Wall clock time and date at job start Tue Mar 31 2020 06:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46606 * 2 1 4 4 C 1.50696 * 109.47054 * 119.99871 * 2 1 3 5 5 O 1.21294 * 120.00223 * 30.84145 * 4 2 1 6 6 N 1.34778 * 120.00016 * 211.11873 * 4 2 1 7 7 C 1.37099 * 119.99815 * 184.09051 * 6 4 2 8 8 H 1.08001 * 120.00275 * 10.55696 * 7 6 4 9 9 C 1.38947 * 119.99631 * 190.56300 * 7 6 4 10 10 N 1.31414 * 120.00089 * 25.06755 * 9 7 6 11 11 Si 1.86801 * 119.99932 * 205.06491 * 9 7 6 12 12 H 1.48500 * 109.47301 * 60.00025 * 11 9 7 13 13 H 1.48499 * 109.47042 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47037 * 299.99856 * 11 9 7 15 15 C 1.46500 * 119.99973 * 4.08334 * 6 4 2 16 16 C 1.50700 * 109.46912 * 83.95347 * 15 6 4 17 17 O 1.20827 * 120.00032 * 359.97438 * 16 15 6 18 18 O 1.34223 * 119.99882 * 180.02562 * 16 15 6 19 19 C 1.50699 * 109.47042 * 239.99863 * 2 1 3 20 20 C 1.33389 * 125.20058 * 119.99867 * 19 2 1 21 21 C 1.38427 * 114.92151 * 179.97438 * 20 19 2 22 22 C 1.33384 * 114.91859 * 0.02562 * 21 20 19 23 23 S 1.75878 * 125.20578 * 299.69320 * 19 2 1 24 24 H 1.09002 * 109.47712 * 301.48611 * 1 2 3 25 25 H 1.09006 * 109.47371 * 61.48953 * 1 2 3 26 26 H 1.09005 * 109.47159 * 181.48732 * 1 2 3 27 27 H 0.97003 * 119.99711 * 180.02562 * 10 9 7 28 28 H 1.09001 * 109.46795 * 203.95550 * 15 6 4 29 29 H 1.08996 * 109.46876 * 323.95383 * 15 6 4 30 30 H 0.96701 * 116.99828 * 180.02562 * 18 16 15 31 31 H 1.08006 * 122.53977 * 0.02562 * 20 19 2 32 32 H 1.08000 * 122.54080 * 180.02562 * 21 20 19 33 33 H 1.08005 * 125.20416 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.3842 -1.6129 1.7168 6 7 3.1990 -0.3391 1.7938 7 6 3.6976 -1.0387 2.8623 8 1 3.2526 -1.9811 3.1457 9 6 4.7753 -0.5353 3.5804 10 7 5.0096 0.7577 3.5938 11 14 5.8911 -1.6965 4.5271 12 1 6.5081 -2.6664 3.5869 13 1 6.9574 -0.9159 5.2044 14 1 5.0942 -2.4303 5.5430 15 6 3.9345 0.8120 1.2644 16 6 3.3822 2.0797 1.8635 17 8 2.4677 2.0271 2.6515 18 8 3.9055 3.2673 1.5211 19 6 2.0323 -0.7104 -1.2304 20 6 2.8024 -0.1646 -2.1729 21 6 3.1404 -1.0127 -3.2134 22 6 2.6444 -2.2471 -3.1161 23 16 1.6991 -2.3882 -1.6396 24 1 -0.3634 0.5367 0.8763 25 1 -0.3634 0.4905 -0.9031 26 1 -0.3634 -1.0274 0.0267 27 1 5.7622 1.1090 4.0948 28 1 4.9897 0.7183 1.5213 29 1 3.8260 0.8451 0.1804 30 1 3.5183 4.0525 1.9318 31 1 3.1375 0.8611 -2.1273 32 1 3.7589 -0.6988 -4.0413 33 1 2.8026 -3.0399 -3.8323 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736202201.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:54 Heat of formation + Delta-G solvation = -100.996487 kcal Electronic energy + Delta-G solvation = -20806.827132 eV Core-core repulsion = 17538.148406 eV Total energy + Delta-G solvation = -3268.678726 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43892 -40.19921 -38.58522 -37.11498 -36.45793 -34.72621 -33.57597 -29.58411 -29.45793 -27.33809 -25.34878 -23.92670 -22.82692 -20.72643 -20.22444 -19.08900 -18.79912 -18.36653 -17.66879 -17.36314 -16.48560 -16.43834 -16.27205 -15.93036 -15.17206 -14.78729 -14.51966 -13.91602 -13.71399 -13.67747 -13.51326 -13.39754 -13.18016 -12.91732 -12.70950 -12.61228 -12.42749 -12.25051 -12.20100 -12.13310 -11.61032 -11.45550 -10.95801 -10.55751 -9.94219 -9.49747 -9.35467 -8.47908 -5.93791 0.12107 0.76255 1.24132 1.34897 1.41336 1.51847 1.60031 1.79447 1.93768 2.23656 2.47612 2.88683 3.07836 3.76713 3.77581 4.01304 4.17209 4.29962 4.32876 4.68483 4.73111 4.74633 4.80308 4.83594 4.91347 5.14388 5.25946 5.42749 5.43876 5.65942 5.88312 5.95746 6.35659 7.07191 7.25577 7.39418 7.89623 8.58223 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.007157 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.813459 B = 3911.541583 C = 4486.949783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.028 4.028 3 H 0.099 0.901 4 C 0.455 3.545 5 O -0.614 6.614 6 N -0.438 5.438 7 C -0.344 4.344 8 H 0.078 0.922 9 C 0.002 3.998 10 N -0.889 5.889 11 Si 0.988 3.012 12 H -0.264 1.264 13 H -0.269 1.269 14 H -0.282 1.282 15 C 0.138 3.862 16 C 0.494 3.506 17 O -0.550 6.550 18 O -0.514 6.514 19 C -0.182 4.182 20 C -0.132 4.132 21 C -0.134 4.134 22 C -0.213 4.213 23 S 0.070 5.930 24 H 0.048 0.952 25 H 0.093 0.907 26 H 0.052 0.948 27 H 0.277 0.723 28 H 0.127 0.873 29 H 0.114 0.886 30 H 0.416 0.584 31 H 0.162 0.838 32 H 0.173 0.827 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 2.971 -14.378 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.051 4.051 3 H 0.117 0.883 4 C 0.245 3.755 5 O -0.500 6.500 6 N -0.156 5.156 7 C -0.471 4.471 8 H 0.096 0.904 9 C -0.200 4.200 10 N -0.528 5.528 11 Si 0.811 3.189 12 H -0.188 1.188 13 H -0.194 1.194 14 H -0.208 1.208 15 C 0.012 3.988 16 C 0.337 3.663 17 O -0.440 6.440 18 O -0.326 6.326 19 C -0.300 4.300 20 C -0.163 4.163 21 C -0.164 4.164 22 C -0.349 4.349 23 S 0.333 5.667 24 H 0.067 0.933 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.132 0.868 30 H 0.275 0.725 31 H 0.179 0.821 32 H 0.191 0.809 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.012 1.128 -13.332 13.380 hybrid contribution 0.844 1.220 0.899 1.735 sum 0.833 2.348 -12.433 12.680 Atomic orbital electron populations 1.21615 0.91440 1.02462 1.02580 1.19686 0.98386 0.98458 0.88610 0.88340 1.20638 0.80639 0.86600 0.87668 1.90478 1.57067 1.35336 1.67089 1.43603 1.18600 1.25105 1.28322 1.19606 1.14042 1.03458 1.09991 0.90361 1.25900 0.99083 0.97294 0.97676 1.69957 1.29455 1.11720 1.41619 0.85088 0.77613 0.78230 0.77956 1.18850 1.19387 1.20759 1.20977 0.99860 0.80746 0.97208 1.23890 0.78625 0.85520 0.78278 1.90623 1.31576 1.87573 1.34193 1.84450 1.62951 1.17034 1.68153 1.24085 1.07591 0.97638 1.00666 1.20511 0.98985 1.02767 0.94039 1.20424 1.02720 0.92562 1.00668 1.26044 1.05130 1.02612 1.01078 1.84824 1.52405 1.10600 1.18851 0.93263 0.88842 0.92876 0.91268 0.85530 0.86831 0.72466 0.82069 0.80935 0.79296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 8.75 71.98 0.63 -3.70 16 2 C -0.03 -1.08 2.30 -12.29 -0.03 -1.10 16 3 H 0.10 3.46 5.86 -2.38 -0.01 3.45 16 4 C 0.45 22.87 6.34 87.66 0.56 23.43 16 5 O -0.61 -35.61 15.78 -3.07 -0.05 -35.66 16 6 N -0.44 -22.68 2.18 -639.61 -1.40 -24.07 16 7 C -0.34 -19.63 9.39 84.04 0.79 -18.84 16 8 H 0.08 4.84 7.35 -2.91 -0.02 4.82 16 9 C 0.00 0.12 4.86 84.93 0.41 0.53 16 10 N -0.89 -45.84 9.53 21.66 0.21 -45.63 16 11 Si 0.99 42.08 29.62 68.60 2.03 44.11 16 12 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 13 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 14 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 15 C 0.14 5.94 4.83 85.63 0.41 6.35 16 16 C 0.49 21.26 5.99 71.24 0.43 21.69 16 17 O -0.55 -28.55 17.03 21.96 0.37 -28.17 16 18 O -0.51 -16.76 13.42 -51.35 -0.69 -17.45 16 19 C -0.18 -5.98 4.89 24.59 0.12 -5.86 16 20 C -0.13 -3.41 9.47 21.22 0.20 -3.21 16 21 C -0.13 -2.89 10.18 21.22 0.22 -2.68 16 22 C -0.21 -4.96 11.23 66.72 0.75 -4.21 16 23 S 0.07 2.24 23.07 -56.49 -1.30 0.93 16 24 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 26 H 0.05 2.00 7.72 -2.38 -0.02 1.98 16 27 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 28 H 0.13 5.71 6.02 -2.39 -0.01 5.70 16 29 H 0.11 3.96 5.97 -2.39 -0.01 3.95 16 30 H 0.42 9.89 9.10 -74.06 -0.67 9.21 16 31 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 32 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 33 H 0.19 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -74.51 301.00 4.15 -70.37 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.48 Total: 23.16 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 4.49 Total: 12.41 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -1.19 Total: -69.70 kcal Atomic # 8 Polarization: -80.92 SS G_CDS: -0.36 Total: -81.28 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.30 Total: 0.93 kcal Total: -74.51 4.15 -70.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736202201.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.630 kcal (2) G-P(sol) polarization free energy of solvation -74.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds