Wall clock time and date at job start Tue Mar 31 2020 06:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47131 * 2 1 4 4 C 1.50698 * 109.47033 * 120.00304 * 2 1 3 5 5 H 1.07998 * 120.00168 * 120.00307 * 4 2 1 6 6 C 1.37874 * 119.99787 * 299.99805 * 4 2 1 7 7 N 1.31517 * 120.00409 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99941 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47079 * 89.99977 * 8 6 4 10 10 H 1.48503 * 109.47097 * 209.99734 * 8 6 4 11 11 H 1.48499 * 109.47292 * 330.00052 * 8 6 4 12 12 O 1.45201 * 109.47109 * 240.00218 * 2 1 3 13 13 C 1.34710 * 117.00387 * 90.00006 * 12 2 1 14 14 O 1.21466 * 119.99447 * 0.02562 * 13 12 2 15 15 C 1.47724 * 120.00059 * 180.02562 * 13 12 2 16 16 C 1.39625 * 120.14130 * 359.72033 * 15 13 12 17 17 C 1.38159 * 119.82175 * 180.25653 * 16 15 13 18 18 F 1.35095 * 119.94977 * 180.02562 * 17 16 15 19 19 C 1.38596 * 120.09616 * 0.04369 * 17 16 15 20 20 C 1.38310 * 120.28302 * 359.95522 * 19 17 16 21 21 N 1.48016 * 119.91123 * 180.02562 * 20 19 17 22 22 O 1.21801 * 119.99847 * 179.97438 * 21 20 19 23 23 O 1.21792 * 119.99960 * 359.97438 * 21 20 19 24 24 C 1.37968 * 120.17619 * 0.02562 * 20 19 17 25 25 H 1.08999 * 109.46843 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47209 * 300.00013 * 1 2 3 27 27 H 1.09003 * 109.46718 * 60.00157 * 1 2 3 28 28 H 0.96993 * 120.00064 * 180.02562 * 7 6 4 29 29 H 1.07994 * 120.08616 * 0.25527 * 16 15 13 30 30 H 1.08001 * 119.85874 * 179.97438 * 19 17 16 31 31 H 1.08003 * 120.05010 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.6305 -0.5441 4.4118 10 1 1.3444 -0.9490 5.1122 11 1 2.4880 -2.5655 3.7122 12 8 2.0140 -0.6844 -1.1856 13 6 2.2179 0.0667 -2.2851 14 8 1.9978 1.2609 -2.2541 15 6 2.7091 -0.5619 -3.5284 16 6 2.9686 -1.9333 -3.5655 17 6 3.4329 -2.5134 -4.7303 18 9 3.6843 -3.8402 -4.7693 19 6 3.6414 -1.7361 -5.8587 20 6 3.3857 -0.3773 -5.8265 21 7 3.6108 0.4450 -7.0366 22 8 3.3857 1.6417 -7.0102 23 8 4.0210 -0.0752 -8.0586 24 6 2.9215 0.2139 -4.6696 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1612 3.4844 29 1 2.8068 -2.5389 -2.6861 30 1 4.0048 -2.1936 -6.7671 31 1 2.7221 1.2751 -4.6469 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709896.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:28 Heat of formation + Delta-G solvation = -108.181532 kcal Electronic energy + Delta-G solvation = -21284.388090 eV Core-core repulsion = 17449.184621 eV Total energy + Delta-G solvation = -3835.203469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.51039 -42.47323 -40.37082 -38.86142 -36.83967 -36.05085 -33.52943 -32.62554 -31.48185 -29.73091 -27.01547 -25.53968 -25.13679 -22.94673 -21.97866 -20.57109 -19.36078 -18.98804 -17.83114 -17.53608 -17.18710 -16.93680 -16.65259 -16.24615 -16.16358 -15.59726 -15.34350 -14.64766 -13.94010 -13.31894 -13.17296 -12.82553 -12.62848 -12.39147 -12.10195 -11.82159 -11.53002 -11.41930 -11.38104 -11.21656 -11.02190 -10.54192 -10.44486 -10.19361 -10.11838 -9.80506 -9.62284 -9.11162 -8.64241 -6.32755 -4.41133 -0.60757 0.04309 0.88711 0.95916 2.25432 2.95703 3.16026 3.18929 3.22830 3.26801 3.37122 4.03721 4.04967 4.17917 4.27552 4.35469 4.74690 5.00924 5.08842 5.15480 5.32663 5.60114 5.78069 6.06569 6.40962 6.68511 6.70847 6.86303 7.34655 7.37802 7.53232 7.69331 7.93744 8.25179 8.66436 9.25038 10.74595 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025805 B = 0.003909 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.817611 B = 7161.825178 C = 7928.565445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.217 3.783 3 H 0.051 0.949 4 C -0.526 4.526 5 H 0.070 0.930 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.914 3.086 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.271 1.271 12 O -0.346 6.346 13 C 0.498 3.502 14 O -0.497 6.497 15 C -0.076 4.076 16 C -0.047 4.047 17 C 0.099 3.901 18 F -0.117 7.117 19 C -0.073 4.073 20 C -0.029 4.029 21 N 0.030 4.970 22 O -0.144 6.144 23 O -0.154 6.154 24 C -0.010 4.010 25 H 0.039 0.961 26 H 0.102 0.898 27 H 0.017 0.983 28 H 0.268 0.732 29 H 0.176 0.824 30 H 0.170 0.830 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -5.997 -13.793 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.165 3.835 3 H 0.069 0.931 4 C -0.564 4.564 5 H 0.088 0.912 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.740 3.260 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.195 1.195 12 O -0.262 6.262 13 C 0.340 3.660 14 O -0.387 6.387 15 C -0.078 4.078 16 C -0.065 4.065 17 C 0.079 3.921 18 F -0.095 7.095 19 C -0.093 4.093 20 C -0.112 4.112 21 N 0.552 4.448 22 O -0.362 6.362 23 O -0.370 6.370 24 C -0.029 4.029 25 H 0.058 0.942 26 H 0.121 0.879 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.194 0.806 30 H 0.188 0.812 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.591 -5.990 -12.982 14.742 hybrid contribution 0.316 -0.339 0.517 0.694 sum 3.907 -6.329 -12.465 14.516 Atomic orbital electron populations 1.22196 0.97144 1.00384 1.01721 1.20825 0.91640 0.94095 0.76944 0.93116 1.20974 1.33028 1.13783 0.88638 0.91153 1.24883 0.94749 0.95060 0.99116 1.69882 1.35625 1.22414 1.24482 0.86241 0.78629 0.79853 0.81244 1.20300 1.20839 1.19538 1.86537 1.75508 1.43159 1.20951 1.20439 0.75828 0.85345 0.84402 1.90843 1.47737 1.15688 1.84392 1.19152 1.02822 0.92751 0.93094 1.22103 0.91210 0.94982 0.98247 1.17048 1.02577 0.78851 0.93659 1.91615 1.91751 1.29330 1.96789 1.21051 0.96782 0.91296 1.00145 1.20486 1.12304 0.91259 0.87183 1.43385 0.98197 1.01385 1.01868 1.94603 1.54136 0.96950 1.90512 1.94547 1.46665 1.75486 1.20291 1.21180 0.90172 1.03205 0.88320 0.94201 0.87919 0.96352 0.92172 0.80645 0.81240 0.80757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 9.33 37.16 0.35 -3.34 16 2 C 0.22 5.37 2.56 -27.88 -0.07 5.30 16 3 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 4 C -0.53 -13.79 8.90 -34.44 -0.31 -14.10 16 5 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -23.98 11.32 55.43 0.63 -23.35 16 8 Si 0.91 20.03 29.54 -169.99 -5.02 15.01 16 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 12 O -0.35 -7.25 9.12 -40.52 -0.37 -7.62 16 13 C 0.50 9.20 7.87 34.61 0.27 9.48 16 14 O -0.50 -10.53 15.60 -19.24 -0.30 -10.83 16 15 C -0.08 -1.03 5.87 -104.99 -0.62 -1.65 16 16 C -0.05 -0.52 9.60 -39.09 -0.38 -0.90 16 17 C 0.10 0.96 7.29 -39.48 -0.29 0.67 16 18 F -0.12 -1.13 17.26 2.25 0.04 -1.09 16 19 C -0.07 -0.68 9.53 -39.42 -0.38 -1.05 16 20 C -0.03 -0.33 6.84 -80.02 -0.55 -0.88 16 21 N 0.03 0.38 4.45 33.93 0.15 0.53 16 22 O -0.14 -1.98 18.44 -29.46 -0.54 -2.52 16 23 O -0.15 -1.94 18.44 -29.46 -0.54 -2.49 16 24 C -0.01 -0.12 9.10 -39.17 -0.36 -0.47 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.10 2.62 6.07 -51.93 -0.32 2.30 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.18 1.88 7.61 -52.49 -0.40 1.48 16 30 H 0.17 1.23 7.60 -52.49 -0.40 0.83 16 31 H 0.18 2.20 7.19 -52.48 -0.38 1.82 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -28.11 295.72 -6.17 -34.28 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -2.25 Total: -1.02 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -2.41 Total: -5.35 kcal Atomic # 7 Polarization: -23.60 SS G_CDS: 0.78 Total: -22.82 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -1.76 Total: -23.46 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.11 -6.17 -34.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709896.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.906 kcal (2) G-P(sol) polarization free energy of solvation -28.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds