Wall clock time and date at job start Tue Mar 31 2020 06:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47563 * 2 1 4 4 C 1.50708 * 109.46752 * 240.00275 * 2 1 3 5 5 O 1.21290 * 119.99811 * 331.11282 * 4 2 1 6 6 N 1.34774 * 119.99946 * 151.11087 * 4 2 1 7 7 C 1.37096 * 120.00033 * 184.36290 * 6 4 2 8 8 H 1.08003 * 119.99917 * 338.04045 * 7 6 4 9 9 C 1.38948 * 120.00370 * 158.04217 * 7 6 4 10 10 N 1.31414 * 119.99693 * 351.21890 * 9 7 6 11 11 Si 1.86794 * 120.00354 * 171.21790 * 9 7 6 12 12 H 1.48499 * 109.47067 * 60.00298 * 11 9 7 13 13 H 1.48500 * 109.47065 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47386 * 299.99905 * 11 9 7 15 15 C 1.46498 * 119.99983 * 4.36634 * 6 4 2 16 16 C 1.50695 * 109.47275 * 276.76313 * 15 6 4 17 17 O 1.20823 * 119.99647 * 0.02562 * 16 15 6 18 18 O 1.34229 * 120.00182 * 179.97438 * 16 15 6 19 19 C 1.50698 * 109.47362 * 120.00620 * 2 1 3 20 20 C 1.38422 * 122.54015 * 239.99503 * 19 2 1 21 21 C 1.33388 * 114.92371 * 179.97438 * 20 19 2 22 22 S 1.75886 * 109.59127 * 0.02562 * 21 20 19 23 23 C 1.33389 * 122.53960 * 59.70200 * 19 2 1 24 24 H 1.08994 * 109.47286 * 64.80225 * 1 2 3 25 25 H 1.08998 * 109.47103 * 184.80515 * 1 2 3 26 26 H 1.09005 * 109.46493 * 304.80339 * 1 2 3 27 27 H 0.97000 * 120.00311 * 179.97438 * 10 9 7 28 28 H 1.09006 * 109.47050 * 36.76739 * 15 6 4 29 29 H 1.09001 * 109.46938 * 156.76281 * 15 6 4 30 30 H 0.96700 * 116.99686 * 179.97438 * 18 16 15 31 31 H 1.08002 * 122.53536 * 359.95960 * 20 19 2 32 32 H 1.07998 * 125.20225 * 179.97438 * 21 20 19 33 33 H 1.07994 * 125.20232 * 0.03053 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 1.3673 -1.5890 -1.7375 6 7 3.2204 -0.3694 -1.7678 7 6 3.6366 -0.9520 -2.9369 8 1 3.2251 -1.9026 -3.2429 9 6 4.5878 -0.3198 -3.7281 10 7 4.9615 0.9092 -3.4506 11 14 5.3354 -1.2165 -5.1863 12 1 4.2618 -1.5869 -6.1430 13 1 6.3163 -0.3301 -5.8626 14 1 6.0221 -2.4452 -4.7128 15 6 4.0671 0.6238 -1.1024 16 6 3.6155 2.0086 -1.4887 17 8 2.6819 2.1512 -2.2422 18 8 4.2499 3.0836 -0.9950 19 6 2.0324 -0.7105 1.2303 20 6 2.8308 -0.0892 2.1751 21 6 3.1878 -0.8597 3.2038 22 16 2.4984 -2.4656 3.0049 23 6 1.7367 -1.9842 1.4944 24 1 -0.3633 0.4375 -0.9298 25 1 -0.3633 -1.0240 0.0861 26 1 -0.3632 0.5866 0.8439 27 1 5.6258 1.3505 -4.0027 28 1 3.9874 0.5038 -0.0219 29 1 5.1035 0.4810 -1.4082 30 1 3.9243 3.9510 -1.2719 31 1 3.1414 0.9414 2.0860 32 1 3.8062 -0.5458 4.0316 33 1 1.1254 -2.6228 0.8742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736198508.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:12 Heat of formation + Delta-G solvation = -81.031389 kcal Electronic energy + Delta-G solvation = -20957.577110 eV Core-core repulsion = 17689.764136 eV Total energy + Delta-G solvation = -3267.812974 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.82263 -38.66583 -37.28225 -35.28652 -34.53547 -32.45023 -31.55393 -28.53654 -27.68735 -25.57683 -24.36668 -22.34154 -21.02242 -19.34980 -18.03176 -17.47150 -17.16308 -16.90670 -16.37522 -15.64872 -15.01368 -14.48378 -14.41072 -14.08952 -13.63575 -13.17969 -12.89083 -12.67983 -12.33094 -12.16782 -11.96126 -11.79899 -11.53663 -11.29777 -11.22896 -10.99043 -10.82068 -10.48189 -10.46180 -10.35756 -10.33004 -9.63564 -9.06067 -8.74648 -8.50414 -8.02971 -7.87798 -6.42198 -3.96189 1.23908 1.87387 2.18289 2.91431 3.17431 3.22792 3.26510 3.43798 3.68249 4.06795 4.22745 4.73282 5.02741 5.12906 5.37743 5.48871 5.57588 5.62396 5.85608 5.93792 5.96679 6.15938 6.20796 6.42020 6.47853 6.58271 6.61855 6.69208 6.80602 7.47250 7.51908 8.00262 8.36440 9.01440 9.07865 9.29346 9.83111 10.65412 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.018134 B = 0.006647 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.661702 B = 4211.451984 C = 4641.261321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.049 4.049 3 H 0.081 0.919 4 C 0.477 3.523 5 O -0.573 6.573 6 N -0.431 5.431 7 C -0.299 4.299 8 H 0.105 0.895 9 C 0.028 3.972 10 N -0.895 5.895 11 Si 0.936 3.064 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.147 3.853 16 C 0.491 3.509 17 O -0.509 6.509 18 O -0.534 6.534 19 C -0.091 4.091 20 C -0.126 4.126 21 C -0.215 4.215 22 S 0.075 5.925 23 C -0.188 4.188 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.272 0.728 28 H 0.074 0.926 29 H 0.134 0.866 30 H 0.391 0.609 31 H 0.141 0.859 32 H 0.162 0.838 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 1.105 12.217 12.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.073 4.073 3 H 0.100 0.900 4 C 0.265 3.735 5 O -0.455 6.455 6 N -0.150 5.150 7 C -0.426 4.426 8 H 0.123 0.877 9 C -0.173 4.173 10 N -0.536 5.536 11 Si 0.763 3.237 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.198 1.198 15 C 0.020 3.980 16 C 0.332 3.668 17 O -0.395 6.395 18 O -0.345 6.345 19 C -0.103 4.103 20 C -0.156 4.156 21 C -0.350 4.350 22 S 0.338 5.662 23 C -0.323 4.323 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.152 0.848 30 H 0.247 0.753 31 H 0.158 0.842 32 H 0.180 0.820 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.695 -0.933 12.621 12.674 hybrid contribution 0.374 1.873 -1.895 2.691 sum -0.321 0.940 10.726 10.771 Atomic orbital electron populations 1.21548 0.92418 1.02470 1.01457 1.20008 0.97624 0.98792 0.90874 0.90048 1.19870 0.81100 0.86264 0.86261 1.90505 1.56449 1.33786 1.64801 1.43323 1.14746 1.34730 1.22167 1.19691 1.21291 1.04251 0.97371 0.87746 1.25285 0.98040 0.95170 0.98795 1.69612 1.32439 1.11026 1.40533 0.85831 0.78623 0.78711 0.80555 1.19839 1.20942 1.19845 1.20768 0.99702 0.82477 0.95028 1.23885 0.79055 0.86887 0.76982 1.90606 1.29548 1.86350 1.32957 1.84535 1.62102 1.17689 1.70167 1.18736 1.00251 0.94213 0.97076 1.20144 0.99973 1.01429 0.94082 1.25464 1.08505 0.96708 1.04350 1.84070 1.48191 1.13487 1.20466 1.25503 1.07079 0.99447 1.00282 0.92020 0.91783 0.92821 0.91781 0.90854 0.84795 0.75275 0.84151 0.81997 0.81488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 8.59 37.16 0.32 -1.80 16 2 C -0.05 -0.94 2.16 -92.92 -0.20 -1.14 16 3 H 0.08 1.54 5.80 -51.93 -0.30 1.24 16 4 C 0.48 11.63 6.15 -10.98 -0.07 11.56 16 5 O -0.57 -15.59 15.93 5.55 0.09 -15.50 16 6 N -0.43 -10.94 2.19 -116.09 -0.25 -11.20 16 7 C -0.30 -8.24 9.34 -14.93 -0.14 -8.38 16 8 H 0.10 2.99 7.36 -52.48 -0.39 2.61 16 9 C 0.03 0.74 5.14 -17.47 -0.09 0.65 16 10 N -0.89 -23.42 8.86 55.50 0.49 -22.92 16 11 Si 0.94 20.85 29.56 -169.99 -5.03 15.82 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 15 C 0.15 3.25 4.83 -5.20 -0.03 3.23 16 16 C 0.49 10.86 5.19 36.00 0.19 11.05 16 17 O -0.51 -13.11 16.72 -18.75 -0.31 -13.42 16 18 O -0.53 -9.50 13.42 -39.26 -0.53 -10.03 16 19 C -0.09 -1.52 4.22 -106.25 -0.45 -1.97 16 20 C -0.13 -1.79 8.76 -41.21 -0.36 -2.15 16 21 C -0.22 -2.69 11.23 29.04 0.33 -2.37 16 22 S 0.07 0.98 23.34 -107.50 -2.51 -1.53 16 23 C -0.19 -3.05 10.06 29.04 0.29 -2.76 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.06 1.11 7.43 -51.93 -0.39 0.73 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.07 1.39 5.46 -51.93 -0.28 1.10 16 29 H 0.13 3.12 6.30 -51.93 -0.33 2.80 16 30 H 0.39 5.30 9.10 45.56 0.41 5.71 16 31 H 0.14 1.77 7.98 -52.49 -0.42 1.35 16 32 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 33 H 0.17 2.82 7.88 -52.49 -0.41 2.41 16 LS Contribution 296.96 15.07 4.48 4.48 Total: -1.00 -32.55 296.96 -6.29 -38.84 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -2.50 Total: 9.54 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -0.21 Total: 5.93 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.24 Total: -34.12 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.75 Total: -38.95 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.55 -6.29 -38.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736198508.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.195 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds