Wall clock time and date at job start Tue Mar 31 2020 06:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47440 * 2 1 4 4 C 1.50701 * 109.47356 * 120.00699 * 2 1 3 5 5 O 1.20823 * 120.00552 * 119.99422 * 4 2 1 6 6 O 1.34237 * 119.99472 * 299.99673 * 4 2 1 7 7 C 1.45207 * 116.99627 * 180.02562 * 6 4 2 8 8 C 1.50700 * 109.46831 * 179.97438 * 7 6 4 9 9 O 1.21296 * 119.99801 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00070 * 179.97438 * 8 7 6 11 11 C 1.37100 * 120.00317 * 180.02562 * 10 8 7 12 12 H 1.07995 * 119.99815 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00070 * 180.02562 * 11 10 8 14 14 N 1.31416 * 119.99927 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99919 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46917 * 59.99797 * 15 13 11 17 17 H 1.48504 * 109.47137 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46867 * 299.99957 * 15 13 11 19 19 C 1.50707 * 109.46999 * 240.00150 * 2 1 3 20 20 C 1.33388 * 125.19940 * 120.00096 * 19 2 1 21 21 C 1.38433 * 114.91766 * 179.97438 * 20 19 2 22 22 C 1.33389 * 114.92022 * 0.02562 * 21 20 19 23 23 S 1.75879 * 125.20222 * 299.97622 * 19 2 1 24 24 H 1.09000 * 109.47440 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47030 * 299.99413 * 1 2 3 26 26 H 1.09002 * 109.47275 * 59.99669 * 1 2 3 27 27 H 1.08998 * 109.46971 * 300.00177 * 7 6 4 28 28 H 1.08997 * 109.46812 * 59.99957 * 7 6 4 29 29 H 0.97002 * 119.99753 * 0.02562 * 10 8 7 30 30 H 0.97002 * 119.99882 * 180.02562 * 14 13 11 31 31 H 1.08000 * 122.54563 * 359.95533 * 20 19 2 32 32 H 1.07998 * 122.53579 * 180.02562 * 21 20 19 33 33 H 1.07995 * 125.20209 * 180.26467 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7269 -1.6929 1.1195 6 8 1.7081 -0.2520 2.4496 7 6 2.2277 -0.9860 3.5896 8 6 1.7638 -0.3288 4.8639 9 8 1.0643 0.6610 4.8160 10 7 2.1259 -0.8410 6.0568 11 6 1.7034 -0.2435 7.2161 12 1 1.0807 0.6378 7.1735 13 6 2.0773 -0.7712 8.4460 14 7 2.8355 -1.8434 8.4978 15 14 1.5022 0.0433 10.0256 16 1 0.0179 0.0423 10.0710 17 1 2.0331 -0.7077 11.1915 18 1 1.9979 1.4424 10.0699 19 6 2.0323 -0.7104 -1.2305 20 6 2.8024 -0.1645 -2.1730 21 6 3.1404 -1.0127 -3.2135 22 6 2.6442 -2.2470 -3.1163 23 16 1.6932 -2.3861 -1.6432 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 1.8643 -2.0130 3.5567 28 1 3.3172 -0.9848 3.5564 29 1 2.6856 -1.6323 6.0950 30 1 3.0962 -2.2120 9.3563 31 1 3.1367 0.8614 -2.1279 32 1 3.7589 -0.6987 -4.0413 33 1 2.8061 -3.0411 -3.8302 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738793627.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:01 Heat of formation + Delta-G solvation = -90.359974 kcal Electronic energy + Delta-G solvation = -19069.182891 eV Core-core repulsion = 15800.965399 eV Total energy + Delta-G solvation = -3268.217492 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.48560 -38.35463 -37.85780 -36.10722 -34.20550 -33.99399 -31.38336 -28.97179 -28.26285 -25.22804 -24.56745 -23.41008 -20.75867 -19.60181 -19.54686 -18.08274 -17.61488 -17.17660 -16.41031 -16.03350 -15.62091 -15.44775 -14.56207 -14.32275 -14.00925 -13.68949 -13.25337 -13.18353 -12.86382 -12.53733 -12.42374 -12.21249 -11.94405 -11.81951 -11.62252 -11.61363 -11.11563 -10.77419 -10.49380 -10.41095 -10.35140 -10.26495 -9.59931 -8.86372 -8.52401 -8.49570 -8.08743 -6.50232 -3.92433 0.81534 1.51886 1.91240 2.28319 2.47644 2.84671 3.15184 3.22557 3.27373 3.73452 4.10856 4.27886 4.59334 4.80284 4.90221 4.97437 5.10882 5.14794 5.32957 5.38551 5.50184 5.59156 5.63206 5.69589 5.90980 5.99480 6.05063 6.12468 6.30118 6.61315 7.47224 7.82362 7.95422 8.48120 9.06550 9.38899 9.88817 10.66931 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.047207 B = 0.003017 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.991515 B = 9277.288388 C = 9548.842051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 H 0.127 0.873 4 C 0.457 3.543 5 O -0.501 6.501 6 O -0.321 6.321 7 C 0.060 3.940 8 C 0.438 3.562 9 O -0.576 6.576 10 N -0.552 5.552 11 C -0.303 4.303 12 H 0.106 0.894 13 C 0.025 3.975 14 N -0.897 5.897 15 Si 0.935 3.065 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.168 4.168 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.221 4.221 23 S 0.140 5.860 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.395 0.605 30 H 0.274 0.726 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.631 -0.440 -20.771 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 H 0.144 0.856 4 C 0.298 3.702 5 O -0.389 6.389 6 O -0.236 6.236 7 C -0.017 4.017 8 C 0.223 3.777 9 O -0.460 6.460 10 N -0.190 5.190 11 C -0.432 4.432 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.538 5.538 15 Si 0.761 3.239 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.286 4.286 20 C -0.163 4.163 21 C -0.168 4.168 22 C -0.357 4.357 23 S 0.405 5.595 24 H 0.081 0.919 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.228 0.772 30 H 0.084 0.916 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.644 -1.377 -19.949 20.064 hybrid contribution 1.238 0.751 0.182 1.459 sum -0.406 -0.626 -19.768 19.782 Atomic orbital electron populations 1.21869 0.90614 1.03425 1.04368 1.19396 0.98464 0.99813 0.85402 0.85574 1.23517 0.78052 0.83222 0.85366 1.90686 1.35222 1.25617 1.87330 1.86537 1.68661 1.54587 1.13802 1.22764 0.99576 0.95639 0.83739 1.19308 0.86824 0.87656 0.83896 1.90559 1.41400 1.27455 1.86615 1.41699 1.45705 1.27627 1.03922 1.19679 1.29909 1.11490 0.82161 0.87655 1.25315 0.96529 0.96218 0.99664 1.69609 1.35475 1.21401 1.27298 0.85856 0.79110 0.79021 0.79890 1.19742 1.20862 1.19741 1.23963 1.06302 0.97986 1.00299 1.20090 0.99900 1.01650 0.94627 1.20079 1.03148 0.93153 1.00467 1.25723 1.06149 1.01535 1.02319 1.84362 1.49722 1.09287 1.16129 0.91949 0.89638 0.90590 0.89545 0.89554 0.77154 0.91561 0.84204 0.84379 0.82005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.05 37.15 0.34 -1.18 16 2 C -0.01 -0.12 3.20 -92.92 -0.30 -0.41 16 3 H 0.13 1.25 8.08 -51.93 -0.42 0.83 16 4 C 0.46 7.26 7.23 36.01 0.26 7.52 16 5 O -0.50 -8.85 15.00 -18.75 -0.28 -9.13 16 6 O -0.32 -5.95 9.66 -45.92 -0.44 -6.39 16 7 C 0.06 1.16 5.94 36.01 0.21 1.37 16 8 C 0.44 10.57 7.86 -10.99 -0.09 10.49 16 9 O -0.58 -15.94 16.08 -14.12 -0.23 -16.16 16 10 N -0.55 -13.99 5.29 -10.96 -0.06 -14.05 16 11 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 12 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 13 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 14 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 15 Si 0.93 20.69 29.55 -169.99 -5.02 15.66 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 C -0.17 -1.97 4.60 -36.00 -0.17 -2.13 16 20 C -0.13 -1.35 10.01 -41.20 -0.41 -1.76 16 21 C -0.14 -1.29 10.18 -41.20 -0.42 -1.71 16 22 C -0.22 -2.13 11.23 29.04 0.33 -1.80 16 23 S 0.14 1.62 22.18 -107.50 -2.38 -0.77 16 24 H 0.06 0.66 8.00 -51.93 -0.42 0.25 16 25 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 28 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 29 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 312.77 15.07 4.71 4.71 Total: -1.00 -32.37 312.77 -7.09 -39.46 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -3.63 Total: 7.60 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.49 Total: 2.44 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.67 Total: -37.43 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.95 Total: -31.68 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.38 Total: -0.77 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.37 -7.09 -39.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738793627.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.900 kcal (2) G-P(sol) polarization free energy of solvation -32.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds