Wall clock time and date at job start Tue Mar 31 2020 06:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.46700 * 2 1 4 4 C 1.37444 * 123.35925 * 265.02310 * 3 2 1 5 5 C 1.33851 * 115.10857 * 179.97438 * 4 3 2 6 6 S 1.70614 * 110.96787 * 0.02562 * 5 4 3 7 7 C 1.36762 * 123.35902 * 84.73206 * 3 2 1 8 8 C 1.46456 * 125.46742 * 0.02562 * 7 3 2 9 9 O 1.21743 * 119.99536 * 6.49598 * 8 7 3 10 10 N 1.34775 * 120.00236 * 186.49560 * 8 7 3 11 11 C 1.36890 * 119.99775 * 185.01968 * 10 8 7 12 12 H 1.07991 * 120.00084 * 353.09372 * 11 10 8 13 13 C 1.39009 * 119.99597 * 173.09412 * 11 10 8 14 14 N 1.31397 * 119.99943 * 328.69725 * 13 11 10 15 15 Si 1.86793 * 119.99965 * 148.70296 * 13 11 10 16 16 H 1.48499 * 109.47290 * 94.99225 * 15 13 11 17 17 H 1.48502 * 109.47290 * 214.99688 * 15 13 11 18 18 H 1.48511 * 109.47036 * 334.99577 * 15 13 11 19 19 C 1.46502 * 119.99840 * 5.01727 * 10 8 7 20 20 C 1.50701 * 109.47153 * 276.27381 * 19 10 8 21 21 O 1.20828 * 119.99751 * 0.02562 * 20 19 10 22 22 O 1.34229 * 119.99827 * 180.02562 * 20 19 10 23 23 H 1.08995 * 109.47370 * 300.00077 * 1 2 3 24 24 H 1.09004 * 109.47476 * 60.00030 * 1 2 3 25 25 H 1.08998 * 109.47102 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47158 * 119.99594 * 2 1 3 27 27 H 1.09004 * 109.47122 * 240.00475 * 2 1 3 28 28 H 1.08002 * 122.44654 * 359.95709 * 4 3 2 29 29 H 1.07997 * 124.51679 * 179.97438 * 5 4 3 30 30 H 0.96997 * 119.99842 * 180.02562 * 14 13 11 31 31 H 1.09000 * 109.47101 * 36.27487 * 19 10 8 32 32 H 1.09002 * 109.46483 * 156.27344 * 19 10 8 33 33 H 0.96699 * 116.99650 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3780 2.1003 -1.1437 5 6 2.8032 3.3549 -0.9523 6 16 2.7924 3.7571 0.7057 7 6 2.1839 2.1649 1.1375 8 6 1.8899 1.7077 2.4974 9 8 1.5872 0.5455 2.6968 10 7 1.9545 2.5736 3.5282 11 6 1.7809 2.1259 4.8101 12 1 1.4825 1.1036 4.9892 13 6 1.9888 2.9871 5.8812 14 7 2.8814 3.9469 5.7889 15 14 0.9992 2.7800 7.4519 16 1 1.7718 1.9602 8.4193 17 1 0.7234 4.1142 8.0428 18 1 -0.2848 2.1009 7.1421 19 6 2.2105 3.9940 3.2767 20 6 3.6945 4.2214 3.1453 21 8 4.4596 3.2922 3.2505 22 8 4.1661 5.4562 2.9115 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 2.3117 1.6542 -2.1250 29 1 3.1128 4.0233 -1.7422 30 1 3.0267 4.5476 6.5364 31 1 1.7137 4.2950 2.3544 32 1 1.8244 4.5853 4.1071 33 1 5.1252 5.5526 2.8353 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737275754.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:45 Heat of formation + Delta-G solvation = -74.582576 kcal Electronic energy + Delta-G solvation = -21003.548133 eV Core-core repulsion = 17736.014800 eV Total energy + Delta-G solvation = -3267.533333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.67451 -38.71335 -37.27032 -35.30539 -34.62600 -32.25293 -32.05565 -28.98652 -27.86727 -25.59182 -24.11780 -21.87170 -21.43129 -20.49250 -17.81726 -17.38830 -17.34905 -17.00046 -15.82857 -15.61827 -15.11582 -14.66577 -14.33930 -13.98544 -13.81993 -13.52189 -13.07945 -12.59497 -12.48261 -12.18061 -12.00503 -11.86376 -11.78271 -11.31404 -11.14682 -10.83515 -10.65718 -10.57026 -10.39826 -10.34010 -10.06637 -9.80675 -9.12694 -8.59702 -8.22212 -8.19558 -7.86403 -6.70275 -3.92726 1.10371 2.01800 2.40099 2.88514 3.09104 3.17007 3.25573 3.38498 3.68074 4.00624 4.19958 4.57102 4.94078 5.24906 5.45008 5.59652 5.62461 5.67787 5.86173 5.93537 6.14678 6.18516 6.24505 6.38495 6.46323 6.52487 6.73248 6.88923 7.05467 7.34322 7.37065 7.82564 8.19767 8.84278 8.91678 9.11024 9.69898 10.37351 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019087 B = 0.008177 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.638203 B = 3423.264600 C = 4587.161387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.065 4.065 3 C -0.061 4.061 4 C -0.134 4.134 5 C -0.283 4.283 6 S 0.179 5.821 7 C -0.217 4.217 8 C 0.515 3.485 9 O -0.562 6.562 10 N -0.414 5.414 11 C -0.302 4.302 12 H 0.118 0.882 13 C 0.032 3.968 14 N -0.858 5.858 15 Si 0.923 3.077 16 H -0.276 1.276 17 H -0.279 1.279 18 H -0.265 1.265 19 C 0.117 3.883 20 C 0.487 3.513 21 O -0.497 6.497 22 O -0.526 6.526 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.131 0.869 29 H 0.155 0.845 30 H 0.276 0.724 31 H 0.089 0.911 32 H 0.146 0.854 33 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 4.198 -9.115 10.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 C -0.075 4.075 4 C -0.166 4.166 5 C -0.420 4.420 6 S 0.450 5.550 7 C -0.337 4.337 8 C 0.306 3.694 9 O -0.447 6.447 10 N -0.131 5.131 11 C -0.430 4.430 12 H 0.136 0.864 13 C -0.173 4.173 14 N -0.496 5.496 15 Si 0.748 3.252 16 H -0.202 1.202 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.011 4.011 20 C 0.326 3.674 21 O -0.383 6.383 22 O -0.338 6.338 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.149 0.851 29 H 0.173 0.827 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.164 0.836 33 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.262 4.782 -8.053 9.451 hybrid contribution 0.318 -0.841 -0.240 0.931 sum -0.944 3.941 -8.293 9.230 Atomic orbital electron populations 1.21591 0.95033 1.01033 1.01498 1.20301 0.95995 0.91105 1.03045 1.19316 1.00092 0.97620 0.90482 1.19771 1.03655 0.94137 0.98995 1.25477 1.10809 1.01601 1.04066 1.83548 1.61175 1.13083 0.97197 1.24872 1.12334 0.97824 0.98714 1.16571 0.84963 0.85686 0.82228 1.90617 1.53691 1.16671 1.83706 1.43478 1.58917 1.04025 1.06685 1.19796 1.43682 0.99821 0.79660 0.86396 1.25294 0.95635 0.96431 0.99966 1.70032 1.26259 1.19402 1.33912 0.85979 0.80748 0.78000 0.80504 1.20201 1.20437 1.18878 1.21267 0.89369 0.87084 1.03411 1.23490 0.93030 0.79782 0.71128 1.90655 1.58729 1.43658 1.45272 1.84511 1.30089 1.34332 1.84826 0.92043 0.93811 0.92978 0.88426 0.92400 0.85111 0.82722 0.91390 0.89382 0.83628 0.74838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.84 37.16 0.37 -1.79 16 2 C -0.07 -1.15 5.54 -27.88 -0.15 -1.30 16 3 C -0.06 -1.16 5.16 -105.44 -0.54 -1.70 16 4 C -0.13 -2.15 9.96 -41.41 -0.41 -2.57 16 5 C -0.28 -4.35 10.92 29.19 0.32 -4.03 16 6 S 0.18 3.19 15.72 -107.50 -1.69 1.50 16 7 C -0.22 -4.65 6.19 -36.81 -0.23 -4.88 16 8 C 0.52 13.00 7.34 -12.95 -0.10 12.91 16 9 O -0.56 -15.25 13.62 5.15 0.07 -15.18 16 10 N -0.41 -10.52 2.18 -117.66 -0.26 -10.78 16 11 C -0.30 -8.13 9.39 -15.01 -0.14 -8.27 16 12 H 0.12 3.32 7.34 -52.49 -0.39 2.93 16 13 C 0.03 0.80 4.73 -17.45 -0.08 0.71 16 14 N -0.86 -21.56 9.89 55.50 0.55 -21.01 16 15 Si 0.92 19.43 29.65 -169.99 -5.04 14.39 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 19 C 0.12 2.58 4.78 -5.19 -0.02 2.56 16 20 C 0.49 10.64 3.82 36.01 0.14 10.77 16 21 O -0.50 -12.77 16.94 -18.75 -0.32 -13.09 16 22 O -0.53 -9.11 13.29 -39.25 -0.52 -9.63 16 23 H 0.06 1.14 7.89 -51.93 -0.41 0.73 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.10 2.01 6.20 -51.93 -0.32 1.69 16 27 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 28 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.28 6.49 8.31 -40.82 -0.34 6.15 16 31 H 0.09 1.71 5.03 -26.51 -0.13 1.58 16 32 H 0.15 3.26 5.95 -51.93 -0.31 2.96 16 33 H 0.39 5.17 9.10 45.56 0.41 5.59 16 LS Contribution 290.63 15.07 4.38 4.38 Total: -1.00 -31.55 290.63 -6.08 -37.62 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -2.39 Total: 9.38 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.86 Total: 2.41 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.29 Total: -31.79 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.77 Total: -37.89 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.04 Total: 14.39 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.69 Total: 1.50 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.55 -6.08 -37.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737275754.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.959 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds