Wall clock time and date at job start Tue Mar 31 2020 06:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47563 * 2 1 4 4 C 1.50708 * 109.46752 * 240.00275 * 2 1 3 5 5 O 1.21290 * 119.99811 * 331.11282 * 4 2 1 6 6 N 1.34774 * 119.99946 * 151.11087 * 4 2 1 7 7 C 1.37096 * 120.00033 * 184.36290 * 6 4 2 8 8 H 1.08003 * 119.99917 * 338.04045 * 7 6 4 9 9 C 1.38948 * 120.00370 * 158.04217 * 7 6 4 10 10 N 1.31414 * 119.99693 * 351.21890 * 9 7 6 11 11 Si 1.86794 * 120.00354 * 171.21790 * 9 7 6 12 12 H 1.48499 * 109.47067 * 60.00298 * 11 9 7 13 13 H 1.48500 * 109.47065 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47386 * 299.99905 * 11 9 7 15 15 C 1.46498 * 119.99983 * 4.36634 * 6 4 2 16 16 C 1.50695 * 109.47275 * 276.76313 * 15 6 4 17 17 O 1.20823 * 119.99647 * 0.02562 * 16 15 6 18 18 O 1.34229 * 120.00182 * 179.97438 * 16 15 6 19 19 C 1.50698 * 109.47362 * 120.00620 * 2 1 3 20 20 C 1.38422 * 122.54015 * 239.99503 * 19 2 1 21 21 C 1.33388 * 114.92371 * 179.97438 * 20 19 2 22 22 S 1.75886 * 109.59127 * 0.02562 * 21 20 19 23 23 C 1.33389 * 122.53960 * 59.70200 * 19 2 1 24 24 H 1.08994 * 109.47286 * 64.80225 * 1 2 3 25 25 H 1.08998 * 109.47103 * 184.80515 * 1 2 3 26 26 H 1.09005 * 109.46493 * 304.80339 * 1 2 3 27 27 H 0.97000 * 120.00311 * 179.97438 * 10 9 7 28 28 H 1.09006 * 109.47050 * 36.76739 * 15 6 4 29 29 H 1.09001 * 109.46938 * 156.76281 * 15 6 4 30 30 H 0.96700 * 116.99686 * 179.97438 * 18 16 15 31 31 H 1.08002 * 122.53536 * 359.95960 * 20 19 2 32 32 H 1.07998 * 125.20225 * 179.97438 * 21 20 19 33 33 H 1.07994 * 125.20232 * 0.03053 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 1.3673 -1.5890 -1.7375 6 7 3.2204 -0.3694 -1.7678 7 6 3.6366 -0.9520 -2.9369 8 1 3.2251 -1.9026 -3.2429 9 6 4.5878 -0.3198 -3.7281 10 7 4.9615 0.9092 -3.4506 11 14 5.3354 -1.2165 -5.1863 12 1 4.2618 -1.5869 -6.1430 13 1 6.3163 -0.3301 -5.8626 14 1 6.0221 -2.4452 -4.7128 15 6 4.0671 0.6238 -1.1024 16 6 3.6155 2.0086 -1.4887 17 8 2.6819 2.1512 -2.2422 18 8 4.2499 3.0836 -0.9950 19 6 2.0324 -0.7105 1.2303 20 6 2.8308 -0.0892 2.1751 21 6 3.1878 -0.8597 3.2038 22 16 2.4984 -2.4656 3.0049 23 6 1.7367 -1.9842 1.4944 24 1 -0.3633 0.4375 -0.9298 25 1 -0.3633 -1.0240 0.0861 26 1 -0.3632 0.5866 0.8439 27 1 5.6258 1.3505 -4.0027 28 1 3.9874 0.5038 -0.0219 29 1 5.1035 0.4810 -1.4082 30 1 3.9243 3.9510 -1.2719 31 1 3.1414 0.9414 2.0860 32 1 3.8062 -0.5458 4.0316 33 1 1.1254 -2.6228 0.8742 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736198508.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:11 Heat of formation + Delta-G solvation = -102.521609 kcal Electronic energy + Delta-G solvation = -20958.508996 eV Core-core repulsion = 17689.764136 eV Total energy + Delta-G solvation = -3268.744860 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.53367 -40.29525 -38.73825 -37.05240 -36.37034 -34.03980 -33.38729 -29.78976 -29.45496 -27.35183 -25.84916 -23.82084 -22.69451 -20.87735 -19.41715 -19.07215 -18.69275 -18.59831 -18.12089 -17.36049 -16.66170 -16.23928 -15.95760 -15.86012 -15.04474 -14.76972 -14.50646 -13.95613 -13.73707 -13.68806 -13.55273 -13.24447 -13.23279 -12.93581 -12.74121 -12.56622 -12.45862 -12.23511 -12.18337 -12.11156 -11.59897 -11.51246 -10.97890 -10.51783 -9.84658 -9.65281 -9.23176 -8.40960 -6.02779 0.11594 0.77517 1.09394 1.37422 1.39832 1.50292 1.67567 1.73491 1.93173 2.25437 2.52736 2.96832 3.09388 3.80197 3.94066 4.07068 4.23363 4.28413 4.40045 4.56468 4.74198 4.79321 4.84479 4.90379 4.96057 5.16394 5.19513 5.40750 5.46834 5.58265 5.94815 6.02744 6.38777 7.08663 7.28839 7.45054 7.90856 8.63625 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.018134 B = 0.006647 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.661702 B = 4211.451984 C = 4641.261321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.039 4.039 3 H 0.085 0.915 4 C 0.466 3.534 5 O -0.616 6.616 6 N -0.444 5.444 7 C -0.337 4.337 8 H 0.078 0.922 9 C -0.002 4.002 10 N -0.901 5.901 11 Si 0.995 3.005 12 H -0.283 1.283 13 H -0.270 1.270 14 H -0.263 1.263 15 C 0.147 3.853 16 C 0.500 3.500 17 O -0.551 6.551 18 O -0.516 6.516 19 C -0.100 4.100 20 C -0.145 4.145 21 C -0.196 4.196 22 S 0.118 5.882 23 C -0.218 4.218 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.089 0.911 27 H 0.275 0.725 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.414 0.586 31 H 0.159 0.841 32 H 0.200 0.800 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.052 2.043 14.264 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.063 4.063 3 H 0.103 0.897 4 C 0.256 3.744 5 O -0.502 6.502 6 N -0.163 5.163 7 C -0.464 4.464 8 H 0.096 0.904 9 C -0.202 4.202 10 N -0.542 5.542 11 Si 0.819 3.181 12 H -0.209 1.209 13 H -0.195 1.195 14 H -0.188 1.188 15 C 0.021 3.979 16 C 0.343 3.657 17 O -0.441 6.441 18 O -0.328 6.328 19 C -0.113 4.113 20 C -0.174 4.174 21 C -0.331 4.331 22 S 0.381 5.619 23 C -0.354 4.354 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.140 0.860 30 H 0.273 0.727 31 H 0.177 0.823 32 H 0.217 0.783 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.838 0.051 14.710 14.733 hybrid contribution -0.074 1.601 -2.452 2.930 sum 0.763 1.652 12.257 12.392 Atomic orbital electron populations 1.21546 0.91549 1.02594 1.01866 1.19887 0.98389 0.98346 0.89715 0.89657 1.20792 0.80517 0.85680 0.87408 1.90457 1.57611 1.35691 1.66433 1.43486 1.15591 1.35376 1.21824 1.19636 1.23023 1.04392 0.99387 0.90418 1.25998 0.97643 0.95871 1.00712 1.69697 1.32104 1.11393 1.40958 0.84967 0.77667 0.78229 0.77277 1.20916 1.19484 1.18750 1.20831 0.98345 0.82141 0.96564 1.23732 0.78269 0.87685 0.76021 1.90599 1.31451 1.87072 1.34949 1.84451 1.60965 1.18189 1.69236 1.18687 1.01467 0.94458 0.96710 1.20226 1.00451 1.02607 0.94153 1.25944 1.07076 0.95710 1.04368 1.83934 1.46807 1.13631 1.17521 1.25526 1.08012 0.99580 1.02257 0.94035 0.92407 0.89265 0.91501 0.87545 0.85953 0.72653 0.82350 0.78274 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.16 8.59 71.98 0.62 -3.54 16 2 C -0.04 -1.52 2.16 -12.28 -0.03 -1.55 16 3 H 0.09 3.18 5.80 -2.39 -0.01 3.17 16 4 C 0.47 23.53 6.15 87.66 0.54 24.07 16 5 O -0.62 -35.46 15.93 -3.06 -0.05 -35.51 16 6 N -0.44 -23.15 2.19 -639.60 -1.40 -24.55 16 7 C -0.34 -19.25 9.34 84.04 0.78 -18.46 16 8 H 0.08 4.73 7.36 -2.91 -0.02 4.71 16 9 C 0.00 -0.10 5.14 84.93 0.44 0.33 16 10 N -0.90 -46.90 8.86 21.66 0.19 -46.71 16 11 Si 0.99 42.94 29.56 68.60 2.03 44.97 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 14 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 15 C 0.15 6.44 4.83 85.63 0.41 6.86 16 16 C 0.50 21.65 5.19 71.23 0.37 22.02 16 17 O -0.55 -28.46 16.72 21.97 0.37 -28.09 16 18 O -0.52 -17.08 13.42 -51.41 -0.69 -17.77 16 19 C -0.10 -3.26 4.22 -20.92 -0.09 -3.35 16 20 C -0.14 -3.69 8.76 21.22 0.19 -3.50 16 21 C -0.20 -4.11 11.23 66.72 0.75 -3.36 16 22 S 0.12 2.80 23.34 -56.49 -1.32 1.48 16 23 C -0.22 -7.02 10.06 66.72 0.67 -6.35 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 2.08 7.43 -2.39 -0.02 2.06 16 26 H 0.09 2.46 8.14 -2.38 -0.02 2.45 16 27 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 28 H 0.11 3.87 5.46 -2.38 -0.01 3.86 16 29 H 0.12 5.66 6.30 -2.39 -0.02 5.64 16 30 H 0.41 10.04 9.10 -74.06 -0.67 9.36 16 31 H 0.16 3.40 7.98 -2.91 -0.02 3.38 16 32 H 0.20 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.15 5.24 7.88 -2.91 -0.02 5.22 16 Total: -1.00 -72.76 296.96 4.27 -68.49 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.49 Total: 24.53 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 4.65 Total: 13.16 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.21 Total: -71.25 kcal Atomic # 8 Polarization: -81.00 SS G_CDS: -0.37 Total: -81.37 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.32 Total: 1.48 kcal Total: -72.76 4.27 -68.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736198508.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.035 kcal (2) G-P(sol) polarization free energy of solvation -72.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds