Wall clock time and date at job start Tue Mar 31 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33394 * 125.20332 * 2 1 4 4 C 1.38419 * 114.91950 * 179.97438 * 3 2 1 5 5 C 1.33387 * 114.92628 * 0.02562 * 4 3 2 6 6 C 1.50696 * 125.20664 * 179.97438 * 5 4 3 7 7 C 1.50692 * 109.47691 * 89.99261 * 6 5 4 8 8 O 1.21297 * 119.99917 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00310 * 180.02562 * 7 6 5 10 10 C 1.37101 * 119.99608 * 180.02562 * 9 7 6 11 11 H 1.07994 * 120.00477 * 16.51676 * 10 9 7 12 12 C 1.38957 * 119.99697 * 196.51147 * 10 9 7 13 13 N 1.31414 * 119.99859 * 21.64487 * 12 10 9 14 14 Si 1.86792 * 120.00087 * 201.64507 * 12 10 9 15 15 H 1.48493 * 109.47634 * 60.00113 * 14 12 10 16 16 H 1.48506 * 109.47290 * 180.02562 * 14 12 10 17 17 H 1.48509 * 109.47209 * 299.99784 * 14 12 10 18 18 C 1.46495 * 120.00029 * 359.97438 * 9 7 6 19 19 C 1.50697 * 109.46960 * 84.06839 * 18 9 7 20 20 O 1.20833 * 120.00371 * 359.97438 * 19 18 9 21 21 O 1.34228 * 120.00258 * 180.02562 * 19 18 9 22 22 S 1.75882 * 125.20412 * 179.70451 * 2 1 3 23 23 H 1.08992 * 109.47660 * 89.99579 * 1 2 3 24 24 H 1.09004 * 109.47060 * 329.99401 * 1 2 3 25 25 H 1.09010 * 109.46654 * 209.99593 * 1 2 3 26 26 H 1.08002 * 122.53888 * 359.96461 * 3 2 1 27 27 H 1.08008 * 122.53824 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.47048 * 209.99725 * 6 5 4 29 29 H 1.08999 * 109.46885 * 329.98816 * 6 5 4 30 30 H 0.97003 * 120.00072 * 180.02562 * 13 12 10 31 31 H 1.08997 * 109.47163 * 204.06617 * 18 9 7 32 32 H 1.09003 * 109.47170 * 324.06787 * 18 9 7 33 33 H 0.96701 * 117.00467 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6379 0.8429 0.0006 5 6 3.9751 -0.4477 0.0005 6 6 5.3860 -0.9770 0.0005 7 6 5.8565 -1.1534 1.4211 8 8 5.1188 -0.8761 2.3432 9 7 7.0974 -1.6184 1.6673 10 6 7.5251 -1.7793 2.9599 11 1 6.8086 -1.7953 3.7678 12 6 8.8805 -1.9220 3.2305 13 7 9.7719 -1.4924 2.3658 14 14 9.4356 -2.7243 4.8234 15 1 8.9089 -4.1112 4.8889 16 1 10.9196 -2.7552 4.8713 17 1 8.9198 -1.9439 5.9768 18 6 7.9886 -1.9528 0.5538 19 6 8.6856 -0.7050 0.0761 20 8 8.4606 0.3550 0.6106 21 8 9.5556 -0.7709 -0.9439 22 16 2.5209 -1.4371 0.0074 23 1 -0.3634 0.0001 -1.0275 24 1 -0.3633 0.8900 0.5139 25 1 -0.3633 -0.8901 0.5138 26 1 1.8669 2.0895 -0.0006 27 1 4.3721 1.6351 0.0002 28 1 5.4136 -1.9379 -0.5134 29 1 6.0388 -0.2714 -0.5135 30 1 10.7182 -1.5923 2.5544 31 1 8.7305 -2.6782 0.8875 32 1 7.4056 -2.3787 -0.2629 33 1 9.9782 0.0557 -1.2146 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738582971.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:48 Heat of formation + Delta-G solvation = -106.068388 kcal Electronic energy + Delta-G solvation = -20099.461725 eV Core-core repulsion = 16830.563065 eV Total energy + Delta-G solvation = -3268.898660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.27446 -40.06315 -38.73888 -37.01285 -36.35597 -34.13655 -33.53202 -30.78679 -29.46328 -27.13987 -25.54839 -23.73482 -22.83969 -21.11223 -19.58949 -19.03158 -18.70253 -18.12308 -17.79512 -17.30548 -16.53474 -16.28807 -16.15864 -15.73862 -15.51946 -14.79716 -14.37116 -14.03783 -13.99367 -13.66330 -13.55741 -13.46399 -13.34871 -12.77047 -12.72880 -12.63476 -12.36248 -12.30643 -12.15523 -12.10093 -11.63316 -11.52599 -10.96306 -10.52518 -9.88364 -9.32962 -9.31245 -8.44639 -5.96167 0.07182 0.72376 1.09385 1.37256 1.42425 1.52875 1.68421 1.82442 1.87066 2.26633 2.53171 2.94980 3.11464 3.73375 3.95044 4.02448 4.14347 4.33534 4.41922 4.50215 4.68117 4.74764 4.79225 4.82033 4.92456 5.12938 5.27699 5.41261 5.44717 5.65727 5.95066 5.99768 6.37973 7.09465 7.28340 7.44693 7.91166 8.61756 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.005194 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.847635 B = 5389.406121 C = 6167.207853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.182 4.182 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.167 4.167 6 C -0.057 4.057 7 C 0.453 3.547 8 O -0.611 6.611 9 N -0.444 5.444 10 C -0.342 4.342 11 H 0.077 0.923 12 C 0.001 3.999 13 N -0.892 5.892 14 Si 0.991 3.009 15 H -0.262 1.262 16 H -0.272 1.272 17 H -0.284 1.284 18 C 0.139 3.861 19 C 0.496 3.504 20 O -0.549 6.549 21 O -0.517 6.517 22 S 0.096 5.904 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.160 0.840 27 H 0.129 0.871 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.275 0.725 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 -1.193 -10.774 13.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.300 4.300 3 C -0.179 4.179 4 C -0.174 4.174 5 C -0.285 4.285 6 C -0.099 4.099 7 C 0.242 3.758 8 O -0.496 6.496 9 N -0.164 5.164 10 C -0.469 4.469 11 H 0.095 0.905 12 C -0.200 4.200 13 N -0.531 5.531 14 Si 0.815 3.185 15 H -0.186 1.186 16 H -0.197 1.197 17 H -0.210 1.210 18 C 0.014 3.986 19 C 0.338 3.662 20 O -0.438 6.438 21 O -0.329 6.329 22 S 0.360 5.640 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.177 0.823 27 H 0.147 0.853 28 H 0.138 0.862 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -9.196 -2.688 -10.064 13.895 hybrid contribution 1.550 2.133 0.915 2.791 sum -7.646 -0.555 -9.149 11.936 Atomic orbital electron populations 1.20435 0.85226 1.03981 1.03966 1.24906 1.01381 0.94703 1.08984 1.20188 0.91903 1.00472 1.05336 1.20238 0.97411 0.95782 1.03943 1.23880 0.97718 0.97147 1.09741 1.20098 0.91711 1.03709 0.94359 1.20730 0.83305 0.80339 0.91378 1.90507 1.56493 1.54709 1.47890 1.43587 1.10852 1.56149 1.05770 1.19563 0.92396 1.50223 0.84721 0.90499 1.25932 0.94873 0.96605 1.02605 1.69873 1.02190 1.42153 1.38874 0.85036 0.77103 0.79067 0.77326 1.18626 1.19675 1.20963 1.20895 0.94811 0.93015 0.89915 1.23829 0.76094 0.91255 0.74979 1.90616 1.64085 1.33430 1.55702 1.84448 1.55691 1.43550 1.49260 1.83865 0.96201 1.10394 1.73531 0.88953 0.89237 0.90900 0.82297 0.85318 0.86246 0.88147 0.91502 0.86064 0.85882 0.72654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.38 71.24 0.74 -0.65 16 2 C -0.18 -4.92 6.51 24.59 0.16 -4.76 16 3 C -0.15 -4.33 10.05 21.22 0.21 -4.12 16 4 C -0.14 -5.03 10.05 21.21 0.21 -4.81 16 5 C -0.17 -6.13 5.00 24.59 0.12 -6.01 16 6 C -0.06 -2.15 4.80 29.10 0.14 -2.01 16 7 C 0.45 22.59 7.41 87.65 0.65 23.24 16 8 O -0.61 -35.56 15.67 -3.08 -0.05 -35.61 16 9 N -0.44 -22.57 2.18 -639.62 -1.39 -23.96 16 10 C -0.34 -19.28 9.34 84.04 0.79 -18.50 16 11 H 0.08 4.69 7.37 -2.91 -0.02 4.67 16 12 C 0.00 0.08 4.87 84.93 0.41 0.49 16 13 N -0.89 -46.13 9.29 21.67 0.20 -45.93 16 14 Si 0.99 42.05 29.60 68.60 2.03 44.08 16 15 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 16 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 18 C 0.14 5.79 4.97 85.63 0.43 6.22 16 19 C 0.50 21.02 5.86 71.23 0.42 21.44 16 20 O -0.55 -28.25 16.79 21.94 0.37 -27.88 16 21 O -0.52 -16.87 13.42 -51.39 -0.69 -17.56 16 22 S 0.10 3.00 23.31 -56.49 -1.32 1.68 16 23 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 27 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 28 H 0.12 3.63 7.42 -2.39 -0.02 3.61 16 29 H 0.10 3.65 7.51 -2.39 -0.02 3.64 16 30 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 31 H 0.12 5.25 6.37 -2.39 -0.02 5.24 16 32 H 0.12 3.88 6.69 -2.39 -0.02 3.86 16 33 H 0.41 10.02 9.10 -74.06 -0.67 9.35 16 Total: -1.00 -75.42 304.15 3.92 -71.50 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.48 Total: 23.15 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 4.28 Total: 10.53 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -1.19 Total: -69.89 kcal Atomic # 8 Polarization: -80.68 SS G_CDS: -0.37 Total: -81.05 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.32 Total: 1.68 kcal Total: -75.42 3.92 -71.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738582971.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.568 kcal (2) G-P(sol) polarization free energy of solvation -75.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds