789 0.93011 1.22121 0.91038 0.94958 0.98266 1.17051 1.02506 0.78872 0.93630 1.91623 1.91804 1.29191 1.96777 1.21066 0.96634 0.91288 1.00180 1.20487 1.12390 0.91243 0.87156 1.43385 0.98188 1.01382 1.01875 1.94601 1.54241 0.96867 1.90574 1.94549 1.46782 1.75490 1.20097 1.21173 0.90225 1.03176 0.88322 0.92175 0.91618 0.95017 0.91722 0.80519 0.81204 0.80808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.53 37.16 0.35 -2.78 16 2 C 0.18 4.19 2.22 -27.89 -0.06 4.13 16 3 H 0.05 1.22 4.31 -51.93 -0.22 0.99 16 4 C -0.52 -13.81 9.25 -34.44 -0.32 -14.12 16 5 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 7 N -0.88 -24.80 13.96 55.43 0.77 -24.03 16 8 Si 0.87 20.25 26.99 -169.99 -4.59 15.66 16 9 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.26 -5.87 6.82 56.52 0.39 -5.48 16 12 O -0.34 -6.82 9.12 -40.53 -0.37 -7.19 16 13 C 0.50 8.83 7.87 34.61 0.27 9.10 16 14 O -0.50 -10.12 15.60 -19.24 -0.30 -10.42 16 15 C -0.08 -1.04 5.87 -104.99 -0.62 -1.65 16 16 C -0.04 -0.50 9.60 -39.10 -0.38 -0.87 16 17 C 0.10 0.95 7.29 -39.48 -0.29 0.67 16 18 F -0.12 -1.12 17.26 2.25 0.04 -1.08 16 19 C -0.07 -0.66 9.53 -39.42 -0.38 -1.03 16 20 C -0.03 -0.33 6.84 -80.02 -0.55 -0.88 16 21 N 0.03 0.37 4.45 33.93 0.15 0.52 16 22 O -0.14 -1.96 18.44 -29.46 -0.54 -2.51 16 23 O -0.15 -1.91 18.44 -29.46 -0.54 -2.45 16 24 C -0.01 -0.12 9.10 -39.17 -0.36 -0.47 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.18 1.88 7.61 -52.48 -0.40 1.48 16 30 H 0.17 1.21 7.60 -52.49 -0.40 0.82 16 31 H 0.17 2.11 7.19 -52.49 -0.38 1.74 16 LS Contribution 295.37 15.07 4.45 4.45 Total: -1.00 -28.78 295.37 -5.58 -34.36 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -2.24 Total: -1.59 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -2.41 Total: -5.72 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.92 Total: -23.50 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.76 Total: -22.57 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.59 Total: 15.66 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.78 -5.58 -34.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709895.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.747 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds