Wall clock time and date at job start Tue Mar 31 2020 06:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46845 * 2 1 4 4 C 1.50696 * 109.47325 * 119.99705 * 2 1 3 5 5 O 1.21297 * 119.99686 * 88.72303 * 4 2 1 6 6 N 1.34772 * 120.00504 * 268.72031 * 4 2 1 7 7 C 1.37098 * 120.00367 * 185.08489 * 6 4 2 8 8 H 1.07998 * 120.00128 * 7.51862 * 7 6 4 9 9 C 1.38954 * 120.00061 * 187.52583 * 7 6 4 10 10 N 1.31410 * 120.00019 * 28.56832 * 9 7 6 11 11 Si 1.86800 * 119.99886 * 208.56954 * 9 7 6 12 12 H 1.48493 * 109.47390 * 94.98368 * 11 9 7 13 13 H 1.48499 * 109.47202 * 214.98389 * 11 9 7 14 14 H 1.48508 * 109.47098 * 334.98205 * 11 9 7 15 15 C 1.46498 * 119.99797 * 5.07708 * 6 4 2 16 16 C 1.50702 * 109.47084 * 92.33886 * 15 6 4 17 17 O 1.20827 * 119.99689 * 0.02562 * 16 15 6 18 18 O 1.34222 * 120.00261 * 179.97438 * 16 15 6 19 19 C 1.50704 * 109.47580 * 240.00378 * 2 1 3 20 20 C 1.38414 * 122.54231 * 119.99507 * 19 2 1 21 21 C 1.33395 * 114.92270 * 179.73333 * 20 19 2 22 22 S 1.75883 * 109.59153 * 0.26573 * 21 20 19 23 23 C 1.33392 * 122.53448 * 300.25442 * 19 2 1 24 24 H 1.08995 * 109.47106 * 302.28394 * 1 2 3 25 25 H 1.08997 * 109.47451 * 62.29416 * 1 2 3 26 26 H 1.09010 * 109.46487 * 182.28681 * 1 2 3 27 27 H 0.96996 * 119.99995 * 180.02562 * 10 9 7 28 28 H 1.08995 * 109.47555 * 212.33837 * 15 6 4 29 29 H 1.09002 * 109.47282 * 332.34361 * 15 6 4 30 30 H 0.96700 * 117.00632 * 180.02562 * 18 16 15 31 31 H 1.08000 * 122.54011 * 359.97438 * 20 19 2 32 32 H 1.07997 * 125.20482 * 180.25101 * 21 20 19 33 33 H 1.07998 * 125.20392 * 359.96928 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.2125 -1.9096 1.2073 6 7 2.2816 -0.0131 2.3566 7 6 2.8365 -0.6399 3.4423 8 1 3.1857 -1.6584 3.3577 9 6 2.9496 0.0351 4.6515 10 7 2.0911 0.9815 4.9585 11 14 4.3220 -0.4026 5.8408 12 1 5.4721 0.5123 5.6279 13 1 3.8313 -0.2646 7.2355 14 1 4.7538 -1.8038 5.6043 15 6 1.9597 1.4146 2.4205 16 6 0.5712 1.5920 2.9787 17 8 -0.0823 0.6250 3.2914 18 8 0.0607 2.8242 3.1293 19 6 2.0324 -0.7103 -1.2305 20 6 2.8306 -0.0888 -2.1752 21 6 3.1927 -0.8610 -3.2009 22 16 2.5018 -2.4664 -3.0032 23 6 1.7374 -1.9842 -1.4942 24 1 -0.3633 0.5489 0.8688 25 1 -0.3634 0.4778 -0.9098 26 1 -0.3633 -1.0270 0.0410 27 1 2.1703 1.4529 5.8025 28 1 2.6779 1.9205 3.0656 29 1 2.0061 1.8427 1.4191 30 1 -0.8336 2.8877 3.4916 31 1 3.1402 0.9420 -2.0866 32 1 3.8147 -0.5483 -4.0265 33 1 1.1267 -2.6231 -0.8737 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736198507.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:08 Heat of formation + Delta-G solvation = -95.671719 kcal Electronic energy + Delta-G solvation = -20740.469284 eV Core-core repulsion = 17472.021457 eV Total energy + Delta-G solvation = -3268.447827 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.43564 -40.27260 -38.67614 -36.92651 -36.25515 -34.30451 -33.29003 -29.69407 -29.43500 -27.22789 -25.94723 -23.74180 -22.75874 -20.91617 -19.33554 -18.94832 -18.81540 -18.53168 -17.78289 -17.24603 -16.69311 -16.25036 -16.08570 -15.62736 -15.32222 -14.66008 -14.49297 -13.91636 -13.71957 -13.66762 -13.53357 -13.35272 -13.19974 -12.95015 -12.76954 -12.50388 -12.43874 -12.22921 -12.12022 -11.98785 -11.54051 -11.39363 -10.91134 -10.32535 -9.92190 -9.58539 -9.22148 -8.48131 -5.88601 0.20314 0.83167 1.14882 1.34188 1.41729 1.53683 1.75185 1.82517 1.92051 2.28024 2.57288 2.96455 3.14843 3.79912 3.84935 4.03203 4.20229 4.39510 4.46879 4.59744 4.73534 4.77063 4.83333 4.86513 4.97648 5.16322 5.20562 5.46666 5.55196 5.68308 5.99845 6.03482 6.39526 7.11722 7.33718 7.52985 7.95915 8.58893 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.005957 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.136964 B = 4698.837722 C = 5547.581193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.041 4.041 3 H 0.116 0.884 4 C 0.453 3.547 5 O -0.615 6.615 6 N -0.442 5.442 7 C -0.344 4.344 8 H 0.075 0.925 9 C 0.005 3.995 10 N -0.883 5.883 11 Si 0.985 3.015 12 H -0.258 1.258 13 H -0.281 1.281 14 H -0.280 1.280 15 C 0.138 3.862 16 C 0.500 3.500 17 O -0.545 6.545 18 O -0.520 6.520 19 C -0.102 4.102 20 C -0.135 4.135 21 C -0.207 4.207 22 S 0.088 5.912 23 C -0.194 4.194 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.039 0.961 27 H 0.275 0.725 28 H 0.114 0.886 29 H 0.126 0.874 30 H 0.412 0.588 31 H 0.166 0.834 32 H 0.197 0.803 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.167 6.578 -12.655 14.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.065 4.065 3 H 0.133 0.867 4 C 0.243 3.757 5 O -0.500 6.500 6 N -0.161 5.161 7 C -0.471 4.471 8 H 0.093 0.907 9 C -0.197 4.197 10 N -0.522 5.522 11 Si 0.809 3.191 12 H -0.183 1.183 13 H -0.207 1.207 14 H -0.206 1.206 15 C 0.013 3.987 16 C 0.342 3.658 17 O -0.434 6.434 18 O -0.333 6.333 19 C -0.115 4.115 20 C -0.165 4.165 21 C -0.342 4.342 22 S 0.351 5.649 23 C -0.330 4.330 24 H 0.067 0.933 25 H 0.114 0.886 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.132 0.868 29 H 0.143 0.857 30 H 0.271 0.729 31 H 0.184 0.816 32 H 0.214 0.786 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.494 4.475 -13.422 14.157 hybrid contribution -0.410 0.657 2.464 2.583 sum 0.084 5.133 -10.958 12.100 Atomic orbital electron populations 1.21655 0.91878 1.01830 1.02868 1.19944 0.97614 0.99808 0.89108 0.86650 1.20774 0.81584 0.87373 0.85938 1.90472 1.57676 1.16540 1.85353 1.43671 1.53265 1.07450 1.11725 1.19550 1.36880 1.00298 0.90373 0.90684 1.25824 0.98737 0.96927 0.98238 1.69867 1.31473 1.26231 1.24592 0.85055 0.78740 0.78614 0.76681 1.18292 1.20652 1.20565 1.20919 0.91474 0.83833 1.02480 1.23620 0.88650 0.79869 0.73623 1.90604 1.61971 1.42658 1.48166 1.84435 1.37934 1.32322 1.78575 1.18668 1.01463 0.94422 0.96934 1.20272 0.99778 1.02707 0.93785 1.25862 1.07926 0.95466 1.04942 1.83926 1.47773 1.14614 1.18571 1.25457 1.07360 0.99582 1.00578 0.93290 0.88553 0.94155 0.91436 0.86844 0.85704 0.72885 0.81641 0.78595 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.16 8.97 71.98 0.65 -3.52 16 2 C -0.04 -1.47 2.35 -12.29 -0.03 -1.50 16 3 H 0.12 3.37 5.78 -2.39 -0.01 3.36 16 4 C 0.45 22.11 6.65 87.66 0.58 22.69 16 5 O -0.61 -35.04 14.51 -3.08 -0.04 -35.09 16 6 N -0.44 -22.31 2.12 -639.61 -1.36 -23.67 16 7 C -0.34 -19.49 9.37 84.04 0.79 -18.70 16 8 H 0.08 4.67 7.36 -2.91 -0.02 4.65 16 9 C 0.00 0.26 4.81 84.93 0.41 0.67 16 10 N -0.88 -45.44 8.91 21.66 0.19 -45.24 16 11 Si 0.99 42.10 29.64 68.60 2.03 44.13 16 12 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 13 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 15 C 0.14 5.74 5.20 85.63 0.45 6.19 16 16 C 0.50 21.32 5.02 71.24 0.36 21.68 16 17 O -0.55 -28.22 15.97 21.96 0.35 -27.87 16 18 O -0.52 -17.20 13.42 -51.34 -0.69 -17.89 16 19 C -0.10 -3.41 4.58 -20.92 -0.10 -3.51 16 20 C -0.14 -3.51 9.92 21.22 0.21 -3.30 16 21 C -0.21 -4.70 11.23 66.72 0.75 -3.95 16 22 S 0.09 2.36 23.34 -56.49 -1.32 1.04 16 23 C -0.19 -6.81 9.19 66.72 0.61 -6.20 16 24 H 0.05 1.75 5.96 -2.39 -0.01 1.73 16 25 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.04 1.49 7.83 -2.38 -0.02 1.47 16 27 H 0.28 13.37 8.31 -92.71 -0.77 12.60 16 28 H 0.11 4.88 6.52 -2.39 -0.02 4.86 16 29 H 0.13 3.94 5.62 -2.39 -0.01 3.93 16 30 H 0.41 10.29 9.10 -74.06 -0.67 9.61 16 31 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.14 5.56 7.46 -2.91 -0.02 5.54 16 Total: -1.00 -74.29 294.73 4.34 -69.95 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.49 Total: 24.08 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 4.68 Total: 10.56 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -1.16 Total: -68.91 kcal Atomic # 8 Polarization: -80.47 SS G_CDS: -0.38 Total: -80.85 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.32 Total: 1.04 kcal Total: -74.29 4.34 -69.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736198507.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.718 kcal (2) G-P(sol) polarization free energy of solvation -74.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds