Wall clock time and date at job start Tue Mar 31 2020 06:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 C 1.50698 * 109.46976 * 239.99738 * 2 1 3 5 5 O 1.20825 * 119.99963 * 239.99632 * 4 2 1 6 6 O 1.34225 * 119.99990 * 60.00192 * 4 2 1 7 7 C 1.45205 * 116.99943 * 179.97438 * 6 4 2 8 8 C 1.50703 * 109.46946 * 180.02562 * 7 6 4 9 9 O 1.21294 * 120.00143 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99642 * 180.02562 * 8 7 6 11 11 C 1.37095 * 119.99896 * 180.02562 * 10 8 7 12 12 H 1.08004 * 120.00215 * 359.97438 * 11 10 8 13 13 C 1.38945 * 120.00368 * 179.97438 * 11 10 8 14 14 N 1.31416 * 119.99712 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00364 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47542 * 89.99786 * 15 13 11 17 17 H 1.48505 * 109.47430 * 209.99875 * 15 13 11 18 18 H 1.48507 * 109.47029 * 329.99659 * 15 13 11 19 19 C 1.50706 * 109.46925 * 119.99737 * 2 1 3 20 20 C 1.38426 * 122.53845 * 239.99761 * 19 2 1 21 21 C 1.33380 * 114.92014 * 179.97438 * 20 19 2 22 22 S 1.75890 * 109.59447 * 0.02562 * 21 20 19 23 23 C 1.33389 * 122.54073 * 59.71263 * 19 2 1 24 24 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47059 * 299.99766 * 1 2 3 26 26 H 1.08992 * 109.47060 * 60.00250 * 1 2 3 27 27 H 1.08994 * 109.47081 * 299.99665 * 7 6 4 28 28 H 1.08993 * 109.47243 * 59.99977 * 7 6 4 29 29 H 0.96994 * 120.00437 * 359.97438 * 10 8 7 30 30 H 0.97007 * 119.99652 * 179.97438 * 14 13 11 31 31 H 1.08005 * 122.53554 * 359.96386 * 20 19 2 32 32 H 1.08002 * 125.20639 * 179.97438 * 21 20 19 33 33 H 1.08001 * 125.19982 * 0.02562 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7270 -1.6928 -1.1195 6 8 1.7081 -0.2519 -2.4495 7 6 2.2277 -0.9859 -3.5896 8 6 1.7637 -0.3287 -4.8639 9 8 1.0635 0.6606 -4.8160 10 7 2.1258 -0.8409 -6.0568 11 6 1.7042 -0.2428 -7.2161 12 1 1.0814 0.6386 -7.1735 13 6 2.0780 -0.7704 -8.4459 14 7 2.8361 -1.8426 -8.4978 15 14 1.5028 0.0441 -10.0255 16 1 2.4935 1.0683 -10.4435 17 1 1.3711 -0.9812 -11.0917 18 1 0.1865 0.6927 -9.7972 19 6 2.0323 -0.7104 1.2306 20 6 2.8306 -0.0889 2.1753 21 6 3.1875 -0.8592 3.2040 22 16 2.4981 -2.4652 3.0053 23 6 1.7368 -1.9840 1.4947 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 3.3171 -0.9847 -3.5565 28 1 1.8643 -2.0129 -3.5568 29 1 2.6854 -1.6322 -6.0951 30 1 3.0968 -2.2112 -9.3564 31 1 3.1412 0.9417 2.0861 32 1 3.8059 -0.5453 4.0320 33 1 1.1255 -2.6228 0.8744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738831693.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:19 Heat of formation + Delta-G solvation = -90.961887 kcal Electronic energy + Delta-G solvation = -19118.879528 eV Core-core repulsion = 15850.635935 eV Total energy + Delta-G solvation = -3268.243593 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59923 -38.62158 -37.87831 -35.96901 -34.00316 -33.39067 -31.37618 -29.11373 -28.27874 -25.59272 -24.70002 -23.35175 -20.75005 -19.57506 -18.78802 -18.11670 -17.96360 -17.27693 -16.49048 -16.19782 -15.54311 -15.04818 -14.52823 -14.34188 -13.97075 -13.68310 -13.28202 -13.17515 -12.92318 -12.55538 -12.47075 -12.26447 -11.89627 -11.76571 -11.62165 -11.54336 -11.13341 -10.87169 -10.44379 -10.38437 -10.32305 -10.20846 -9.60563 -8.93284 -8.58510 -8.50828 -8.08331 -6.50053 -3.92116 0.86092 1.49701 1.81448 2.33342 2.35644 2.95272 3.13194 3.23411 3.29749 3.74002 4.11643 4.48599 4.58842 4.82025 4.97912 5.02404 5.12196 5.15176 5.20659 5.43338 5.54200 5.62103 5.66046 5.70577 5.86585 6.02622 6.06525 6.18282 6.29718 6.66322 7.47675 7.86991 7.97784 8.48624 9.07059 9.39456 9.89382 10.67211 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.047588 B = 0.002909 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.237726 B = 9622.491589 C = 9936.287309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.020 4.020 3 H 0.118 0.882 4 C 0.460 3.540 5 O -0.506 6.506 6 O -0.323 6.323 7 C 0.060 3.940 8 C 0.439 3.561 9 O -0.576 6.576 10 N -0.553 5.553 11 C -0.302 4.302 12 H 0.106 0.894 13 C 0.025 3.975 14 N -0.897 5.897 15 Si 0.934 3.066 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.268 1.268 19 C -0.099 4.099 20 C -0.122 4.122 21 C -0.218 4.218 22 S 0.095 5.905 23 C -0.173 4.173 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.395 0.605 30 H 0.274 0.726 31 H 0.142 0.858 32 H 0.164 0.836 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.504 -0.270 21.053 21.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 H 0.136 0.864 4 C 0.302 3.698 5 O -0.394 6.394 6 O -0.237 6.237 7 C -0.017 4.017 8 C 0.224 3.776 9 O -0.460 6.460 10 N -0.190 5.190 11 C -0.431 4.431 12 H 0.124 0.876 13 C -0.178 4.178 14 N -0.538 5.538 15 Si 0.760 3.240 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.193 1.193 19 C -0.111 4.111 20 C -0.152 4.152 21 C -0.353 4.353 22 S 0.359 5.641 23 C -0.309 4.309 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.228 0.772 30 H 0.084 0.916 31 H 0.160 0.840 32 H 0.182 0.818 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.640 -1.369 21.775 21.827 hybrid contribution 0.364 0.905 -1.744 1.998 sum -0.276 -0.464 20.031 20.038 Atomic orbital electron populations 1.21811 0.90926 1.03209 1.03952 1.19587 0.98319 0.99930 0.86299 0.86439 1.23586 0.77831 0.83133 0.85274 1.90661 1.35455 1.25861 1.87402 1.86542 1.68689 1.54623 1.13893 1.22741 0.99536 0.95603 0.83837 1.19326 0.86783 0.87628 0.83913 1.90559 1.41321 1.27485 1.86624 1.41708 1.45773 1.27619 1.03944 1.19725 1.29836 1.11421 0.82160 0.87612 1.25313 0.96577 0.96219 0.99666 1.69620 1.35587 1.21428 1.27167 0.85799 0.79331 0.78549 0.80274 1.20260 1.20813 1.19265 1.18381 1.01546 0.94267 0.96953 1.20024 0.99686 1.01475 0.94029 1.25503 1.08527 0.96765 1.04481 1.84231 1.47332 1.13106 1.19440 1.25417 1.06155 0.99026 1.00256 0.92059 0.90907 0.90066 0.89626 0.89639 0.77171 0.91632 0.84032 0.81834 0.81993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.95 37.16 0.33 -1.11 16 2 C -0.02 -0.23 3.08 -92.92 -0.29 -0.52 16 3 H 0.12 1.18 8.03 -51.93 -0.42 0.76 16 4 C 0.46 7.24 7.16 36.00 0.26 7.50 16 5 O -0.51 -8.90 14.99 -18.75 -0.28 -9.18 16 6 O -0.32 -5.97 9.66 -45.89 -0.44 -6.41 16 7 C 0.06 1.16 5.94 36.01 0.21 1.37 16 8 C 0.44 10.59 7.86 -10.98 -0.09 10.50 16 9 O -0.58 -15.95 16.08 -14.11 -0.23 -16.18 16 10 N -0.55 -14.02 5.29 -10.96 -0.06 -14.08 16 11 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 12 H 0.11 3.04 7.16 -52.48 -0.38 2.67 16 13 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 14 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 15 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 C -0.10 -1.13 4.28 -106.24 -0.45 -1.59 16 20 C -0.12 -1.20 9.92 -41.21 -0.41 -1.61 16 21 C -0.22 -1.96 11.23 29.03 0.33 -1.63 16 22 S 0.10 0.92 23.34 -107.50 -2.51 -1.59 16 23 C -0.17 -1.96 9.27 29.04 0.27 -1.69 16 24 H 0.06 0.61 7.73 -51.93 -0.40 0.21 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 27 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 28 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 29 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 32 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.16 1.80 7.93 -52.49 -0.42 1.38 16 LS Contribution 311.85 15.07 4.70 4.70 Total: -1.00 -32.32 311.85 -6.80 -39.12 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -3.60 Total: 8.06 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -0.08 Total: 3.29 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.67 Total: -37.48 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.95 Total: -31.77 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.51 Total: -1.59 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.32 -6.80 -39.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738831693.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.846 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds