Wall clock time and date at job start Tue Mar 31 2020 06:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46845 * 2 1 4 4 C 1.50696 * 109.47325 * 119.99705 * 2 1 3 5 5 O 1.21297 * 119.99686 * 88.72303 * 4 2 1 6 6 N 1.34772 * 120.00504 * 268.72031 * 4 2 1 7 7 C 1.37098 * 120.00367 * 185.08489 * 6 4 2 8 8 H 1.07998 * 120.00128 * 7.51862 * 7 6 4 9 9 C 1.38954 * 120.00061 * 187.52583 * 7 6 4 10 10 N 1.31410 * 120.00019 * 28.56832 * 9 7 6 11 11 Si 1.86800 * 119.99886 * 208.56954 * 9 7 6 12 12 H 1.48493 * 109.47390 * 94.98368 * 11 9 7 13 13 H 1.48499 * 109.47202 * 214.98389 * 11 9 7 14 14 H 1.48508 * 109.47098 * 334.98205 * 11 9 7 15 15 C 1.46498 * 119.99797 * 5.07708 * 6 4 2 16 16 C 1.50702 * 109.47084 * 92.33886 * 15 6 4 17 17 O 1.20827 * 119.99689 * 0.02562 * 16 15 6 18 18 O 1.34222 * 120.00261 * 179.97438 * 16 15 6 19 19 C 1.50704 * 109.47580 * 240.00378 * 2 1 3 20 20 C 1.38414 * 122.54231 * 119.99507 * 19 2 1 21 21 C 1.33395 * 114.92270 * 179.73333 * 20 19 2 22 22 S 1.75883 * 109.59153 * 0.26573 * 21 20 19 23 23 C 1.33392 * 122.53448 * 300.25442 * 19 2 1 24 24 H 1.08995 * 109.47106 * 302.28394 * 1 2 3 25 25 H 1.08997 * 109.47451 * 62.29416 * 1 2 3 26 26 H 1.09010 * 109.46487 * 182.28681 * 1 2 3 27 27 H 0.96996 * 119.99995 * 180.02562 * 10 9 7 28 28 H 1.08995 * 109.47555 * 212.33837 * 15 6 4 29 29 H 1.09002 * 109.47282 * 332.34361 * 15 6 4 30 30 H 0.96700 * 117.00632 * 180.02562 * 18 16 15 31 31 H 1.08000 * 122.54011 * 359.97438 * 20 19 2 32 32 H 1.07997 * 125.20482 * 180.25101 * 21 20 19 33 33 H 1.07998 * 125.20392 * 359.96928 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.2125 -1.9096 1.2073 6 7 2.2816 -0.0131 2.3566 7 6 2.8365 -0.6399 3.4423 8 1 3.1857 -1.6584 3.3577 9 6 2.9496 0.0351 4.6515 10 7 2.0911 0.9815 4.9585 11 14 4.3220 -0.4026 5.8408 12 1 5.4721 0.5123 5.6279 13 1 3.8313 -0.2646 7.2355 14 1 4.7538 -1.8038 5.6043 15 6 1.9597 1.4146 2.4205 16 6 0.5712 1.5920 2.9787 17 8 -0.0823 0.6250 3.2914 18 8 0.0607 2.8242 3.1293 19 6 2.0324 -0.7103 -1.2305 20 6 2.8306 -0.0888 -2.1752 21 6 3.1927 -0.8610 -3.2009 22 16 2.5018 -2.4664 -3.0032 23 6 1.7374 -1.9842 -1.4942 24 1 -0.3633 0.5489 0.8688 25 1 -0.3634 0.4778 -0.9098 26 1 -0.3633 -1.0270 0.0410 27 1 2.1703 1.4529 5.8025 28 1 2.6779 1.9205 3.0656 29 1 2.0061 1.8427 1.4191 30 1 -0.8336 2.8877 3.4916 31 1 3.1402 0.9420 -2.0866 32 1 3.8147 -0.5483 -4.0265 33 1 1.1267 -2.6231 -0.8737 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736198507.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:08 Heat of formation + Delta-G solvation = -73.945566 kcal Electronic energy + Delta-G solvation = -20739.527167 eV Core-core repulsion = 17472.021457 eV Total energy + Delta-G solvation = -3267.505710 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.75068 -38.67563 -37.23364 -35.20224 -34.44252 -32.70980 -31.52785 -28.43670 -27.70271 -25.47665 -24.48284 -22.30876 -21.10067 -19.38281 -18.00672 -17.38968 -17.10343 -16.92481 -16.15541 -15.56295 -15.11012 -14.54317 -14.46943 -13.97271 -13.68995 -13.19779 -12.95197 -12.56822 -12.37169 -12.06410 -12.03779 -11.82943 -11.67274 -11.36802 -11.18415 -11.06035 -10.86761 -10.46756 -10.43743 -10.28885 -10.13450 -9.57819 -9.02681 -8.52538 -8.42813 -8.01776 -7.99608 -6.51898 -3.84888 1.36636 1.97362 2.28545 3.02134 3.11812 3.23707 3.30074 3.47465 3.64201 4.06051 4.26493 4.70541 5.01149 5.10458 5.36940 5.40260 5.55043 5.65277 5.76159 5.92188 6.03818 6.13950 6.15051 6.36211 6.42147 6.53736 6.54118 6.73634 6.90689 7.50273 7.55929 7.94096 8.34363 9.06544 9.07712 9.29832 9.82381 10.57394 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.005957 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.136964 B = 4698.837722 C = 5547.581193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 H 0.087 0.913 4 C 0.464 3.536 5 O -0.568 6.568 6 N -0.430 5.430 7 C -0.305 4.305 8 H 0.111 0.889 9 C 0.031 3.969 10 N -0.874 5.874 11 Si 0.924 3.076 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.142 3.858 16 C 0.492 3.508 17 O -0.499 6.499 18 O -0.537 6.537 19 C -0.093 4.093 20 C -0.120 4.120 21 C -0.225 4.225 22 S 0.062 5.938 23 C -0.157 4.157 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.271 0.729 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.391 0.609 31 H 0.138 0.862 32 H 0.159 0.841 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 4.284 -11.204 12.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.074 4.074 3 H 0.105 0.895 4 C 0.252 3.748 5 O -0.451 6.451 6 N -0.149 5.149 7 C -0.432 4.432 8 H 0.128 0.872 9 C -0.172 4.172 10 N -0.514 5.514 11 Si 0.750 3.250 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.193 1.193 15 C 0.015 3.985 16 C 0.332 3.668 17 O -0.384 6.384 18 O -0.348 6.348 19 C -0.105 4.105 20 C -0.151 4.151 21 C -0.360 4.360 22 S 0.325 5.675 23 C -0.293 4.293 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.099 0.901 30 H 0.248 0.752 31 H 0.155 0.845 32 H 0.177 0.823 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.378 2.117 -11.966 12.158 hybrid contribution -0.080 1.370 2.035 2.454 sum -0.458 3.488 -9.931 10.536 Atomic orbital electron populations 1.21700 0.92694 1.02905 1.01664 1.19974 0.97086 0.99060 0.91295 0.89485 1.19744 0.82824 0.87504 0.84685 1.90511 1.56010 1.14268 1.84312 1.43524 1.53214 1.06043 1.12108 1.19740 1.34279 1.00762 0.88440 0.87182 1.25149 0.97519 0.97090 0.97412 1.69800 1.31307 1.26097 1.24166 0.85937 0.80990 0.79297 0.78730 1.20299 1.21168 1.19277 1.20752 0.91967 0.85648 1.00107 1.23615 0.88772 0.79632 0.74734 1.90610 1.60724 1.40959 1.46086 1.84510 1.36446 1.34798 1.79041 1.18514 1.00771 0.94354 0.96861 1.20081 0.99764 1.01148 0.94119 1.25367 1.09190 0.96761 1.04659 1.84055 1.48610 1.13765 1.21078 1.25505 1.06005 0.99119 0.98637 0.92051 0.92280 0.92031 0.91852 0.86116 0.90098 0.75250 0.84473 0.82325 0.81507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.97 37.16 0.33 -1.91 16 2 C -0.05 -0.91 2.35 -92.92 -0.22 -1.13 16 3 H 0.09 1.40 5.78 -51.93 -0.30 1.10 16 4 C 0.46 11.02 6.65 -10.99 -0.07 10.95 16 5 O -0.57 -15.31 14.51 5.54 0.08 -15.23 16 6 N -0.43 -10.63 2.12 -116.10 -0.25 -10.88 16 7 C -0.31 -8.35 9.37 -14.93 -0.14 -8.49 16 8 H 0.11 3.21 7.36 -52.49 -0.39 2.82 16 9 C 0.03 0.81 4.81 -17.47 -0.08 0.72 16 10 N -0.87 -22.62 8.91 55.50 0.49 -22.12 16 11 Si 0.92 20.40 29.64 -169.99 -5.04 15.37 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 13 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 15 C 0.14 3.01 5.20 -5.19 -0.03 2.99 16 16 C 0.49 10.71 5.02 36.01 0.18 10.90 16 17 O -0.50 -12.79 15.97 -18.75 -0.30 -13.08 16 18 O -0.54 -9.48 13.42 -39.24 -0.53 -10.01 16 19 C -0.09 -1.60 4.58 -106.25 -0.49 -2.09 16 20 C -0.12 -1.74 9.92 -41.21 -0.41 -2.15 16 21 C -0.22 -2.95 11.23 29.04 0.33 -2.63 16 22 S 0.06 0.88 23.34 -107.50 -2.51 -1.63 16 23 C -0.16 -2.72 9.19 29.04 0.27 -2.45 16 24 H 0.06 1.11 5.96 -51.93 -0.31 0.80 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 1.10 7.83 -51.92 -0.41 0.70 16 27 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 28 H 0.12 2.66 6.52 -51.93 -0.34 2.32 16 29 H 0.08 1.39 5.62 -51.93 -0.29 1.09 16 30 H 0.39 5.35 9.10 45.56 0.41 5.76 16 31 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 32 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.17 3.07 7.46 -52.49 -0.39 2.68 16 LS Contribution 294.73 15.07 4.44 4.44 Total: -1.00 -32.71 294.73 -6.35 -39.05 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -2.41 Total: 9.40 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -0.33 Total: 4.70 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.25 Total: -33.00 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.75 Total: -38.33 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.04 Total: 15.37 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.71 -6.35 -39.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736198507.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.893 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds