Wall clock time and date at job start Tue Mar 31 2020 06:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47265 * 239.99748 * 2 1 3 5 5 O 1.20828 * 120.00000 * 239.99968 * 4 2 1 6 6 O 1.34231 * 120.00154 * 59.99914 * 4 2 1 7 7 C 1.45196 * 117.00262 * 179.97438 * 6 4 2 8 8 C 1.50696 * 109.47357 * 180.02562 * 7 6 4 9 9 O 1.21296 * 119.99760 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00377 * 180.02562 * 8 7 6 11 11 C 1.37095 * 120.00289 * 180.02562 * 10 8 7 12 12 H 1.08006 * 119.99580 * 359.97438 * 11 10 8 13 13 C 1.38947 * 120.00140 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00194 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99866 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47171 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47296 * 120.00095 * 15 13 11 18 18 H 1.48501 * 109.46776 * 239.99720 * 15 13 11 19 19 C 1.50706 * 109.47103 * 120.00046 * 2 1 3 20 20 C 1.33388 * 125.19867 * 240.00315 * 19 2 1 21 21 C 1.38430 * 114.91789 * 179.97438 * 20 19 2 22 22 C 1.33384 * 114.92219 * 0.02562 * 21 20 19 23 23 S 1.75880 * 125.20440 * 59.69044 * 19 2 1 24 24 H 1.08992 * 109.47280 * 299.99853 * 1 2 3 25 25 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47388 * 300.00642 * 7 6 4 28 28 H 1.09000 * 109.47349 * 59.99884 * 7 6 4 29 29 H 0.96996 * 119.99466 * 0.02562 * 10 8 7 30 30 H 0.96993 * 119.99930 * 180.02562 * 14 13 11 31 31 H 1.07997 * 122.54612 * 359.97438 * 20 19 2 32 32 H 1.08004 * 122.53745 * 180.02562 * 21 20 19 33 33 H 1.07997 * 125.20321 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7270 -1.6928 -1.1195 6 8 1.7081 -0.2519 -2.4496 7 6 2.2277 -0.9858 -3.5896 8 6 1.7637 -0.3288 -4.8639 9 8 1.0643 0.6610 -4.8160 10 7 2.1259 -0.8409 -6.0569 11 6 1.7042 -0.2428 -7.2162 12 1 1.0814 0.6385 -7.1735 13 6 2.0772 -0.7711 -8.4460 14 7 2.8346 -1.8438 -8.4979 15 14 1.5020 0.0435 -10.0256 16 1 0.6663 1.2260 -9.6968 17 1 2.6814 0.4751 -10.8179 18 1 0.7006 -0.9237 -10.8178 19 6 2.0323 -0.7104 1.2305 20 6 2.8024 -0.1646 2.1730 21 6 3.1395 -1.0124 3.2141 22 6 2.6436 -2.2468 3.1167 23 16 1.6865 -2.3838 1.6474 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.3173 -0.9848 -3.5565 28 1 1.8644 -2.0129 -3.5568 29 1 2.6850 -1.6326 -6.0951 30 1 3.0953 -2.2123 -9.3564 31 1 3.1375 0.8611 2.1274 32 1 3.7572 -0.6981 4.0424 33 1 2.8019 -3.0396 3.8328 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738793628.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:04 Heat of formation + Delta-G solvation = -109.991424 kcal Electronic energy + Delta-G solvation = -19069.794128 eV Core-core repulsion = 15800.725352 eV Total energy + Delta-G solvation = -3269.068776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80667 -40.11442 -38.83944 -37.50813 -36.04428 -35.12093 -33.42594 -30.25035 -29.43305 -26.78977 -25.84248 -24.39991 -21.93766 -21.43776 -20.34404 -20.08521 -18.83184 -18.35913 -17.77486 -17.55723 -17.01719 -16.46249 -16.39050 -15.83166 -15.71805 -14.78989 -14.73309 -14.18894 -13.85155 -13.80466 -13.60430 -13.56879 -13.17376 -13.15440 -12.94755 -12.67472 -12.50649 -12.47439 -12.11081 -11.88349 -11.63489 -11.59388 -11.47831 -10.52944 -10.13021 -9.64918 -9.33497 -8.53449 -6.04205 0.01667 0.72005 1.03252 1.13509 1.34078 1.35338 1.44720 1.58592 1.85265 1.90617 2.29639 3.02047 3.12026 3.38926 3.65648 3.91907 4.02189 4.12532 4.18321 4.19943 4.27003 4.62277 4.69442 4.77882 4.79700 5.13270 5.20267 5.28196 5.36343 5.36975 5.59230 5.87861 6.43657 6.59045 7.01762 7.38346 7.91540 8.63876 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.047220 B = 0.003017 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.821597 B = 9279.834425 C = 9550.405477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.004 4.004 3 H 0.149 0.851 4 C 0.456 3.544 5 O -0.520 6.520 6 O -0.338 6.338 7 C 0.071 3.929 8 C 0.438 3.562 9 O -0.616 6.616 10 N -0.558 5.558 11 C -0.337 4.337 12 H 0.085 0.915 13 C -0.009 4.009 14 N -0.916 5.916 15 Si 0.999 3.001 16 H -0.270 1.270 17 H -0.269 1.269 18 H -0.269 1.269 19 C -0.188 4.188 20 C -0.126 4.126 21 C -0.143 4.143 22 C -0.213 4.213 23 S 0.088 5.912 24 H 0.101 0.899 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.399 0.601 30 H 0.281 0.719 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 -0.083 21.925 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 H 0.166 0.834 4 C 0.299 3.701 5 O -0.408 6.408 6 O -0.253 6.253 7 C -0.006 4.006 8 C 0.224 3.776 9 O -0.503 6.503 10 N -0.196 5.196 11 C -0.466 4.466 12 H 0.103 0.897 13 C -0.210 4.210 14 N -0.556 5.556 15 Si 0.821 3.179 16 H -0.195 1.195 17 H -0.194 1.194 18 H -0.195 1.195 19 C -0.305 4.305 20 C -0.157 4.157 21 C -0.173 4.173 22 C -0.348 4.348 23 S 0.353 5.647 24 H 0.120 0.880 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.234 0.766 30 H 0.090 0.910 31 H 0.180 0.820 32 H 0.184 0.816 33 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.090 -1.035 21.133 21.186 hybrid contribution 1.123 0.604 -0.427 1.345 sum 0.034 -0.431 20.706 20.710 Atomic orbital electron populations 1.21860 0.89687 1.03225 1.05060 1.19530 0.99162 1.00354 0.83421 0.83354 1.24370 0.77396 0.83110 0.85219 1.90672 1.36217 1.26588 1.87365 1.86544 1.69188 1.55028 1.14524 1.22509 1.00423 0.95633 0.82068 1.20064 0.85535 0.86944 0.85042 1.90525 1.42998 1.29269 1.87463 1.41754 1.45948 1.27753 1.04107 1.19765 1.31275 1.11869 0.83706 0.89702 1.26141 0.96092 0.96533 1.02229 1.69679 1.35633 1.21955 1.28332 0.84791 0.78306 0.78163 0.76598 1.19474 1.19435 1.19461 1.23964 1.07953 0.97811 1.00790 1.20472 0.98412 1.02757 0.94024 1.20440 1.03165 0.92770 1.00966 1.26034 1.04927 1.02475 1.01409 1.84522 1.50874 1.10752 1.18570 0.88007 0.90723 0.92645 0.87754 0.87849 0.76619 0.90959 0.82024 0.81588 0.79697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.04 71.98 0.65 -2.16 16 2 C 0.00 -0.09 3.20 -12.29 -0.04 -0.13 16 3 H 0.15 2.64 8.08 -2.39 -0.02 2.62 16 4 C 0.46 14.24 7.23 71.24 0.51 14.75 16 5 O -0.52 -18.13 15.02 21.96 0.33 -17.80 16 6 O -0.34 -12.45 9.66 -45.07 -0.44 -12.88 16 7 C 0.07 2.71 5.94 71.23 0.42 3.14 16 8 C 0.44 21.47 7.86 87.66 0.69 22.16 16 9 O -0.62 -34.96 16.08 15.72 0.25 -34.71 16 10 N -0.56 -28.79 5.29 -306.98 -1.62 -30.42 16 11 C -0.34 -18.96 9.68 84.04 0.81 -18.14 16 12 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 13 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 14 N -0.92 -48.77 13.05 21.66 0.28 -48.49 16 15 Si 1.00 42.01 29.55 68.60 2.03 44.04 16 16 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 17 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 18 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 19 C -0.19 -4.10 4.60 24.59 0.11 -3.99 16 20 C -0.13 -2.24 10.01 21.22 0.21 -2.03 16 21 C -0.14 -2.26 10.18 21.22 0.22 -2.05 16 22 C -0.21 -3.63 11.23 66.72 0.75 -2.88 16 23 S 0.09 1.97 22.19 -56.49 -1.25 0.72 16 24 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.07 1.65 8.11 -2.39 -0.02 1.63 16 26 H 0.05 1.17 7.99 -2.39 -0.02 1.15 16 27 H 0.10 3.61 8.13 -2.38 -0.02 3.59 16 28 H 0.10 3.60 8.13 -2.39 -0.02 3.58 16 29 H 0.40 19.48 7.90 -92.71 -0.73 18.74 16 30 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 31 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 32 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -69.92 312.77 4.80 -65.12 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.41 Total: 25.76 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 4.81 Total: 8.66 kcal Atomic # 7 Polarization: -77.57 SS G_CDS: -1.34 Total: -78.91 kcal Atomic # 8 Polarization: -65.54 SS G_CDS: 0.15 Total: -65.39 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.25 Total: 0.72 kcal Total: -69.92 4.80 -65.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738793628.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.874 kcal (2) G-P(sol) polarization free energy of solvation -69.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds