Wall clock time and date at job start Tue Mar 31 2020 05:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86796 * 120.00134 * 2 1 4 4 H 1.48494 * 109.47316 * 239.99832 * 3 2 1 5 5 H 1.48501 * 109.47357 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47275 * 119.99799 * 3 2 1 7 7 C 1.39042 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99957 * 210.91637 * 7 2 1 9 9 N 1.36881 * 119.99970 * 30.64946 * 7 2 1 10 10 C 1.46500 * 120.00175 * 44.43052 * 9 7 2 11 11 C 1.50703 * 109.46847 * 271.11315 * 10 9 7 12 12 O 1.20830 * 120.00248 * 0.02562 * 11 10 9 13 13 O 1.34225 * 120.00358 * 179.97438 * 11 10 9 14 14 C 1.34780 * 119.99811 * 224.42733 * 9 7 2 15 15 O 1.21599 * 119.99805 * 357.64702 * 14 9 7 16 16 C 1.47652 * 119.99969 * 177.63642 * 14 9 7 17 17 C 1.39694 * 120.16361 * 344.74901 * 16 14 9 18 18 C 1.37876 * 119.85975 * 179.97438 * 17 16 14 19 19 C 1.38436 * 120.19251 * 0.02562 * 18 17 16 20 20 C 1.38290 * 120.32514 * 359.97438 * 19 18 17 21 21 C 1.38141 * 120.13739 * 359.67903 * 20 19 18 22 22 Cl 1.73600 * 120.09495 * 180.32025 * 21 20 19 23 23 H 0.96996 * 119.99872 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47622 * 31.11151 * 10 9 7 25 25 H 1.08998 * 109.47086 * 151.11814 * 10 9 7 26 26 H 0.96698 * 117.00870 * 180.02562 * 13 11 10 27 27 H 1.07997 * 120.06858 * 359.97438 * 17 16 14 28 28 H 1.08003 * 119.90033 * 180.02562 * 18 17 16 29 29 H 1.07989 * 119.83758 * 179.97438 * 19 18 17 30 30 H 1.08000 * 119.93042 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.1014 1.6963 -1.2124 5 1 1.2827 2.7465 -0.0006 6 1 3.1014 1.6964 1.2125 7 6 2.0088 -1.2042 0.0005 8 1 2.9738 -1.2704 0.4811 9 7 1.4678 -2.3070 -0.6033 10 6 0.8406 -2.1867 -1.9217 11 6 -0.6177 -1.8447 -1.7549 12 8 -1.0849 -1.7144 -0.6483 13 8 -1.3972 -1.6838 -2.8357 14 6 1.5121 -3.5037 0.0152 15 8 2.0704 -3.6123 1.0900 16 6 0.8827 -4.6828 -0.6123 17 6 -0.0205 -4.5192 -1.6654 18 6 -0.6042 -5.6246 -2.2471 19 6 -0.2981 -6.8951 -1.7902 20 6 0.5949 -7.0660 -0.7482 21 6 1.1931 -5.9684 -0.1603 22 17 2.3202 -6.1848 1.1422 23 1 -0.4850 0.8400 0.0004 24 1 1.3358 -1.3988 -2.4892 25 1 0.9331 -3.1323 -2.4558 26 1 -2.3259 -1.4647 -2.6786 27 1 -0.2610 -3.5290 -2.0231 28 1 -1.3022 -5.4989 -3.0616 29 1 -0.7589 -7.7568 -2.2497 30 1 0.8294 -8.0601 -0.3971 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739086849.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:38 Heat of formation + Delta-G solvation = -43.677362 kcal Electronic energy + Delta-G solvation = -20677.699077 eV Core-core repulsion = 17273.629094 eV Total energy + Delta-G solvation = -3404.069983 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.96241 -40.23476 -39.08031 -37.35326 -36.90908 -36.12676 -34.27751 -32.15347 -31.67296 -29.55752 -27.19017 -24.35620 -23.61932 -22.75525 -21.21583 -19.15438 -18.61796 -18.15323 -18.04223 -17.49645 -16.72014 -16.41112 -16.19928 -15.76602 -15.51356 -15.20538 -14.60032 -14.53178 -14.14526 -13.62538 -13.59607 -13.24346 -12.98165 -12.62830 -12.58647 -12.39561 -12.23385 -12.01901 -11.88181 -11.63052 -11.27989 -10.75598 -10.22601 -9.94029 -9.73700 -9.50867 -8.17304 -6.09853 -0.14107 0.19333 1.27363 1.38893 1.41220 1.51464 1.69183 1.94490 2.27852 2.46936 2.74045 2.88275 3.02395 3.72985 3.84838 4.08319 4.12560 4.33827 4.36543 4.46231 4.60526 4.82502 4.84126 5.18014 5.27108 5.38349 5.46267 5.81937 6.02122 6.19174 6.45385 7.12431 7.23117 7.52534 7.96222 8.60981 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.020163 B = 0.007711 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.330971 B = 3630.293200 C = 4749.408381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.013 3.987 3 Si 0.972 3.028 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.373 4.373 8 H 0.068 0.932 9 N -0.430 5.430 10 C 0.100 3.900 11 C 0.428 3.572 12 O -0.451 6.451 13 O -0.525 6.525 14 C 0.486 3.514 15 O -0.587 6.587 16 C -0.137 4.137 17 C -0.141 4.141 18 C -0.111 4.111 19 C -0.080 4.080 20 C -0.117 4.117 21 C -0.019 4.019 22 Cl -0.064 7.064 23 H 0.263 0.737 24 H 0.108 0.892 25 H 0.145 0.855 26 H 0.415 0.585 27 H 0.158 0.842 28 H 0.171 0.829 29 H 0.183 0.817 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 -10.309 -11.506 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.500 4.500 8 H 0.086 0.914 9 N -0.149 5.149 10 C -0.025 4.025 11 C 0.265 3.735 12 O -0.332 6.332 13 O -0.339 6.339 14 C 0.277 3.723 15 O -0.471 6.471 16 C -0.142 4.142 17 C -0.159 4.159 18 C -0.129 4.129 19 C -0.098 4.098 20 C -0.135 4.135 21 C -0.047 4.047 22 Cl -0.035 7.035 23 H 0.073 0.927 24 H 0.126 0.874 25 H 0.161 0.839 26 H 0.274 0.726 27 H 0.175 0.825 28 H 0.189 0.811 29 H 0.200 0.800 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.833 -10.282 -10.561 15.230 hybrid contribution -0.041 1.433 0.965 1.728 sum -3.873 -8.850 -9.596 13.616 Atomic orbital electron populations 1.70778 1.06682 1.27138 1.41201 1.26396 0.95677 1.02809 0.94690 0.85371 0.78472 0.77182 0.79528 1.17866 1.20330 1.20406 1.19110 1.02321 0.87498 1.41027 0.91407 1.43194 1.50284 1.06737 1.14726 1.21941 0.87434 1.05655 0.87457 1.23545 0.90705 0.76581 0.82645 1.90841 1.73836 1.41008 1.27499 1.84444 1.27195 1.84130 1.38174 1.19012 0.83297 0.84860 0.85112 1.90634 1.47889 1.85540 1.23049 1.20153 1.01759 0.92839 0.99404 1.22902 0.95526 1.02927 0.94537 1.21682 0.99133 0.91454 1.00602 1.21794 0.95025 0.98790 0.94154 1.21426 0.97349 0.97581 0.97193 1.21351 0.95994 0.94175 0.93143 1.98367 1.60071 1.97025 1.48059 0.92701 0.87440 0.83861 0.72565 0.82541 0.81140 0.80018 0.82007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.79 8.68 21.68 0.19 -45.60 16 2 C 0.01 0.69 4.95 84.96 0.42 1.11 16 3 Si 0.97 42.11 29.65 68.60 2.03 44.14 16 4 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.37 -21.45 8.61 84.10 0.72 -20.72 16 8 H 0.07 4.17 7.95 -2.91 -0.02 4.14 16 9 N -0.43 -22.54 2.09 -668.20 -1.39 -23.94 16 10 C 0.10 4.14 5.07 85.63 0.43 4.57 16 11 C 0.43 17.60 4.74 71.24 0.34 17.94 16 12 O -0.45 -23.15 13.57 21.95 0.30 -22.85 16 13 O -0.52 -15.77 13.37 -51.37 -0.69 -16.46 16 14 C 0.49 25.89 7.49 86.73 0.65 26.54 16 15 O -0.59 -35.44 14.14 -4.03 -0.06 -35.50 16 16 C -0.14 -5.76 5.73 -20.07 -0.12 -5.87 16 17 C -0.14 -4.69 7.48 22.54 0.17 -4.52 16 18 C -0.11 -2.51 10.03 22.23 0.22 -2.29 16 19 C -0.08 -1.54 10.04 22.33 0.22 -1.31 16 20 C -0.12 -2.97 9.82 22.26 0.22 -2.75 16 21 C -0.02 -0.69 6.35 22.62 0.14 -0.54 16 22 Cl -0.06 -2.56 26.16 -2.72 -0.07 -2.64 16 23 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 24 H 0.11 4.21 8.05 -2.39 -0.02 4.19 16 25 H 0.14 4.89 4.68 -2.39 -0.01 4.88 16 26 H 0.41 9.22 9.10 -74.06 -0.67 8.54 16 27 H 0.16 5.36 1.70 -22.24 -0.04 5.32 16 28 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 29 H 0.18 1.71 8.06 -2.92 -0.02 1.69 16 30 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -79.68 273.23 4.25 -75.43 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.51 Total: 15.24 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 3.43 Total: 12.17 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -1.21 Total: -69.53 kcal Atomic # 8 Polarization: -74.36 SS G_CDS: -0.45 Total: -74.81 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.07 Total: -2.64 kcal Total: -79.68 4.25 -75.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739086849.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.752 kcal (2) G-P(sol) polarization free energy of solvation -79.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds