Wall clock time and date at job start Tue Mar 31 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32763 * 124.70063 * 2 1 4 4 C 1.44443 * 113.08663 * 180.24524 * 3 2 1 5 5 C 1.47114 * 123.46998 * 179.69842 * 4 3 2 6 6 O 1.21669 * 119.99646 * 232.76547 * 5 4 3 7 7 N 1.34771 * 120.00251 * 52.75744 * 5 4 3 8 8 C 1.36975 * 120.00098 * 184.63602 * 7 5 4 9 9 H 1.08003 * 119.99775 * 322.45739 * 8 7 5 10 10 C 1.38963 * 120.00131 * 142.46044 * 8 7 5 11 11 N 1.31418 * 120.00333 * 157.45031 * 10 8 7 12 12 Si 1.86801 * 120.00042 * 337.44411 * 10 8 7 13 13 H 1.48503 * 109.46741 * 91.76348 * 12 10 8 14 14 H 1.48489 * 109.47572 * 211.76442 * 12 10 8 15 15 H 1.48499 * 109.47033 * 331.76832 * 12 10 8 16 16 C 1.46500 * 120.00128 * 4.64182 * 7 5 4 17 17 C 1.50697 * 109.47378 * 84.94194 * 16 7 5 18 18 O 1.20818 * 120.00146 * 0.02562 * 17 16 7 19 19 O 1.34226 * 119.99850 * 180.02562 * 17 16 7 20 20 C 1.36093 * 113.05584 * 359.50469 * 4 3 2 21 21 C 1.50703 * 124.59545 * 180.21943 * 20 4 3 22 22 S 1.70442 * 110.81064 * 0.48053 * 20 4 3 23 23 H 1.09003 * 109.46988 * 90.00206 * 1 2 3 24 24 H 1.09004 * 109.46774 * 209.99696 * 1 2 3 25 25 H 1.09002 * 109.47217 * 329.99952 * 1 2 3 26 26 H 1.08000 * 123.45590 * 359.97438 * 3 2 1 27 27 H 0.97001 * 120.00653 * 179.97438 * 11 10 8 28 28 H 1.08998 * 109.46853 * 204.94557 * 16 7 5 29 29 H 1.08999 * 109.46877 * 324.94550 * 16 7 5 30 30 H 0.96700 * 117.00232 * 180.02562 * 19 17 16 31 31 H 1.08997 * 109.47290 * 180.31995 * 21 20 4 32 32 H 1.09001 * 109.47305 * 300.32417 * 21 20 4 33 33 H 1.09004 * 109.47125 * 60.31699 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.0915 0.0000 4 6 3.6776 0.8007 -0.0057 5 6 4.7194 1.8394 -0.0133 6 8 5.5965 1.8151 -0.8562 7 7 4.7021 2.8180 0.9133 8 6 5.6147 3.8374 0.8498 9 1 6.6297 3.6352 0.5408 10 6 5.2348 5.1319 1.1830 11 7 6.1413 6.0080 1.5542 12 14 3.4353 5.6269 1.1032 13 1 2.8019 5.4057 2.4280 14 1 3.3325 7.0628 0.7390 15 1 2.7409 4.8056 0.0793 16 6 3.7074 2.7913 1.9884 17 6 4.2103 1.9282 3.1168 18 8 5.2891 1.3910 3.0319 19 8 3.4596 1.7564 4.2162 20 6 3.9477 -0.5331 0.0009 21 6 5.3333 -1.1257 0.0020 22 16 2.5063 -1.4428 0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 1.8610 2.0940 -0.0004 27 1 5.8762 6.9117 1.7864 28 1 3.5393 3.8046 2.3531 29 1 2.7716 2.3822 1.6075 30 1 3.8245 1.1945 4.9135 31 1 5.2634 -2.2134 0.0021 32 1 5.8701 -0.7961 -0.8876 33 1 5.8688 -0.7959 0.8923 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738319303.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:45 Heat of formation + Delta-G solvation = -78.883348 kcal Electronic energy + Delta-G solvation = -20833.107493 eV Core-core repulsion = 17565.387665 eV Total energy + Delta-G solvation = -3267.719828 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06452 -38.88354 -36.78336 -35.68155 -34.84581 -32.84008 -32.16394 -29.26486 -28.05419 -26.11188 -24.39784 -22.83369 -21.74081 -19.90182 -18.29658 -17.68457 -17.34281 -16.82843 -16.36639 -15.70109 -15.55364 -14.89908 -14.40590 -14.05892 -13.62700 -13.55693 -13.12861 -12.98403 -12.86028 -12.75585 -12.58913 -12.35933 -11.92766 -11.69587 -11.36312 -11.28070 -11.09890 -10.93864 -10.80405 -10.54758 -10.11119 -10.01107 -9.21860 -8.73489 -8.40583 -8.10222 -7.89603 -6.49015 -4.06724 1.15135 1.69359 2.09911 2.45221 2.75042 2.91434 3.12865 3.14511 3.26335 3.94701 4.02494 4.35845 4.77419 4.98049 5.12642 5.23522 5.40348 5.44150 5.47662 5.56146 5.69296 5.76026 5.82869 5.90879 5.95084 6.17825 6.28106 6.43519 6.60038 6.90223 7.41421 8.17781 8.33062 8.42544 8.83280 9.17919 9.60517 10.62696 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.007415 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.363297 B = 3775.082196 C = 3910.450337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.203 4.203 3 C -0.115 4.115 4 C -0.144 4.144 5 C 0.544 3.456 6 O -0.541 6.541 7 N -0.442 5.442 8 C -0.315 4.315 9 H 0.111 0.889 10 C 0.061 3.939 11 N -0.853 5.853 12 Si 0.858 3.142 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.257 1.257 16 C 0.091 3.909 17 C 0.459 3.541 18 O -0.493 6.493 19 O -0.526 6.526 20 C -0.162 4.162 21 C -0.083 4.083 22 S 0.145 5.855 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.147 0.853 27 H 0.276 0.724 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.400 0.600 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.924 -11.488 1.941 17.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.319 4.319 3 C -0.145 4.145 4 C -0.160 4.160 5 C 0.331 3.669 6 O -0.421 6.421 7 N -0.163 5.163 8 C -0.443 4.443 9 H 0.128 0.872 10 C -0.146 4.146 11 N -0.488 5.488 12 Si 0.684 3.316 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.181 1.181 16 C -0.035 4.035 17 C 0.299 3.701 18 O -0.378 6.378 19 O -0.337 6.337 20 C -0.281 4.281 21 C -0.142 4.142 22 S 0.410 5.590 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.165 0.835 27 H 0.087 0.913 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.258 0.742 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.543 -12.713 1.209 17.901 hybrid contribution -0.272 1.744 0.659 1.885 sum -12.816 -10.969 1.868 16.972 Atomic orbital electron populations 1.20305 0.87733 1.03016 1.02620 1.24164 0.99958 0.95954 1.11830 1.21167 0.91182 0.99284 1.02818 1.20484 0.94027 0.93676 1.07858 1.17426 0.85370 0.82084 0.82020 1.90673 1.37491 1.75268 1.38667 1.43220 1.30733 1.23196 1.19194 1.19057 0.93284 0.84626 1.47291 0.87187 1.25375 0.97976 0.95640 0.95622 1.69764 1.34338 1.05684 1.39051 0.87265 0.86041 0.79409 0.78888 1.19606 1.20466 1.18124 1.21792 0.94519 1.00395 0.86803 1.24511 0.83162 0.79773 0.82683 1.90687 1.21692 1.45778 1.79640 1.84568 1.52198 1.67815 1.29134 1.24257 1.01056 0.96380 1.06439 1.20373 0.90246 0.98919 1.04632 1.82648 0.94176 1.08981 1.73147 0.90909 0.91449 0.90554 0.83547 0.91331 0.86794 0.87254 0.74226 0.91966 0.89388 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.34 36.01 0.37 -0.38 16 2 C -0.20 -2.75 6.44 -36.18 -0.23 -2.98 16 3 C -0.11 -1.89 8.09 -39.02 -0.32 -2.21 16 4 C -0.14 -2.87 5.03 -104.63 -0.53 -3.40 16 5 C 0.54 13.41 6.75 -12.66 -0.09 13.33 16 6 O -0.54 -15.13 16.31 5.22 0.09 -15.04 16 7 N -0.44 -11.05 1.71 -117.42 -0.20 -11.25 16 8 C -0.32 -9.04 9.38 -14.99 -0.14 -9.18 16 9 H 0.11 3.57 7.87 -52.48 -0.41 3.16 16 10 C 0.06 1.65 5.27 -17.46 -0.09 1.56 16 11 N -0.85 -24.38 13.96 55.50 0.77 -23.61 16 12 Si 0.86 19.28 25.21 -169.99 -4.28 15.00 16 13 H -0.27 -5.52 6.51 56.52 0.37 -5.15 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 15 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 16 C 0.09 1.90 4.42 -5.19 -0.02 1.88 16 17 C 0.46 9.24 8.36 36.00 0.30 9.54 16 18 O -0.49 -11.49 17.08 -18.74 -0.32 -11.81 16 19 O -0.53 -8.06 13.42 -39.25 -0.53 -8.59 16 20 C -0.16 -2.85 6.34 -35.08 -0.22 -3.07 16 21 C -0.08 -1.39 9.58 36.01 0.35 -1.04 16 22 S 0.14 1.95 22.93 -107.50 -2.46 -0.52 16 23 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.15 2.27 7.34 -52.49 -0.39 1.88 16 27 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.11 2.42 3.45 -51.93 -0.18 2.24 16 29 H 0.11 1.96 4.47 -51.93 -0.23 1.73 16 30 H 0.40 4.23 9.10 45.56 0.41 4.65 16 31 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 32 H 0.09 1.57 7.83 -51.93 -0.41 1.16 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 LS Contribution 300.38 15.07 4.53 4.53 Total: -1.00 -34.18 300.38 -5.51 -39.69 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -2.48 Total: 7.56 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -0.62 Total: 4.06 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.57 Total: -34.86 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.76 Total: -35.45 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.28 Total: 15.00 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.46 Total: -0.52 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.18 -5.51 -39.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738319303.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.191 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds