Wall clock time and date at job start Tue Mar 31 2020 06:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46824 * 2 1 4 4 C 1.50694 * 109.47209 * 239.99881 * 2 1 3 5 5 O 1.21293 * 119.99643 * 277.65818 * 4 2 1 6 6 N 1.34768 * 120.00387 * 97.66209 * 4 2 1 7 7 C 1.37099 * 120.00104 * 4.39683 * 6 4 2 8 8 H 1.07999 * 119.99710 * 342.44516 * 7 6 4 9 9 C 1.38947 * 120.00057 * 162.44050 * 7 6 4 10 10 N 1.31414 * 120.00160 * 345.00064 * 9 7 6 11 11 Si 1.86804 * 119.99958 * 164.99542 * 9 7 6 12 12 H 1.48500 * 109.46827 * 60.00626 * 11 9 7 13 13 H 1.48500 * 109.47276 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47366 * 300.00233 * 11 9 7 15 15 C 1.46504 * 120.00355 * 184.40297 * 6 4 2 16 16 C 1.50705 * 109.46656 * 275.29790 * 15 6 4 17 17 O 1.20826 * 120.00432 * 359.97438 * 16 15 6 18 18 O 1.34237 * 119.99627 * 179.97438 * 16 15 6 19 19 C 1.50703 * 109.47104 * 119.99252 * 2 1 3 20 20 C 1.33390 * 125.20554 * 240.00236 * 19 2 1 21 21 C 1.38427 * 114.91977 * 179.97438 * 20 19 2 22 22 C 1.33386 * 114.91951 * 359.97438 * 21 20 19 23 23 S 1.75881 * 109.59635 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47254 * 295.85355 * 1 2 3 25 25 H 1.09005 * 109.46990 * 55.84706 * 1 2 3 26 26 H 1.09001 * 109.47043 * 175.84816 * 1 2 3 27 27 H 0.96996 * 119.99581 * 179.97438 * 10 9 7 28 28 H 1.09001 * 109.47208 * 35.29065 * 15 6 4 29 29 H 1.08991 * 109.47410 * 155.29575 * 15 6 4 30 30 H 0.96696 * 116.99423 * 179.97438 * 18 16 15 31 31 H 1.08003 * 122.53555 * 359.95462 * 20 19 2 32 32 H 1.07997 * 122.53611 * 180.02562 * 21 20 19 33 33 H 1.08000 * 125.20244 * 180.26896 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.1025 -1.9212 -1.2454 6 7 2.4037 -0.0005 -2.3141 7 6 2.4103 1.3697 -2.2667 8 1 1.8639 1.8858 -1.4912 9 6 3.1200 2.0942 -3.2165 10 7 4.0121 1.4922 -3.9705 11 14 2.8059 3.9242 -3.4215 12 1 3.0993 4.6229 -2.1444 13 1 3.6838 4.4602 -4.4926 14 1 1.3845 4.1442 -3.7910 15 6 2.8002 -0.6928 -3.5428 16 6 4.2575 -1.0678 -3.4601 17 8 4.8992 -0.7853 -2.4760 18 8 4.8427 -1.7156 -4.4798 19 6 2.0323 -0.7103 1.2306 20 6 2.8024 -0.1644 2.1731 21 6 3.1394 -1.0121 3.2142 22 6 2.6426 -2.2462 3.1174 23 16 1.6919 -2.3855 1.6442 24 1 -0.3634 0.4481 0.9248 25 1 -0.3633 0.5770 -0.8505 26 1 -0.3633 -1.0250 -0.0744 27 1 4.5072 1.9980 -4.6337 28 1 2.1993 -1.5944 -3.6619 29 1 2.6421 -0.0352 -4.3975 30 1 5.7793 -1.9346 -4.3809 31 1 3.1378 0.8612 2.1271 32 1 3.7571 -0.6978 4.0424 33 1 2.7970 -3.0376 3.8359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736202203.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:57 Heat of formation + Delta-G solvation = -99.622087 kcal Electronic energy + Delta-G solvation = -20651.334954 eV Core-core repulsion = 17382.715827 eV Total energy + Delta-G solvation = -3268.619128 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.30754 -40.18698 -38.53958 -37.02715 -36.43240 -34.64061 -33.44296 -29.95016 -29.26919 -26.80492 -25.48502 -24.04470 -22.40545 -21.07694 -20.18093 -19.19930 -18.75736 -18.07632 -17.49462 -17.27136 -16.43584 -16.19646 -16.08656 -15.95042 -15.37048 -14.77178 -14.46576 -13.91486 -13.60917 -13.50286 -13.45405 -13.28095 -13.06903 -12.95717 -12.70680 -12.61909 -12.42157 -12.18263 -12.12943 -11.91537 -11.52990 -11.43691 -10.96927 -10.47254 -9.89488 -9.45832 -9.21048 -8.36734 -5.96007 0.16582 0.86432 1.29467 1.44812 1.50463 1.59911 1.75514 1.83291 1.97560 2.28617 2.52866 2.91321 3.18302 3.79204 4.11328 4.27857 4.32280 4.40617 4.50424 4.71916 4.75316 4.79112 4.88689 4.91146 4.99189 5.18756 5.29377 5.41772 5.50867 5.66896 5.71657 5.91753 6.31867 7.06948 7.37604 7.48186 7.86189 8.69920 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017765 B = 0.006847 C = 0.005763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.784628 B = 4088.466679 C = 4857.278123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.031 4.031 3 H 0.108 0.892 4 C 0.466 3.534 5 O -0.614 6.614 6 N -0.440 5.440 7 C -0.350 4.350 8 H 0.120 0.880 9 C -0.007 4.007 10 N -0.904 5.904 11 Si 0.997 3.003 12 H -0.269 1.269 13 H -0.289 1.289 14 H -0.258 1.258 15 C 0.155 3.845 16 C 0.504 3.496 17 O -0.554 6.554 18 O -0.523 6.523 19 C -0.171 4.171 20 C -0.155 4.155 21 C -0.141 4.141 22 C -0.232 4.232 23 S 0.113 5.887 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.272 0.728 28 H 0.086 0.914 29 H 0.127 0.873 30 H 0.410 0.590 31 H 0.144 0.856 32 H 0.163 0.837 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.469 -0.903 6.584 8.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.053 4.053 3 H 0.126 0.874 4 C 0.256 3.744 5 O -0.501 6.501 6 N -0.158 5.158 7 C -0.477 4.477 8 H 0.137 0.863 9 C -0.207 4.207 10 N -0.544 5.544 11 Si 0.821 3.179 12 H -0.194 1.194 13 H -0.214 1.214 14 H -0.183 1.183 15 C 0.030 3.970 16 C 0.346 3.654 17 O -0.443 6.443 18 O -0.335 6.335 19 C -0.289 4.289 20 C -0.185 4.185 21 C -0.172 4.172 22 C -0.368 4.368 23 S 0.377 5.623 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.144 0.856 30 H 0.269 0.731 31 H 0.162 0.838 32 H 0.181 0.819 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.374 -2.443 5.953 8.383 hybrid contribution 2.005 1.776 0.178 2.685 sum -3.368 -0.667 6.131 7.027 Atomic orbital electron populations 1.21672 0.90420 1.02353 1.03836 1.19690 0.98511 0.99537 0.87596 0.87392 1.20654 0.81826 0.87264 0.84704 1.90516 1.61331 1.15269 1.82992 1.43587 1.56455 1.06711 1.09030 1.20084 1.31448 0.79945 1.16184 0.86259 1.26132 0.93515 1.04779 0.96310 1.69844 1.22181 1.38930 1.23426 0.84912 0.78665 0.76371 0.77967 1.19414 1.21433 1.18265 1.20545 0.87354 0.97806 0.91338 1.23829 0.91800 0.70979 0.78752 1.90536 1.66128 1.52608 1.35024 1.84458 1.31880 1.71083 1.46097 1.24295 1.06284 0.97838 1.00466 1.20407 1.00359 1.02484 0.95296 1.20321 1.03246 0.93000 1.00610 1.26089 1.06550 1.02156 1.01994 1.84398 1.51036 1.10571 1.16291 0.89465 0.90881 0.93047 0.91814 0.89638 0.85578 0.73075 0.83823 0.81930 0.79434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 9.08 71.98 0.65 -3.34 16 2 C -0.03 -1.21 2.57 -12.29 -0.03 -1.24 16 3 H 0.11 4.26 5.83 -2.39 -0.01 4.25 16 4 C 0.47 22.47 6.40 87.66 0.56 23.03 16 5 O -0.61 -32.15 15.01 -3.07 -0.05 -32.20 16 6 N -0.44 -21.85 2.17 -639.61 -1.39 -23.24 16 7 C -0.35 -16.93 9.03 84.04 0.76 -16.17 16 8 H 0.12 5.25 5.93 -2.91 -0.02 5.23 16 9 C -0.01 -0.31 5.04 84.93 0.43 0.12 16 10 N -0.90 -46.16 8.93 21.66 0.19 -45.96 16 11 Si 1.00 37.91 29.58 68.60 2.03 39.94 16 12 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 13 H -0.29 -11.14 7.11 99.48 0.71 -10.43 16 14 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 15 C 0.16 7.49 5.11 85.63 0.44 7.93 16 16 C 0.50 25.11 6.45 71.24 0.46 25.57 16 17 O -0.55 -31.78 16.85 21.96 0.37 -31.41 16 18 O -0.52 -21.17 13.42 -51.48 -0.69 -21.87 16 19 C -0.17 -6.47 4.99 24.59 0.12 -6.35 16 20 C -0.15 -5.24 10.01 21.22 0.21 -5.03 16 21 C -0.14 -4.05 10.18 21.22 0.22 -3.84 16 22 C -0.23 -6.59 11.23 66.72 0.75 -5.84 16 23 S 0.11 3.95 21.85 -56.49 -1.23 2.71 16 24 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 27 H 0.27 13.35 8.31 -92.71 -0.77 12.58 16 28 H 0.09 3.89 7.65 -2.39 -0.02 3.87 16 29 H 0.13 6.06 6.27 -2.39 -0.01 6.05 16 30 H 0.41 12.83 9.10 -74.06 -0.67 12.16 16 31 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 32 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 33 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -67.49 300.93 4.29 -63.20 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.48 Total: 33.97 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 4.57 Total: 14.85 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -1.19 Total: -69.20 kcal Atomic # 8 Polarization: -85.11 SS G_CDS: -0.37 Total: -85.48 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.23 Total: 2.71 kcal Total: -67.49 4.29 -63.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736202203.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.418 kcal (2) G-P(sol) polarization free energy of solvation -67.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds