Wall clock time and date at job start Tue Mar 31 2020 06:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46606 * 2 1 4 4 C 1.50696 * 109.47054 * 119.99871 * 2 1 3 5 5 O 1.21294 * 120.00223 * 30.84145 * 4 2 1 6 6 N 1.34778 * 120.00016 * 211.11873 * 4 2 1 7 7 C 1.37099 * 119.99815 * 184.09051 * 6 4 2 8 8 H 1.08001 * 120.00275 * 10.55696 * 7 6 4 9 9 C 1.38947 * 119.99631 * 190.56300 * 7 6 4 10 10 N 1.31414 * 120.00089 * 25.06755 * 9 7 6 11 11 Si 1.86801 * 119.99932 * 205.06491 * 9 7 6 12 12 H 1.48500 * 109.47301 * 60.00025 * 11 9 7 13 13 H 1.48499 * 109.47042 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47037 * 299.99856 * 11 9 7 15 15 C 1.46500 * 119.99973 * 4.08334 * 6 4 2 16 16 C 1.50700 * 109.46912 * 83.95347 * 15 6 4 17 17 O 1.20827 * 120.00032 * 359.97438 * 16 15 6 18 18 O 1.34223 * 119.99882 * 180.02562 * 16 15 6 19 19 C 1.50699 * 109.47042 * 239.99863 * 2 1 3 20 20 C 1.33389 * 125.20058 * 119.99867 * 19 2 1 21 21 C 1.38427 * 114.92151 * 179.97438 * 20 19 2 22 22 C 1.33384 * 114.91859 * 0.02562 * 21 20 19 23 23 S 1.75878 * 125.20578 * 299.69320 * 19 2 1 24 24 H 1.09002 * 109.47712 * 301.48611 * 1 2 3 25 25 H 1.09006 * 109.47371 * 61.48953 * 1 2 3 26 26 H 1.09005 * 109.47159 * 181.48732 * 1 2 3 27 27 H 0.97003 * 119.99711 * 180.02562 * 10 9 7 28 28 H 1.09001 * 109.46795 * 203.95550 * 15 6 4 29 29 H 1.08996 * 109.46876 * 323.95383 * 15 6 4 30 30 H 0.96701 * 116.99828 * 180.02562 * 18 16 15 31 31 H 1.08006 * 122.53977 * 0.02562 * 20 19 2 32 32 H 1.08000 * 122.54080 * 180.02562 * 21 20 19 33 33 H 1.08005 * 125.20416 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.3842 -1.6129 1.7168 6 7 3.1990 -0.3391 1.7938 7 6 3.6976 -1.0387 2.8623 8 1 3.2526 -1.9811 3.1457 9 6 4.7753 -0.5353 3.5804 10 7 5.0096 0.7577 3.5938 11 14 5.8911 -1.6965 4.5271 12 1 6.5081 -2.6664 3.5869 13 1 6.9574 -0.9159 5.2044 14 1 5.0942 -2.4303 5.5430 15 6 3.9345 0.8120 1.2644 16 6 3.3822 2.0797 1.8635 17 8 2.4677 2.0271 2.6515 18 8 3.9055 3.2673 1.5211 19 6 2.0323 -0.7104 -1.2304 20 6 2.8024 -0.1646 -2.1729 21 6 3.1404 -1.0127 -3.2134 22 6 2.6444 -2.2471 -3.1161 23 16 1.6991 -2.3882 -1.6396 24 1 -0.3634 0.5367 0.8763 25 1 -0.3634 0.4905 -0.9031 26 1 -0.3634 -1.0274 0.0267 27 1 5.7622 1.1090 4.0948 28 1 4.9897 0.7183 1.5213 29 1 3.8260 0.8451 0.1804 30 1 3.5183 4.0525 1.9318 31 1 3.1375 0.8611 -2.1273 32 1 3.7589 -0.6988 -4.0413 33 1 2.8026 -3.0399 -3.8323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736202201.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:54 Heat of formation + Delta-G solvation = -79.242596 kcal Electronic energy + Delta-G solvation = -20805.883812 eV Core-core repulsion = 17538.148406 eV Total energy + Delta-G solvation = -3267.735407 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.69481 -38.51537 -37.33508 -35.37281 -34.64290 -33.20498 -31.65604 -28.27053 -27.77202 -25.51575 -23.98383 -22.47675 -21.14804 -19.21397 -18.93959 -17.25728 -17.08491 -16.72692 -16.15669 -15.63892 -15.26403 -14.69853 -14.52394 -14.13542 -13.64972 -13.25804 -12.90271 -12.59253 -12.38627 -12.12152 -11.92047 -11.83784 -11.66795 -11.41969 -11.23811 -11.03468 -10.83594 -10.53158 -10.46889 -10.32260 -10.23423 -9.73929 -9.05275 -8.83242 -8.18281 -8.14600 -7.99725 -6.51045 -3.88922 1.26113 1.93204 2.35328 2.96471 3.13658 3.22000 3.26407 3.33526 3.57317 4.00367 4.17686 4.65982 4.93364 5.16619 5.25169 5.39950 5.48426 5.65932 5.74842 5.80134 5.91831 6.10143 6.26632 6.32706 6.39197 6.51382 6.58139 6.60183 6.72042 7.39932 7.50449 7.90817 8.31993 8.92293 9.03787 9.25964 9.79033 10.57106 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.007157 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.813459 B = 3911.541583 C = 4486.949783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.040 4.040 3 H 0.089 0.911 4 C 0.464 3.536 5 O -0.568 6.568 6 N -0.425 5.425 7 C -0.304 4.304 8 H 0.110 0.890 9 C 0.029 3.971 10 N -0.879 5.879 11 Si 0.927 3.073 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.272 1.272 15 C 0.138 3.862 16 C 0.486 3.514 17 O -0.505 6.505 18 O -0.532 6.532 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.131 4.131 22 C -0.236 4.236 23 S 0.133 5.867 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.272 0.728 28 H 0.137 0.863 29 H 0.078 0.922 30 H 0.393 0.607 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.737 1.780 -12.071 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.063 4.063 3 H 0.107 0.893 4 C 0.252 3.748 5 O -0.450 6.450 6 N -0.143 5.143 7 C -0.431 4.431 8 H 0.128 0.872 9 C -0.174 4.174 10 N -0.519 5.519 11 Si 0.753 3.247 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.012 3.988 16 C 0.327 3.673 17 O -0.391 6.391 18 O -0.343 6.343 19 C -0.268 4.268 20 C -0.181 4.181 21 C -0.162 4.162 22 C -0.371 4.371 23 S 0.397 5.603 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.154 0.846 29 H 0.096 0.904 30 H 0.249 0.751 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.818 -0.123 -10.998 11.147 hybrid contribution 1.368 1.518 0.258 2.060 sum -0.450 1.395 -10.740 10.839 Atomic orbital electron populations 1.21626 0.92132 1.03175 1.01569 1.19855 0.97757 0.98652 0.90080 0.89332 1.19682 0.81314 0.87220 0.86593 1.90527 1.55755 1.33336 1.65423 1.43458 1.17921 1.24214 1.28735 1.19733 1.12146 1.03368 1.07829 0.87202 1.25204 0.98945 0.95875 0.97333 1.69898 1.29428 1.10962 1.41625 0.85974 0.79421 0.79952 0.79333 1.19743 1.20959 1.19753 1.20890 1.00988 0.81609 0.95338 1.23984 0.79553 0.84463 0.79340 1.90628 1.29532 1.86750 1.32159 1.84531 1.63803 1.17323 1.68642 1.24310 1.04690 0.97528 1.00241 1.20099 1.01512 1.01603 0.94935 1.20038 1.02755 0.93204 1.00238 1.25684 1.07154 1.01498 1.02809 1.84571 1.50281 1.09564 1.15834 0.91733 0.92455 0.91383 0.91742 0.84565 0.90405 0.75076 0.84428 0.84726 0.82366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.75 37.16 0.32 -1.89 16 2 C -0.04 -0.76 2.30 -92.93 -0.21 -0.98 16 3 H 0.09 1.61 5.86 -51.93 -0.30 1.31 16 4 C 0.46 11.29 6.34 -10.99 -0.07 11.22 16 5 O -0.57 -15.54 15.78 5.54 0.09 -15.45 16 6 N -0.42 -10.74 2.18 -116.10 -0.25 -11.00 16 7 C -0.30 -8.36 9.39 -14.93 -0.14 -8.50 16 8 H 0.11 3.18 7.35 -52.49 -0.39 2.79 16 9 C 0.03 0.75 4.86 -17.47 -0.08 0.67 16 10 N -0.88 -22.83 9.53 55.50 0.53 -22.31 16 11 Si 0.93 20.43 29.62 -169.99 -5.04 15.39 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 C 0.14 3.03 4.83 -5.19 -0.03 3.01 16 16 C 0.49 10.70 5.99 36.01 0.22 10.92 16 17 O -0.51 -13.04 17.03 -18.75 -0.32 -13.36 16 18 O -0.53 -9.36 13.42 -39.24 -0.53 -9.89 16 19 C -0.15 -2.55 4.89 -36.00 -0.18 -2.73 16 20 C -0.15 -2.21 9.47 -41.21 -0.39 -2.60 16 21 C -0.13 -1.71 10.18 -41.21 -0.42 -2.13 16 22 C -0.24 -3.11 11.23 29.04 0.33 -2.79 16 23 S 0.13 2.16 23.07 -107.50 -2.48 -0.32 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.23 7.72 -51.93 -0.40 0.83 16 27 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.14 3.13 6.02 -51.93 -0.31 2.81 16 29 H 0.08 1.44 5.97 -51.93 -0.31 1.13 16 30 H 0.39 5.23 9.10 45.56 0.41 5.64 16 31 H 0.14 1.75 8.06 -52.48 -0.42 1.33 16 32 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.16 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 301.00 15.07 4.54 4.54 Total: -1.00 -32.89 301.00 -6.66 -39.55 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -2.55 Total: 8.64 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -0.65 Total: 4.20 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.28 Total: -33.30 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.76 Total: -38.70 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.04 Total: 15.39 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.48 Total: -0.32 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.89 -6.66 -39.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736202201.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.693 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds