Wall clock time and date at job start Tue Mar 31 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47276 * 2 1 4 4 C 1.50701 * 109.46985 * 120.00072 * 2 1 3 5 5 O 1.20828 * 120.00335 * 120.00052 * 4 2 1 6 6 O 1.34231 * 119.99961 * 299.99751 * 4 2 1 7 7 C 1.45200 * 116.99900 * 180.02562 * 6 4 2 8 8 C 1.50702 * 109.46818 * 180.02562 * 7 6 4 9 9 O 1.21291 * 120.00321 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00002 * 179.97438 * 8 7 6 11 11 C 1.37100 * 120.00259 * 179.97438 * 10 8 7 12 12 H 1.07999 * 119.99549 * 0.02562 * 11 10 8 13 13 C 1.38943 * 120.00130 * 180.02562 * 11 10 8 14 14 N 1.31421 * 120.00130 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00195 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47046 * 59.99898 * 15 13 11 17 17 H 1.48499 * 109.47380 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47187 * 300.00211 * 15 13 11 19 19 C 1.50697 * 109.47070 * 239.99752 * 2 1 3 20 20 C 1.38421 * 122.53935 * 119.99754 * 19 2 1 21 21 C 1.33388 * 114.92066 * 179.72463 * 20 19 2 22 22 S 1.75885 * 109.59458 * 0.27968 * 21 20 19 23 23 C 1.33395 * 122.53872 * 300.25814 * 19 2 1 24 24 H 1.09006 * 109.47505 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47012 * 300.00262 * 1 2 3 26 26 H 1.08993 * 109.47394 * 60.00009 * 1 2 3 27 27 H 1.08998 * 109.46770 * 299.99571 * 7 6 4 28 28 H 1.08995 * 109.47470 * 60.00093 * 7 6 4 29 29 H 0.96997 * 120.00039 * 0.02562 * 10 8 7 30 30 H 0.96998 * 119.99659 * 180.02562 * 14 13 11 31 31 H 1.08002 * 122.54201 * 0.02562 * 20 19 2 32 32 H 1.08004 * 125.20514 * 180.24987 * 21 20 19 33 33 H 1.07998 * 125.20353 * 359.97100 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7269 -1.6928 1.1197 6 8 1.7080 -0.2518 2.4496 7 6 2.2276 -0.9857 3.5897 8 6 1.7626 -0.3292 4.8640 9 8 1.0625 0.6601 4.8160 10 7 2.1245 -0.8414 6.0569 11 6 1.7019 -0.2439 7.2162 12 1 1.0786 0.6370 7.1735 13 6 2.0755 -0.7716 8.4460 14 7 2.8344 -1.8433 8.4980 15 14 1.4991 0.0421 10.0256 16 1 0.0148 0.0401 10.0703 17 1 2.0300 -0.7088 11.1916 18 1 1.9937 1.4416 10.0706 19 6 2.0323 -0.7104 -1.2304 20 6 2.8305 -0.0890 -2.1752 21 6 3.1926 -0.8614 -3.2007 22 16 2.5015 -2.4666 -3.0030 23 6 1.7372 -1.9843 -1.4941 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8641 -2.0128 3.5569 28 1 3.3171 -0.9846 3.5566 29 1 2.6847 -1.6324 6.0953 30 1 3.0949 -2.2119 9.3566 31 1 3.1409 0.9416 -2.0863 32 1 3.8146 -0.5487 -4.0265 33 1 1.1264 -2.6232 -0.8735 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738831691.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:15 Heat of formation + Delta-G solvation = -90.917512 kcal Electronic energy + Delta-G solvation = -19119.083846 eV Core-core repulsion = 15850.842177 eV Total energy + Delta-G solvation = -3268.241669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59865 -38.62086 -37.87706 -35.96816 -34.00174 -33.39059 -31.37531 -29.11271 -28.27776 -25.59205 -24.69905 -23.35188 -20.74980 -19.57356 -18.78773 -18.11607 -17.96299 -17.27636 -16.48977 -16.19677 -15.54233 -15.04681 -14.52684 -14.34162 -13.97533 -13.68199 -13.28290 -13.17193 -12.92276 -12.55346 -12.47085 -12.26393 -11.89537 -11.76537 -11.61870 -11.54299 -11.11145 -10.87115 -10.49138 -10.38351 -10.31904 -10.20756 -9.59495 -8.93186 -8.58465 -8.50761 -8.08226 -6.49846 -3.92032 0.86081 1.49754 1.81511 2.33317 2.35596 2.95332 3.15422 3.22746 3.27791 3.74160 4.11685 4.48613 4.58883 4.82088 4.97973 5.02460 5.12244 5.15239 5.20707 5.43397 5.54251 5.62189 5.66021 5.70651 5.86596 6.02674 6.06600 6.18333 6.29746 6.66359 7.47587 7.86948 7.97736 8.48759 9.07037 9.39486 9.89486 10.67351 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.047551 B = 0.002910 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.703758 B = 9620.463329 C = 9934.665903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.020 4.020 3 H 0.118 0.882 4 C 0.460 3.540 5 O -0.506 6.506 6 O -0.323 6.323 7 C 0.060 3.940 8 C 0.439 3.561 9 O -0.576 6.576 10 N -0.553 5.553 11 C -0.303 4.303 12 H 0.106 0.894 13 C 0.025 3.975 14 N -0.898 5.898 15 Si 0.935 3.065 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.099 4.099 20 C -0.122 4.122 21 C -0.218 4.218 22 S 0.095 5.905 23 C -0.173 4.173 24 H 0.060 0.940 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.395 0.605 30 H 0.274 0.726 31 H 0.142 0.858 32 H 0.164 0.836 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.476 -0.278 -21.030 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 H 0.136 0.864 4 C 0.302 3.698 5 O -0.394 6.394 6 O -0.237 6.237 7 C -0.017 4.017 8 C 0.223 3.777 9 O -0.460 6.460 10 N -0.190 5.190 11 C -0.432 4.432 12 H 0.123 0.877 13 C -0.177 4.177 14 N -0.538 5.538 15 Si 0.761 3.239 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.111 4.111 20 C -0.152 4.152 21 C -0.353 4.353 22 S 0.359 5.641 23 C -0.309 4.309 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.228 0.772 30 H 0.084 0.916 31 H 0.160 0.840 32 H 0.182 0.818 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.602 -1.379 -21.748 21.800 hybrid contribution 0.345 0.909 1.738 1.992 sum -0.257 -0.470 -20.010 20.017 Atomic orbital electron populations 1.21811 0.90927 1.03210 1.03953 1.19583 0.98319 0.99929 0.86299 0.86439 1.23589 0.77829 0.83132 0.85275 1.90662 1.35456 1.25857 1.87404 1.86542 1.68688 1.54623 1.13892 1.22740 0.99530 0.95606 0.83836 1.19325 0.86794 0.87635 0.83912 1.90557 1.41353 1.27472 1.86622 1.41703 1.45721 1.27658 1.03934 1.19678 1.29869 1.11493 0.82174 0.87661 1.25312 0.96546 0.96223 0.99658 1.69611 1.35491 1.21443 1.27278 0.85857 0.79106 0.79021 0.79899 1.19750 1.20869 1.19742 1.18379 1.01569 0.94259 0.96937 1.20024 0.99662 1.01459 0.94075 1.25505 1.08460 0.96751 1.04560 1.84231 1.47120 1.13149 1.19606 1.25420 1.06171 0.99025 1.00238 0.92057 0.90072 0.90902 0.89649 0.89620 0.77168 0.91573 0.84033 0.81834 0.81992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.95 37.16 0.33 -1.11 16 2 C -0.02 -0.23 3.08 -92.93 -0.29 -0.52 16 3 H 0.12 1.18 8.03 -51.93 -0.42 0.76 16 4 C 0.46 7.24 7.16 36.01 0.26 7.50 16 5 O -0.51 -8.90 14.99 -18.75 -0.28 -9.18 16 6 O -0.32 -5.97 9.66 -45.91 -0.44 -6.41 16 7 C 0.06 1.16 5.94 36.01 0.21 1.37 16 8 C 0.44 10.59 7.86 -10.98 -0.09 10.51 16 9 O -0.58 -15.95 16.08 -14.11 -0.23 -16.18 16 10 N -0.55 -14.02 5.29 -10.96 -0.06 -14.08 16 11 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 12 H 0.11 3.02 7.16 -52.49 -0.38 2.65 16 13 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 14 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 15 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 C -0.10 -1.13 4.28 -106.25 -0.45 -1.59 16 20 C -0.12 -1.20 9.92 -41.21 -0.41 -1.61 16 21 C -0.22 -1.96 11.23 29.04 0.33 -1.64 16 22 S 0.10 0.92 23.34 -107.50 -2.51 -1.59 16 23 C -0.17 -1.96 9.27 29.04 0.27 -1.69 16 24 H 0.06 0.61 7.73 -51.93 -0.40 0.21 16 25 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.50 8.13 -51.93 -0.42 1.07 16 28 H 0.09 1.52 8.13 -51.93 -0.42 1.09 16 29 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.16 1.80 7.93 -52.49 -0.42 1.38 16 LS Contribution 311.85 15.07 4.70 4.70 Total: -1.00 -32.30 311.85 -6.80 -39.10 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -3.60 Total: 8.10 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.08 Total: 3.28 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.67 Total: -37.49 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.95 Total: -31.78 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.51 Total: -1.59 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.30 -6.80 -39.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738831691.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.819 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds