Wall clock time and date at job start Tue Mar 31 2020 06:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47265 * 239.99748 * 2 1 3 5 5 O 1.20828 * 120.00000 * 239.99968 * 4 2 1 6 6 O 1.34231 * 120.00154 * 59.99914 * 4 2 1 7 7 C 1.45196 * 117.00262 * 179.97438 * 6 4 2 8 8 C 1.50696 * 109.47357 * 180.02562 * 7 6 4 9 9 O 1.21296 * 119.99760 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00377 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00289 * 180.02562 * 10 8 7 12 12 H 1.08006 * 119.99580 * 359.97438 * 11 10 8 13 13 C 1.38947 * 120.00140 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00194 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99866 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47171 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47296 * 120.00095 * 15 13 11 18 18 H 1.48501 * 109.46776 * 239.99720 * 15 13 11 19 19 C 1.50706 * 109.47103 * 120.00046 * 2 1 3 20 20 C 1.33388 * 125.19867 * 240.00315 * 19 2 1 21 21 C 1.38430 * 114.91789 * 179.97438 * 20 19 2 22 22 C 1.33384 * 114.92219 * 0.02562 * 21 20 19 23 23 S 1.75880 * 125.20440 * 59.69044 * 19 2 1 24 24 H 1.08992 * 109.47280 * 299.99853 * 1 2 3 25 25 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47388 * 300.00642 * 7 6 4 28 28 H 1.09000 * 109.47349 * 59.99884 * 7 6 4 29 29 H 0.96996 * 119.99466 * 0.02562 * 10 8 7 30 30 H 0.96993 * 119.99930 * 180.02562 * 14 13 11 31 31 H 1.07997 * 122.54612 * 359.97438 * 20 19 2 32 32 H 1.08004 * 122.53745 * 180.02562 * 21 20 19 33 33 H 1.07997 * 125.20321 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7270 -1.6928 -1.1195 6 8 1.7081 -0.2519 -2.4496 7 6 2.2277 -0.9858 -3.5896 8 6 1.7637 -0.3288 -4.8639 9 8 1.0643 0.6610 -4.8160 10 7 2.1259 -0.8409 -6.0569 11 6 1.7042 -0.2428 -7.2162 12 1 1.0814 0.6385 -7.1735 13 6 2.0772 -0.7711 -8.4460 14 7 2.8346 -1.8438 -8.4979 15 14 1.5020 0.0435 -10.0256 16 1 0.6663 1.2260 -9.6968 17 1 2.6814 0.4751 -10.8179 18 1 0.7006 -0.9237 -10.8178 19 6 2.0323 -0.7104 1.2305 20 6 2.8024 -0.1646 2.1730 21 6 3.1395 -1.0124 3.2141 22 6 2.6436 -2.2468 3.1167 23 16 1.6865 -2.3838 1.6474 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.3173 -0.9848 -3.5565 28 1 1.8644 -2.0129 -3.5568 29 1 2.6850 -1.6326 -6.0951 30 1 3.0953 -2.2123 -9.3564 31 1 3.1375 0.8611 2.1274 32 1 3.7572 -0.6981 4.0424 33 1 2.8019 -3.0396 3.8328 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738793628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:05 Heat of formation + Delta-G solvation = -90.451521 kcal Electronic energy + Delta-G solvation = -19068.946814 eV Core-core repulsion = 15800.725352 eV Total energy + Delta-G solvation = -3268.221462 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.48618 -38.35677 -37.85955 -36.10804 -34.20723 -33.99650 -31.38411 -28.97302 -28.26450 -25.22999 -24.56998 -23.41175 -20.75975 -19.60387 -19.54782 -18.08380 -17.61657 -17.17774 -16.41124 -16.03583 -15.62220 -15.45013 -14.56747 -14.32221 -13.99844 -13.68890 -13.25635 -13.18953 -12.86495 -12.54075 -12.42462 -12.21504 -11.94561 -11.81955 -11.62860 -11.61656 -11.15622 -10.77508 -10.41352 -10.39496 -10.35730 -10.27126 -9.62204 -8.86452 -8.52575 -8.49755 -8.08891 -6.50539 -3.92588 0.81463 1.51746 1.91099 2.28285 2.47623 2.84551 3.11362 3.23594 3.31137 3.73125 4.10795 4.27800 4.59259 4.80125 4.90111 4.97310 5.10793 5.14671 5.32845 5.38479 5.50071 5.59053 5.63058 5.69417 5.90889 5.99372 6.04943 6.12372 6.30025 6.61289 7.47486 7.82427 7.95638 8.47915 9.06644 9.38861 9.88626 10.66786 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.047220 B = 0.003017 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.821597 B = 9279.834425 C = 9550.405477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 H 0.127 0.873 4 C 0.457 3.543 5 O -0.501 6.501 6 O -0.321 6.321 7 C 0.060 3.940 8 C 0.439 3.561 9 O -0.576 6.576 10 N -0.553 5.553 11 C -0.302 4.302 12 H 0.107 0.893 13 C 0.025 3.975 14 N -0.897 5.897 15 Si 0.933 3.067 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.167 4.167 20 C -0.132 4.132 21 C -0.138 4.138 22 C -0.221 4.221 23 S 0.139 5.861 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.395 0.605 30 H 0.273 0.727 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 -0.405 20.822 20.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 H 0.144 0.856 4 C 0.298 3.702 5 O -0.389 6.389 6 O -0.236 6.236 7 C -0.017 4.017 8 C 0.224 3.776 9 O -0.460 6.460 10 N -0.190 5.190 11 C -0.431 4.431 12 H 0.124 0.876 13 C -0.178 4.178 14 N -0.538 5.538 15 Si 0.760 3.240 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.285 4.285 20 C -0.163 4.163 21 C -0.168 4.168 22 C -0.357 4.357 23 S 0.404 5.596 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.228 0.772 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.687 -1.331 20.012 20.127 hybrid contribution 1.257 0.726 -0.195 1.465 sum -0.430 -0.604 19.817 19.831 Atomic orbital electron populations 1.21869 0.90616 1.03423 1.04373 1.19396 0.98459 0.99813 0.85406 0.85572 1.23516 0.78056 0.83223 0.85360 1.90687 1.35216 1.25617 1.87333 1.86532 1.68661 1.54592 1.13802 1.22763 0.99582 0.95644 0.83738 1.19312 0.86795 0.87643 0.83899 1.90561 1.41364 1.27448 1.86618 1.41714 1.45767 1.27602 1.03940 1.19777 1.29788 1.11393 0.82130 0.87552 1.25317 0.96573 0.96225 0.99675 1.69621 1.35620 1.21433 1.27084 0.85743 0.78483 0.79159 0.80632 1.19075 1.20616 1.20617 1.23959 1.06274 0.98015 1.00278 1.20089 0.99953 1.01642 0.94584 1.20078 1.03190 0.93119 1.00457 1.25720 1.06077 1.01545 1.02362 1.84359 1.49272 1.09533 1.16387 0.90589 0.89632 0.91952 0.89549 0.89544 0.77163 0.91671 0.84202 0.84376 0.82003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.04 37.16 0.34 -1.18 16 2 C -0.01 -0.12 3.20 -92.92 -0.30 -0.41 16 3 H 0.13 1.25 8.08 -51.93 -0.42 0.83 16 4 C 0.46 7.26 7.23 36.01 0.26 7.52 16 5 O -0.50 -8.85 15.02 -18.75 -0.28 -9.13 16 6 O -0.32 -5.94 9.66 -45.91 -0.44 -6.39 16 7 C 0.06 1.16 5.94 36.00 0.21 1.37 16 8 C 0.44 10.57 7.86 -10.99 -0.09 10.49 16 9 O -0.58 -15.92 16.08 -14.12 -0.23 -16.15 16 10 N -0.55 -14.00 5.29 -10.96 -0.06 -14.06 16 11 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 12 H 0.11 3.06 7.16 -52.48 -0.38 2.69 16 13 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 14 N -0.90 -24.09 13.05 55.50 0.72 -23.36 16 15 Si 0.93 20.67 29.55 -169.99 -5.02 15.64 16 16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 C -0.17 -1.96 4.60 -36.00 -0.17 -2.13 16 20 C -0.13 -1.35 10.01 -41.21 -0.41 -1.76 16 21 C -0.14 -1.29 10.18 -41.21 -0.42 -1.71 16 22 C -0.22 -2.12 11.23 29.04 0.33 -1.80 16 23 S 0.14 1.61 22.19 -107.50 -2.39 -0.78 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 26 H 0.06 0.66 7.99 -51.93 -0.42 0.25 16 27 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 28 H 0.09 1.52 8.13 -51.93 -0.42 1.09 16 29 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 33 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 312.77 15.07 4.71 4.71 Total: -1.00 -32.41 312.77 -7.09 -39.50 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -3.63 Total: 7.52 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -0.49 Total: 2.48 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.67 Total: -37.42 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.95 Total: -31.66 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.39 Total: -0.78 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.41 -7.09 -39.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738793628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.952 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds