Wall clock time and date at job start Tue Mar 31 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 120.00096 * 2 1 4 4 H 1.48503 * 109.47138 * 275.98918 * 3 2 1 5 5 H 1.48497 * 109.47278 * 35.99157 * 3 2 1 6 6 H 1.48507 * 109.46962 * 155.99204 * 3 2 1 7 7 C 1.38950 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99781 * 338.60971 * 7 2 1 9 9 N 1.37092 * 120.00563 * 158.60125 * 7 2 1 10 10 C 1.46505 * 119.99938 * 322.20914 * 9 7 2 11 11 C 1.50694 * 109.46984 * 263.23622 * 10 9 7 12 12 O 1.20827 * 120.00251 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99992 * 179.97438 * 11 10 9 14 14 C 1.34774 * 120.00411 * 142.19938 * 9 7 2 15 15 O 1.21294 * 119.99838 * 0.02562 * 14 9 7 16 16 C 1.50703 * 120.00406 * 180.02562 * 14 9 7 17 17 C 1.52991 * 109.47233 * 180.02562 * 16 14 9 18 18 C 1.50701 * 109.47221 * 180.02562 * 17 16 14 19 19 C 1.33385 * 125.20551 * 89.99692 * 18 17 16 20 20 C 1.38421 * 114.92407 * 179.97438 * 19 18 17 21 21 C 1.33392 * 114.92023 * 359.97438 * 20 19 18 22 22 S 1.75883 * 109.59162 * 359.76156 * 21 20 19 23 23 H 0.96998 * 119.99806 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46922 * 23.23621 * 10 9 7 25 25 H 1.08997 * 109.46972 * 143.22911 * 10 9 7 26 26 H 0.96699 * 117.00302 * 179.97438 * 13 11 10 27 27 H 1.09007 * 109.46390 * 60.00723 * 16 14 9 28 28 H 1.08998 * 109.47048 * 300.01345 * 16 14 9 29 29 H 1.08999 * 109.47245 * 60.00444 * 17 16 14 30 30 H 1.09002 * 109.47281 * 300.00019 * 17 16 14 31 31 H 1.08007 * 122.53946 * 359.96402 * 19 18 17 32 32 H 1.08005 * 122.54379 * 180.02562 * 20 19 18 33 33 H 1.08005 * 125.20244 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3691 2.1194 -1.3925 5 1 1.5146 2.6128 0.8228 6 1 3.6033 1.4068 0.5697 7 6 2.0088 -1.2033 0.0005 8 1 1.5246 -2.1063 0.3421 9 7 3.3089 -1.2446 -0.4326 10 6 3.7280 -0.4235 -1.5712 11 6 3.7007 -1.2554 -2.8274 12 8 3.3661 -2.4153 -2.7768 13 8 4.0483 -0.7079 -4.0027 14 6 4.2015 -2.0403 0.1891 15 8 3.8544 -2.7203 1.1316 16 6 5.6307 -2.0852 -0.2867 17 6 6.4275 -3.0594 0.5832 18 6 7.8568 -3.1038 0.1079 19 6 8.8378 -2.3131 0.5457 20 6 10.0727 -2.5380 -0.0377 21 6 10.0948 -3.5118 -0.9491 22 16 8.4887 -4.2121 -1.1030 23 1 -0.4850 0.8400 -0.0004 24 1 3.0478 0.4212 -1.6800 25 1 4.7398 -0.0555 -1.4009 26 1 4.0155 -1.2810 -4.7808 27 1 6.0694 -1.0900 -0.2134 28 1 5.6580 -2.4188 -1.3240 29 1 5.9887 -4.0545 0.5097 30 1 6.4002 -2.7260 1.6207 31 1 8.6804 -1.5547 1.2984 32 1 10.9520 -1.9688 0.2256 33 1 10.9665 -3.8254 -1.5043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077111.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:01 Heat of formation + Delta-G solvation = -79.956317 kcal Electronic energy + Delta-G solvation = -19985.165607 eV Core-core repulsion = 16717.399251 eV Total energy + Delta-G solvation = -3267.766356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05493 -38.70982 -37.82151 -35.79091 -34.93634 -33.36604 -32.15191 -28.84333 -28.06280 -25.80855 -24.03631 -22.25915 -21.73639 -19.22755 -18.82629 -17.80047 -17.37806 -17.22288 -16.40627 -15.92367 -15.58456 -15.29411 -14.99223 -14.69932 -13.94772 -13.33945 -13.09438 -12.91486 -12.77769 -12.54486 -12.49354 -12.23043 -11.94502 -11.75928 -11.53210 -11.17440 -11.00473 -10.85765 -10.68880 -10.54607 -10.15839 -10.01583 -9.21680 -8.81954 -8.52972 -8.48243 -7.97065 -6.47722 -4.07695 0.99000 1.63278 2.01427 2.63437 2.72828 2.91958 3.09038 3.14597 3.21040 3.76306 4.02161 4.24493 4.77154 4.96551 5.02559 5.22339 5.30566 5.36236 5.43769 5.54152 5.59717 5.66327 5.77436 5.89740 5.98892 6.20641 6.30470 6.32748 6.53015 6.83710 7.39611 8.17113 8.28522 8.38561 8.84251 9.18107 9.58897 10.64181 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.021561 B = 0.005122 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.346006 B = 5465.728995 C = 5832.073056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.059 3.941 3 Si 0.861 3.139 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.315 4.315 8 H 0.109 0.891 9 N -0.453 5.453 10 C 0.098 3.902 11 C 0.456 3.544 12 O -0.493 6.493 13 O -0.525 6.525 14 C 0.483 3.517 15 O -0.548 6.548 16 C -0.137 4.137 17 C -0.033 4.033 18 C -0.157 4.157 19 C -0.149 4.149 20 C -0.130 4.130 21 C -0.226 4.226 22 S 0.093 5.907 23 H 0.276 0.724 24 H 0.114 0.886 25 H 0.105 0.895 26 H 0.401 0.599 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.770 -0.174 -5.355 18.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.147 4.147 3 Si 0.687 3.313 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.442 4.442 8 H 0.126 0.874 9 N -0.175 5.175 10 C -0.028 4.028 11 C 0.295 3.705 12 O -0.379 6.379 13 O -0.337 6.337 14 C 0.272 3.728 15 O -0.428 6.428 16 C -0.178 4.178 17 C -0.073 4.073 18 C -0.275 4.275 19 C -0.179 4.179 20 C -0.161 4.161 21 C -0.361 4.361 22 S 0.356 5.644 23 H 0.086 0.914 24 H 0.132 0.868 25 H 0.123 0.877 26 H 0.259 0.741 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 16.695 -1.676 -5.354 17.612 hybrid contribution 0.919 1.788 0.017 2.010 sum 17.614 0.112 -5.337 18.405 Atomic orbital electron populations 1.69750 1.06168 1.28034 1.45282 1.25392 0.95231 0.98145 0.95967 0.87179 0.81663 0.84166 0.78291 1.19788 1.20562 1.18200 1.19065 0.84705 0.96903 1.43495 0.87380 1.43392 1.10291 1.40530 1.23297 1.21628 1.03287 0.94700 0.83222 1.24647 0.73031 0.87701 0.85090 1.90719 1.42336 1.18425 1.86381 1.84578 1.81566 1.48881 1.18688 1.20155 0.86091 0.82855 0.83686 1.90576 1.79965 1.43163 1.29086 1.21722 0.94451 1.00806 1.00781 1.19889 0.86422 1.01003 0.99949 1.24710 1.00336 1.00617 1.01804 1.20164 0.92023 1.02204 1.03526 1.20153 0.98619 0.99307 0.98031 1.25571 1.00692 1.03700 1.06158 1.84413 1.02160 1.37288 1.40555 0.91385 0.86826 0.87749 0.74081 0.89587 0.90150 0.89885 0.88953 0.84203 0.84562 0.82236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.41 13.96 55.50 0.77 -23.63 16 2 C 0.06 1.59 5.28 -17.47 -0.09 1.50 16 3 Si 0.86 19.12 24.97 -169.99 -4.25 14.87 16 4 H -0.27 -5.53 6.72 56.52 0.38 -5.15 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.31 -8.85 9.36 -14.94 -0.14 -8.99 16 8 H 0.11 3.47 7.92 -52.48 -0.42 3.06 16 9 N -0.45 -10.85 1.74 -116.10 -0.20 -11.05 16 10 C 0.10 1.92 4.33 -5.19 -0.02 1.90 16 11 C 0.46 8.54 7.63 36.00 0.27 8.81 16 12 O -0.49 -10.95 17.00 -18.75 -0.32 -11.27 16 13 O -0.53 -7.46 13.42 -39.26 -0.53 -7.99 16 14 C 0.48 11.08 7.37 -10.99 -0.08 11.00 16 15 O -0.55 -14.49 15.85 5.55 0.09 -14.40 16 16 C -0.14 -2.33 4.30 -27.89 -0.12 -2.45 16 17 C -0.03 -0.51 5.00 -27.89 -0.14 -0.65 16 18 C -0.16 -2.11 5.76 -36.00 -0.21 -2.32 16 19 C -0.15 -1.78 10.05 -41.21 -0.41 -2.19 16 20 C -0.13 -1.36 10.18 -41.21 -0.42 -1.78 16 21 C -0.23 -2.34 11.23 29.04 0.33 -2.01 16 22 S 0.09 1.13 23.33 -107.50 -2.51 -1.38 16 23 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.11 2.31 3.62 -51.93 -0.19 2.12 16 25 H 0.10 1.63 6.73 -51.93 -0.35 1.28 16 26 H 0.40 3.85 9.10 45.56 0.41 4.26 16 27 H 0.09 1.26 7.42 -51.93 -0.39 0.88 16 28 H 0.08 1.34 7.43 -51.93 -0.39 0.95 16 29 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 30 H 0.09 1.44 8.10 -51.93 -0.42 1.02 16 31 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.16 1.25 8.06 -52.48 -0.42 0.82 16 LS Contribution 302.59 15.07 4.56 4.56 Total: -1.00 -33.63 302.59 -5.99 -39.62 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -2.58 Total: 7.86 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.04 Total: 2.81 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.57 Total: -34.68 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.76 Total: -33.66 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.25 Total: 14.87 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.51 Total: -1.38 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.63 -5.99 -39.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077111.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.333 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds