Wall clock time and date at job start Tue Mar 31 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86798 * 120.00096 * 2 1 4 4 H 1.48503 * 109.47138 * 275.98918 * 3 2 1 5 5 H 1.48497 * 109.47278 * 35.99157 * 3 2 1 6 6 H 1.48507 * 109.46962 * 155.99204 * 3 2 1 7 7 C 1.38950 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99781 * 338.60971 * 7 2 1 9 9 N 1.37092 * 120.00563 * 158.60125 * 7 2 1 10 10 C 1.46505 * 119.99938 * 322.20914 * 9 7 2 11 11 C 1.50694 * 109.46984 * 263.23622 * 10 9 7 12 12 O 1.20827 * 120.00251 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99992 * 179.97438 * 11 10 9 14 14 C 1.34774 * 120.00411 * 142.19938 * 9 7 2 15 15 O 1.21294 * 119.99838 * 0.02562 * 14 9 7 16 16 C 1.50703 * 120.00406 * 180.02562 * 14 9 7 17 17 C 1.52991 * 109.47233 * 180.02562 * 16 14 9 18 18 C 1.50701 * 109.47221 * 180.02562 * 17 16 14 19 19 C 1.33385 * 125.20551 * 89.99692 * 18 17 16 20 20 C 1.38421 * 114.92407 * 179.97438 * 19 18 17 21 21 C 1.33392 * 114.92023 * 359.97438 * 20 19 18 22 22 S 1.75883 * 109.59162 * 359.76156 * 21 20 19 23 23 H 0.96998 * 119.99806 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46922 * 23.23621 * 10 9 7 25 25 H 1.08997 * 109.46972 * 143.22911 * 10 9 7 26 26 H 0.96699 * 117.00302 * 179.97438 * 13 11 10 27 27 H 1.09007 * 109.46390 * 60.00723 * 16 14 9 28 28 H 1.08998 * 109.47048 * 300.01345 * 16 14 9 29 29 H 1.08999 * 109.47245 * 60.00444 * 17 16 14 30 30 H 1.09002 * 109.47281 * 300.00019 * 17 16 14 31 31 H 1.08007 * 122.53946 * 359.96402 * 19 18 17 32 32 H 1.08005 * 122.54379 * 180.02562 * 20 19 18 33 33 H 1.08005 * 125.20244 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3691 2.1194 -1.3925 5 1 1.5146 2.6128 0.8228 6 1 3.6033 1.4068 0.5697 7 6 2.0088 -1.2033 0.0005 8 1 1.5246 -2.1063 0.3421 9 7 3.3089 -1.2446 -0.4326 10 6 3.7280 -0.4235 -1.5712 11 6 3.7007 -1.2554 -2.8274 12 8 3.3661 -2.4153 -2.7768 13 8 4.0483 -0.7079 -4.0027 14 6 4.2015 -2.0403 0.1891 15 8 3.8544 -2.7203 1.1316 16 6 5.6307 -2.0852 -0.2867 17 6 6.4275 -3.0594 0.5832 18 6 7.8568 -3.1038 0.1079 19 6 8.8378 -2.3131 0.5457 20 6 10.0727 -2.5380 -0.0377 21 6 10.0948 -3.5118 -0.9491 22 16 8.4887 -4.2121 -1.1030 23 1 -0.4850 0.8400 -0.0004 24 1 3.0478 0.4212 -1.6800 25 1 4.7398 -0.0555 -1.4009 26 1 4.0155 -1.2810 -4.7808 27 1 6.0694 -1.0900 -0.2134 28 1 5.6580 -2.4188 -1.3240 29 1 5.9887 -4.0545 0.5097 30 1 6.4002 -2.7260 1.6207 31 1 8.6804 -1.5547 1.2984 32 1 10.9520 -1.9688 0.2256 33 1 10.9665 -3.8254 -1.5043 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077111.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:00 Heat of formation + Delta-G solvation = -104.100078 kcal Electronic energy + Delta-G solvation = -19986.212559 eV Core-core repulsion = 16717.399251 eV Total energy + Delta-G solvation = -3268.813308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61380 -40.32265 -38.77769 -37.26717 -36.67515 -34.70481 -34.10821 -30.07985 -29.65301 -27.36685 -25.40256 -23.44954 -23.16022 -20.60183 -20.08129 -19.23580 -19.20395 -18.52363 -17.86450 -17.35682 -17.10346 -16.59906 -16.41349 -16.05457 -15.65901 -14.87981 -14.50431 -14.36263 -14.12731 -14.00278 -13.71832 -13.51274 -13.17180 -12.99760 -12.85100 -12.77488 -12.56858 -12.33897 -11.99800 -11.94087 -11.70243 -11.56198 -11.11782 -10.55516 -9.92688 -9.53393 -9.39081 -8.53608 -6.21783 0.11193 0.73941 1.15124 1.16422 1.19742 1.34403 1.47773 1.64112 1.89259 2.09151 2.18478 2.60222 2.96233 3.55835 3.89297 3.94927 4.04148 4.13577 4.17388 4.31165 4.42639 4.55438 4.65459 4.75994 4.90154 5.07149 5.28830 5.43710 5.45222 5.60387 5.65447 6.00686 6.41637 6.84832 6.99237 7.17055 7.71415 8.63902 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.021561 B = 0.005122 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.346006 B = 5465.728995 C = 5832.073056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.008 3.992 3 Si 0.936 3.064 4 H -0.230 1.230 5 H -0.282 1.282 6 H -0.237 1.237 7 C -0.338 4.338 8 H 0.037 0.963 9 N -0.464 5.464 10 C 0.089 3.911 11 C 0.467 3.533 12 O -0.539 6.539 13 O -0.503 6.503 14 C 0.472 3.528 15 O -0.600 6.600 16 C -0.121 4.121 17 C -0.025 4.025 18 C -0.184 4.184 19 C -0.137 4.137 20 C -0.137 4.137 21 C -0.210 4.210 22 S 0.064 5.936 23 H 0.283 0.717 24 H 0.113 0.887 25 H 0.157 0.843 26 H 0.426 0.574 27 H 0.123 0.877 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.167 0.833 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.817 2.683 -6.976 23.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.756 3.244 4 H -0.154 1.154 5 H -0.208 1.208 6 H -0.160 1.160 7 C -0.466 4.466 8 H 0.055 0.945 9 N -0.186 5.186 10 C -0.036 4.036 11 C 0.309 3.691 12 O -0.429 6.429 13 O -0.316 6.316 14 C 0.264 3.736 15 O -0.483 6.483 16 C -0.161 4.161 17 C -0.065 4.065 18 C -0.301 4.301 19 C -0.167 4.167 20 C -0.167 4.167 21 C -0.345 4.345 22 S 0.327 5.673 23 H 0.092 0.908 24 H 0.130 0.870 25 H 0.174 0.826 26 H 0.288 0.712 27 H 0.141 0.859 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.171 0.829 32 H 0.184 0.816 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 20.765 1.191 -7.044 21.960 hybrid contribution -0.334 0.801 0.462 0.984 sum 20.432 1.992 -6.581 21.558 Atomic orbital electron populations 1.69885 1.08470 1.29718 1.46520 1.26306 0.96007 1.02509 0.94563 0.86010 0.80500 0.77267 0.80600 1.15402 1.20833 1.15973 1.18572 0.86894 0.95339 1.45796 0.94516 1.43406 1.08754 1.41381 1.25035 1.21825 1.05848 0.93733 0.82178 1.24281 0.72072 0.86672 0.86124 1.90732 1.44559 1.20399 1.87168 1.84482 1.80280 1.48583 1.18241 1.21263 0.88253 0.81303 0.82821 1.90538 1.81329 1.45009 1.31447 1.21684 0.90155 1.03322 1.00974 1.19663 0.87976 0.99267 0.99557 1.24399 0.99313 1.02634 1.03782 1.20465 0.92103 1.01382 1.02797 1.20449 0.98948 0.99577 0.97704 1.25944 1.00075 1.02703 1.05767 1.84542 1.04215 1.37907 1.40662 0.90777 0.86956 0.82584 0.71209 0.85894 0.89365 0.92370 0.89550 0.82853 0.81611 0.79470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.95 13.96 21.66 0.30 -53.65 16 2 C 0.01 0.47 5.28 84.93 0.45 0.92 16 3 Si 0.94 38.15 24.97 68.60 1.71 39.87 16 4 H -0.23 -7.88 6.72 99.48 0.67 -7.21 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.24 -8.82 7.11 99.48 0.71 -8.11 16 7 C -0.34 -20.10 9.36 84.04 0.79 -19.32 16 8 H 0.04 2.62 7.92 -2.91 -0.02 2.60 16 9 N -0.46 -22.43 1.74 -639.60 -1.11 -23.55 16 10 C 0.09 3.24 4.33 85.63 0.37 3.61 16 11 C 0.47 16.48 7.63 71.23 0.54 17.02 16 12 O -0.54 -23.98 17.00 21.96 0.37 -23.61 16 13 O -0.50 -12.24 13.42 -51.41 -0.69 -12.93 16 14 C 0.47 22.12 7.37 87.66 0.65 22.77 16 15 O -0.60 -33.73 15.85 -3.07 -0.05 -33.78 16 16 C -0.12 -3.96 4.30 29.85 0.13 -3.83 16 17 C -0.02 -0.77 5.00 29.85 0.15 -0.63 16 18 C -0.18 -4.62 5.76 24.59 0.14 -4.48 16 19 C -0.14 -2.81 10.05 21.21 0.21 -2.60 16 20 C -0.14 -2.28 10.18 21.22 0.22 -2.06 16 21 C -0.21 -3.55 11.23 66.72 0.75 -2.81 16 22 S 0.06 1.45 23.33 -56.49 -1.32 0.13 16 23 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 24 H 0.11 4.14 3.62 -2.39 -0.01 4.14 16 25 H 0.16 4.01 6.73 -2.39 -0.02 3.99 16 26 H 0.43 6.50 9.10 -74.06 -0.67 5.83 16 27 H 0.12 3.10 7.42 -2.38 -0.02 3.08 16 28 H 0.09 2.79 7.43 -2.39 -0.02 2.77 16 29 H 0.06 2.05 8.10 -2.39 -0.02 2.03 16 30 H 0.09 2.72 8.10 -2.39 -0.02 2.70 16 31 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.19 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -81.16 302.59 4.06 -77.10 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.45 Total: 21.81 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 4.39 Total: 8.60 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -0.81 Total: -77.19 kcal Atomic # 8 Polarization: -69.95 SS G_CDS: -0.37 Total: -70.32 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.71 Total: 39.87 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -1.32 Total: 0.13 kcal Total: -81.16 4.06 -77.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077111.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.002 kcal (2) G-P(sol) polarization free energy of solvation -81.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds