Wall clock time and date at job start Tue Mar 31 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99641 * 2 1 4 4 H 1.48504 * 109.46755 * 239.99601 * 3 2 1 5 5 H 1.48493 * 109.47599 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47055 * 119.99847 * 3 2 1 7 7 C 1.37874 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00157 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47286 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47510 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47415 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99760 * 180.02562 * 12 11 10 14 14 O 1.21611 * 120.00152 * 359.97438 * 13 12 11 15 15 C 1.47202 * 119.99422 * 179.97438 * 13 12 11 16 16 C 1.36635 * 125.15348 * 179.97438 * 15 13 12 17 17 C 1.36775 * 114.74937 * 179.97438 * 16 15 13 18 18 C 1.36680 * 114.73541 * 359.97438 * 17 16 15 19 19 C 1.47016 * 125.16225 * 179.97438 * 18 17 16 20 20 O 1.21543 * 119.99843 * 0.02562 * 19 18 17 21 21 O 1.34821 * 119.99657 * 179.97438 * 19 18 17 22 22 S 1.75833 * 125.16140 * 359.95846 * 15 13 12 23 23 H 0.96993 * 119.99564 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47002 * 60.00206 * 9 7 2 25 25 H 1.09004 * 109.47457 * 300.00426 * 9 7 2 26 26 H 1.09000 * 109.47017 * 60.00689 * 10 9 7 27 27 H 1.09000 * 109.47473 * 300.00144 * 10 9 7 28 28 H 1.09000 * 109.47173 * 59.99303 * 11 10 9 29 29 H 1.09004 * 109.47046 * 300.00415 * 11 10 9 30 30 H 0.96994 * 120.00123 * 359.97438 * 12 11 10 31 31 H 1.07998 * 122.62516 * 0.22983 * 16 15 13 32 32 H 1.08000 * 122.63005 * 180.02562 * 17 16 15 33 33 H 0.96703 * 117.00106 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4805 -4.9871 0.0020 12 7 2.4325 -6.1005 0.0024 13 6 1.9831 -7.3713 0.0024 14 8 0.7875 -7.5935 0.0025 15 6 2.9398 -8.4900 0.0022 16 6 2.6020 -9.8140 0.0026 17 6 3.6640 -10.6759 0.0018 18 6 4.8903 -10.0724 0.0000 19 6 6.1807 -10.7770 -0.0006 20 8 6.2096 -11.9921 -0.0001 21 8 7.3319 -10.0752 -0.0029 22 16 4.6904 -8.3254 0.0009 23 1 -0.4849 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8881 25 1 0.6248 -2.5563 0.8919 26 1 2.8726 -3.6039 0.8910 27 1 2.8714 -3.6047 -0.8890 28 1 0.8533 -5.0449 -0.8876 29 1 0.8541 -5.0447 0.8923 30 1 3.3861 -5.9233 0.0019 31 1 1.5767 -10.1533 -0.0005 32 1 3.5430 -11.7491 0.0016 33 1 8.1552 -10.5824 -0.0029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739070335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:47 Heat of formation + Delta-G solvation = -108.464897 kcal Electronic energy + Delta-G solvation = -18293.509069 eV Core-core repulsion = 15024.506488 eV Total energy + Delta-G solvation = -3269.002581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.57993 -39.80348 -37.70827 -36.47333 -35.54500 -33.43780 -31.57263 -30.50881 -27.41649 -25.98781 -23.47547 -22.80088 -21.35008 -20.72857 -19.33269 -19.19156 -18.16189 -16.74978 -16.52438 -16.18138 -16.15758 -15.54050 -15.38587 -14.54096 -14.46589 -14.16558 -13.75864 -13.46180 -13.09459 -12.76171 -12.33230 -12.08198 -11.92823 -11.82402 -11.55930 -11.21250 -10.92206 -10.81891 -10.67329 -10.26293 -9.94176 -9.49696 -9.43803 -9.18719 -9.11006 -8.97044 -8.40546 -6.05327 -4.08803 -0.42848 0.83474 1.26233 1.53269 2.37884 2.43333 2.99871 3.04214 3.29822 3.34911 3.36668 4.41100 4.52325 4.65454 4.72132 4.88873 5.30493 5.44912 5.51056 5.66254 5.66490 5.78552 5.90911 6.05034 6.24128 6.49769 6.69169 6.91027 7.32137 7.40090 7.58278 7.70117 7.92606 8.03915 8.33504 8.97511 9.55656 11.05908 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.030411 B = 0.002763 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.495053 B =10131.295119 C =11026.041348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.717 5.717 13 C 0.578 3.422 14 O -0.521 6.521 15 C -0.215 4.215 16 C -0.085 4.085 17 C -0.050 4.050 18 C -0.243 4.243 19 C 0.560 3.440 20 O -0.502 6.502 21 O -0.510 6.510 22 S 0.243 5.757 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.396 0.604 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.487 -20.908 0.000 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.367 5.367 13 C 0.362 3.638 14 O -0.398 6.398 15 C -0.338 4.338 16 C -0.117 4.117 17 C -0.085 4.085 18 C -0.363 4.363 19 C 0.402 3.598 20 O -0.392 6.392 21 O -0.323 6.323 22 S 0.513 5.487 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.230 0.770 31 H 0.182 0.818 32 H 0.179 0.821 33 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 12.131 -19.721 0.000 23.153 hybrid contribution 0.535 -0.515 0.000 0.743 sum 12.666 -20.236 0.000 23.873 Atomic orbital electron populations 1.69953 1.06068 1.26875 1.50351 1.25027 0.94864 0.99322 0.95201 0.86633 0.79561 0.83041 0.78610 1.20225 1.21255 1.20220 1.21152 0.92973 0.90908 1.51238 0.92655 1.19022 0.93791 0.90740 0.97748 1.21924 0.99892 0.93141 1.01091 1.21784 0.91666 0.84612 1.02570 1.46156 1.10930 1.05644 1.74005 1.17072 0.87212 0.81918 0.77582 1.90839 1.15079 1.84281 1.49628 1.25384 0.97835 0.98745 1.11808 1.20560 1.01537 0.90040 0.99539 1.20596 0.88960 1.02296 0.96608 1.23672 0.94728 0.98214 1.19684 1.19383 0.83276 0.84774 0.72345 1.90946 1.87716 1.14295 1.46212 1.84576 1.17075 1.44735 1.85881 1.84351 0.97994 1.00654 1.65681 0.92819 0.96191 0.96188 0.92544 0.92547 0.91149 0.91157 0.76962 0.81833 0.82082 0.71969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 11 C 0.12 1.92 5.67 -4.04 -0.02 1.90 16 12 N -0.72 -9.86 5.55 -61.46 -0.34 -10.20 16 13 C 0.58 8.26 7.80 -12.62 -0.10 8.17 16 14 O -0.52 -9.24 16.82 5.27 0.09 -9.15 16 15 C -0.22 -2.39 6.46 -36.52 -0.24 -2.62 16 16 C -0.08 -0.82 9.88 -40.69 -0.40 -1.22 16 17 C -0.05 -0.43 9.88 -40.67 -0.40 -0.84 16 18 C -0.24 -2.22 6.46 -36.59 -0.24 -2.46 16 19 C 0.56 5.06 8.32 34.29 0.29 5.34 16 20 O -0.50 -5.72 17.60 -19.30 -0.34 -6.06 16 21 O -0.51 -3.21 13.28 -40.82 -0.54 -3.75 16 22 S 0.24 2.14 22.17 -107.50 -2.38 -0.24 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.40 4.47 7.58 -40.82 -0.31 4.16 16 31 H 0.16 1.45 8.04 -52.49 -0.42 1.03 16 32 H 0.16 1.13 8.04 -52.49 -0.42 0.71 16 33 H 0.42 0.65 9.11 45.56 0.42 1.07 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -33.76 316.52 -7.65 -41.41 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -2.82 Total: -0.41 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.80 Total: -6.82 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.40 Total: -35.89 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.79 Total: -18.96 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -2.38 Total: -0.24 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.76 -7.65 -41.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739070335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.053 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds