Wall clock time and date at job start Tue Mar 31 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31360 * 1 3 3 Si 1.86797 * 120.00227 * 2 1 4 4 H 1.48503 * 109.47328 * 270.00377 * 3 2 1 5 5 H 1.48501 * 109.47054 * 30.00379 * 3 2 1 6 6 H 1.48501 * 109.47179 * 150.00283 * 3 2 1 7 7 C 1.39048 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00607 * 198.41770 * 7 2 1 9 9 N 1.36877 * 120.00203 * 18.41786 * 7 2 1 10 10 C 1.46506 * 119.99385 * 39.38622 * 9 7 2 11 11 C 1.50695 * 109.47153 * 95.71290 * 10 9 7 12 12 O 1.20823 * 120.00395 * 359.97438 * 11 10 9 13 13 O 1.34225 * 120.00076 * 179.97438 * 11 10 9 14 14 C 1.34769 * 120.00449 * 219.38830 * 9 7 2 15 15 O 1.21595 * 120.00248 * 184.59686 * 14 9 7 16 16 C 1.47729 * 119.99837 * 4.58967 * 14 9 7 17 17 C 1.39662 * 120.14453 * 22.66471 * 16 14 9 18 18 C 1.37923 * 119.87738 * 179.74372 * 17 16 14 19 19 C 1.38385 * 120.16026 * 0.54782 * 18 17 16 20 20 C 1.38465 * 120.29299 * 359.69905 * 19 18 17 21 21 Cl 1.73598 * 119.93470 * 180.02562 * 20 19 18 22 22 C 1.38084 * 120.12526 * 0.02562 * 20 19 18 23 23 H 0.96994 * 119.99729 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47311 * 335.70613 * 10 9 7 25 25 H 1.09006 * 109.46609 * 215.71017 * 10 9 7 26 26 H 0.96705 * 117.00578 * 180.02562 * 13 11 10 27 27 H 1.07999 * 120.06097 * 359.97438 * 17 16 14 28 28 H 1.07996 * 119.92063 * 180.26633 * 18 17 16 29 29 H 1.08002 * 119.84969 * 179.72193 * 19 18 17 30 30 H 1.07999 * 120.08024 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 2.4951 2.0464 -1.4001 5 1 1.4452 2.6526 0.7001 6 1 3.5452 1.4400 0.7000 7 6 2.0088 -1.2042 -0.0005 8 1 3.0474 -1.2284 0.2949 9 7 1.3771 -2.3591 -0.3756 10 6 0.4318 -2.3466 -1.4948 11 6 1.1409 -2.7677 -2.7560 12 8 2.3155 -3.0490 -2.7235 13 8 0.4677 -2.8304 -3.9155 14 6 1.6245 -3.5076 0.2847 15 8 1.1285 -4.5490 -0.0999 16 6 2.4986 -3.5013 1.4756 17 6 2.6877 -2.3227 2.2007 18 6 3.5007 -2.3243 3.3148 19 6 4.1380 -3.4878 3.7087 20 6 3.9595 -4.6590 2.9920 21 17 4.7629 -6.1134 3.4949 22 6 3.1437 -4.6723 1.8780 23 1 -0.4849 0.8400 0.0004 24 1 0.0319 -1.3405 -1.6214 25 1 -0.3846 -3.0388 -1.2885 26 1 0.9651 -3.1061 -4.6977 27 1 2.1952 -1.4126 1.8917 28 1 3.6440 -1.4143 3.8784 29 1 4.7771 -3.4823 4.5793 30 1 3.0046 -5.5863 1.3198 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739086505.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:31 Heat of formation + Delta-G solvation = -92.907673 kcal Electronic energy + Delta-G solvation = -19954.342401 eV Core-core repulsion = 16548.137632 eV Total energy + Delta-G solvation = -3406.204770 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.90402 -39.09178 -37.62800 -36.06282 -35.49673 -35.01193 -31.87704 -30.85697 -30.33322 -27.82046 -25.34642 -23.09678 -22.04629 -21.08037 -19.54122 -18.04990 -17.44526 -16.55669 -15.92288 -15.62008 -15.20183 -14.94971 -14.81028 -14.20341 -14.03743 -13.62559 -13.21252 -12.98020 -12.88033 -12.27886 -11.91248 -11.65644 -11.37970 -11.19715 -11.10281 -11.00299 -10.78818 -10.74081 -10.62754 -10.49422 -9.86851 -9.37829 -8.84018 -8.54841 -8.22731 -7.86431 -6.71580 -4.38994 1.40159 1.70253 2.40902 2.96505 3.01996 3.08174 3.09707 3.42869 3.69415 3.95794 4.35218 4.51941 4.84688 5.26526 5.28346 5.70937 5.82606 5.89264 6.06907 6.11830 6.23182 6.33522 6.56809 6.61069 6.89280 7.03382 7.10990 7.13167 7.33228 7.50242 8.04187 8.61586 8.72615 9.11096 9.55376 10.31150 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.016043 B = 0.006681 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.907925 B = 4189.900354 C = 5487.342245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.042 3.958 3 Si 0.917 3.083 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.340 4.340 8 H 0.101 0.899 9 N -0.417 5.417 10 C 0.127 3.873 11 C 0.460 3.540 12 O -0.513 6.513 13 O -0.527 6.527 14 C 0.524 3.476 15 O -0.590 6.590 16 C -0.087 4.087 17 C -0.072 4.072 18 C -0.133 4.133 19 C -0.104 4.104 20 C -0.055 4.055 21 Cl -0.088 7.088 22 C -0.067 4.067 23 H 0.278 0.722 24 H 0.144 0.856 25 H 0.101 0.899 26 H 0.395 0.605 27 H 0.184 0.816 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.482 -0.607 2.922 4.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.166 4.166 3 Si 0.742 3.258 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.467 4.467 8 H 0.118 0.882 9 N -0.135 5.135 10 C 0.001 3.999 11 C 0.301 3.699 12 O -0.399 6.399 13 O -0.338 6.338 14 C 0.315 3.685 15 O -0.476 6.476 16 C -0.091 4.091 17 C -0.090 4.090 18 C -0.151 4.151 19 C -0.123 4.123 20 C -0.082 4.082 21 Cl -0.059 7.059 22 C -0.087 4.087 23 H 0.089 0.911 24 H 0.161 0.839 25 H 0.119 0.881 26 H 0.253 0.747 27 H 0.200 0.800 28 H 0.147 0.853 29 H 0.143 0.857 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.226 -1.043 3.120 4.608 hybrid contribution 0.925 0.515 -0.598 1.216 sum 4.151 -0.528 2.522 4.886 Atomic orbital electron populations 1.69820 1.06168 1.28806 1.44112 1.25501 0.95389 1.00087 0.95624 0.86068 0.79870 0.80738 0.79135 1.19875 1.20433 1.18698 1.19606 0.95881 0.84241 1.46969 0.88174 1.42819 1.38962 1.07711 1.23978 1.20955 0.92077 1.06158 0.80664 1.24989 0.86596 0.72999 0.85283 1.90636 1.17837 1.45303 1.86161 1.84598 1.47846 1.81909 1.19429 1.18175 0.83120 0.84020 0.83211 1.90643 1.55398 1.31996 1.69545 1.19864 0.98789 0.93326 0.97073 1.23043 0.94125 1.00461 0.91361 1.21191 0.98851 0.97374 0.97699 1.21101 1.00230 0.91491 0.99449 1.20632 1.01054 0.87819 0.98648 1.98326 1.79094 1.37518 1.90953 1.21091 0.94207 0.98885 0.94542 0.91147 0.83879 0.88123 0.74748 0.79979 0.85276 0.85680 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.74 11.49 55.50 0.64 -19.10 16 2 C 0.04 0.93 4.79 -17.45 -0.08 0.84 16 3 Si 0.92 17.58 29.59 -169.99 -5.03 12.55 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 7 C -0.34 -7.90 5.92 -15.00 -0.09 -7.99 16 8 H 0.10 2.31 6.34 -52.48 -0.33 1.98 16 9 N -0.42 -10.04 2.05 -117.21 -0.24 -10.28 16 10 C 0.13 2.86 5.43 -5.19 -0.03 2.83 16 11 C 0.46 9.94 8.36 36.00 0.30 10.24 16 12 O -0.51 -12.58 17.06 -18.75 -0.32 -12.90 16 13 O -0.53 -9.00 13.42 -39.25 -0.53 -9.53 16 14 C 0.52 12.86 7.28 -12.39 -0.09 12.77 16 15 O -0.59 -15.61 16.30 5.28 0.09 -15.53 16 16 C -0.09 -1.87 5.64 -104.97 -0.59 -2.46 16 17 C -0.07 -1.38 7.87 -39.17 -0.31 -1.69 16 18 C -0.13 -2.10 10.03 -39.64 -0.40 -2.50 16 19 C -0.10 -1.57 9.82 -39.44 -0.39 -1.96 16 20 C -0.06 -0.93 6.31 -39.55 -0.25 -1.18 16 21 Cl -0.09 -1.29 28.95 -51.86 -1.50 -2.79 16 22 C -0.07 -1.31 9.37 -39.13 -0.37 -1.68 16 23 H 0.28 6.04 8.31 -40.82 -0.34 5.70 16 24 H 0.14 3.23 5.63 -51.93 -0.29 2.94 16 25 H 0.10 2.23 7.67 -51.93 -0.40 1.83 16 26 H 0.40 4.82 9.10 45.56 0.41 5.24 16 27 H 0.18 3.72 4.79 -52.49 -0.25 3.47 16 28 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 29 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.13 2.66 7.82 -52.49 -0.41 2.25 16 LS Contribution 286.77 15.07 4.32 4.32 Total: -1.00 -28.56 286.77 -6.11 -34.67 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -1.25 Total: 11.35 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -2.29 Total: 7.23 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 0.40 Total: -29.38 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -0.76 Total: -37.95 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -1.50 Total: -2.79 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.56 -6.11 -34.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739086505.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.233 kcal (2) G-P(sol) polarization free energy of solvation -28.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds