Wall clock time and date at job start Tue Mar 31 2020 05:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31364 * 1 3 3 Si 1.86799 * 120.00091 * 2 1 4 4 H 1.48498 * 109.47086 * 275.22138 * 3 2 1 5 5 H 1.48504 * 109.47232 * 35.22164 * 3 2 1 6 6 H 1.48503 * 109.47327 * 155.22163 * 3 2 1 7 7 C 1.39043 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99758 * 350.21449 * 7 2 1 9 9 N 1.36878 * 120.00408 * 170.21138 * 7 2 1 10 10 C 1.46502 * 119.99858 * 310.73093 * 9 7 2 11 11 C 1.50701 * 109.47002 * 264.67327 * 10 9 7 12 12 O 1.20827 * 119.99949 * 0.02562 * 11 10 9 13 13 O 1.34228 * 120.00196 * 179.97438 * 11 10 9 14 14 C 1.34771 * 120.00121 * 130.72765 * 9 7 2 15 15 O 1.21599 * 120.00190 * 182.10410 * 14 9 7 16 16 C 1.47675 * 120.00030 * 2.10188 * 14 9 7 17 17 C 1.39686 * 120.13525 * 137.85270 * 16 14 9 18 18 C 1.37872 * 119.85849 * 180.27920 * 17 16 14 19 19 C 1.38534 * 120.13759 * 359.49152 * 18 17 16 20 20 Cl 1.73595 * 119.86148 * 180.25816 * 19 18 17 21 21 C 1.38528 * 120.27592 * 0.50810 * 19 18 17 22 22 C 1.37873 * 120.13735 * 359.74883 * 21 19 18 23 23 H 0.96998 * 119.99848 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47175 * 24.67453 * 10 9 7 25 25 H 1.08998 * 109.46939 * 144.68103 * 10 9 7 26 26 H 0.96696 * 116.99927 * 179.97438 * 13 11 10 27 27 H 1.08003 * 120.06727 * 0.02562 * 17 16 14 28 28 H 1.07996 * 119.93133 * 179.75068 * 18 17 16 29 29 H 1.08001 * 119.93128 * 179.72878 * 21 19 18 30 30 H 1.08006 * 120.06795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.3848 2.1101 -1.3942 5 1 1.5047 2.6183 0.8075 6 1 3.5961 1.4108 0.5868 7 6 2.0089 -1.2041 0.0005 8 1 1.4807 -2.1326 0.1599 9 7 3.3627 -1.2129 -0.2010 10 6 3.9405 -0.4749 -1.3270 11 6 4.1300 -1.4082 -2.4950 12 8 3.8144 -2.5704 -2.3970 13 8 4.6484 -0.9481 -3.6444 14 6 4.1643 -1.9003 0.6365 15 8 5.3699 -1.8770 0.4802 16 6 3.5783 -2.6819 1.7439 17 6 4.0701 -3.9553 2.0406 18 6 3.5150 -4.6824 3.0721 19 6 2.4787 -4.1484 3.8205 20 17 1.7895 -5.0674 5.1220 21 6 1.9866 -2.8862 3.5312 22 6 2.5297 -2.1513 2.4988 23 1 -0.4850 0.8400 0.0004 24 1 3.2690 0.3344 -1.6138 25 1 4.9047 -0.0603 -1.0332 26 1 4.7513 -1.5844 -4.3653 27 1 4.8808 -4.3709 1.4605 28 1 3.8916 -5.6686 3.2999 29 1 1.1756 -2.4770 4.1154 30 1 2.1449 -1.1674 2.2740 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739088262.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:42 Heat of formation + Delta-G solvation = -93.290946 kcal Electronic energy + Delta-G solvation = -19963.805248 eV Core-core repulsion = 16557.583859 eV Total energy + Delta-G solvation = -3406.221390 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.11554 -39.22592 -37.83700 -36.13023 -35.66893 -35.05381 -32.22342 -30.81744 -30.58658 -28.08131 -25.21871 -23.05537 -22.31210 -21.38966 -19.47521 -17.97976 -17.71417 -16.86097 -16.34376 -15.83499 -15.45739 -15.11375 -14.76544 -14.61948 -13.73239 -13.67267 -13.09859 -13.06826 -12.95971 -12.71232 -12.50317 -11.93789 -11.57573 -11.30859 -11.15376 -11.12919 -11.07181 -10.72059 -10.48488 -10.27776 -10.02797 -9.52464 -8.99167 -8.62392 -8.27168 -8.05049 -6.65016 -4.44019 1.30252 1.75384 2.35732 2.75173 2.88156 3.02726 3.09239 3.16910 3.61056 3.89308 4.10710 4.27227 4.75356 5.21458 5.23263 5.45974 5.61044 5.74040 5.76979 5.82600 5.83978 6.06717 6.37682 6.55688 6.68237 6.91506 6.93767 7.04070 7.20467 7.78720 8.09410 8.39583 8.66819 8.98645 9.31902 10.42743 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.018620 B = 0.006278 C = 0.005192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.387427 B = 4458.660540 C = 5391.718993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.069 3.931 3 Si 0.862 3.138 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.346 4.346 8 H 0.108 0.892 9 N -0.446 5.446 10 C 0.108 3.892 11 C 0.466 3.534 12 O -0.500 6.500 13 O -0.526 6.526 14 C 0.543 3.457 15 O -0.580 6.580 16 C -0.089 4.089 17 C -0.067 4.067 18 C -0.130 4.130 19 C -0.024 4.024 20 Cl -0.086 7.086 21 C -0.127 4.127 22 C -0.036 4.036 23 H 0.279 0.721 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.400 0.600 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.919 -2.142 2.888 5.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.140 4.140 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.473 4.473 8 H 0.126 0.874 9 N -0.167 5.167 10 C -0.017 4.017 11 C 0.306 3.694 12 O -0.385 6.385 13 O -0.337 6.337 14 C 0.334 3.666 15 O -0.463 6.463 16 C -0.092 4.092 17 C -0.086 4.086 18 C -0.148 4.148 19 C -0.050 4.050 20 Cl -0.058 7.058 21 C -0.146 4.146 22 C -0.055 4.055 23 H 0.090 0.910 24 H 0.126 0.874 25 H 0.129 0.871 26 H 0.258 0.742 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.105 -2.131 3.263 5.660 hybrid contribution 0.022 0.316 -0.649 0.722 sum 4.127 -1.815 2.614 5.211 Atomic orbital electron populations 1.69636 1.06045 1.28502 1.44321 1.25518 0.95310 0.98450 0.94730 0.87074 0.81480 0.83529 0.79210 1.19338 1.20345 1.17749 1.19119 0.79810 0.95800 1.52597 0.87440 1.43215 1.07593 1.46003 1.19885 1.21369 1.02151 0.93581 0.84584 1.24420 0.72771 0.88961 0.83287 1.90673 1.46130 1.19234 1.82496 1.84565 1.77198 1.47607 1.24359 1.18323 0.85550 0.80951 0.81825 1.90669 1.14597 1.66195 1.74885 1.19857 0.97334 0.95137 0.96905 1.21072 0.98602 0.92990 0.95952 1.20790 0.96933 1.00571 0.96542 1.21073 0.97664 0.93674 0.92630 1.98335 1.84397 1.74159 1.48886 1.21021 1.01346 0.93083 0.99111 1.21747 0.91560 1.01342 0.90852 0.90990 0.87358 0.87101 0.74169 0.85033 0.85213 0.84959 0.82532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.61 13.95 55.50 0.77 -20.83 16 2 C 0.07 1.66 5.17 -17.45 -0.09 1.57 16 3 Si 0.86 17.97 24.86 -169.99 -4.23 13.74 16 4 H -0.27 -5.35 6.91 56.52 0.39 -4.96 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.25 -5.25 7.01 56.52 0.40 -4.86 16 7 C -0.35 -8.41 6.61 -15.00 -0.10 -8.51 16 8 H 0.11 2.89 7.47 -52.48 -0.39 2.49 16 9 N -0.45 -10.28 1.55 -117.23 -0.18 -10.47 16 10 C 0.11 2.25 4.39 -5.19 -0.02 2.22 16 11 C 0.47 9.41 8.36 36.01 0.30 9.71 16 12 O -0.50 -11.65 17.07 -18.75 -0.32 -11.97 16 13 O -0.53 -8.21 13.42 -39.25 -0.53 -8.73 16 14 C 0.54 12.49 7.10 -12.41 -0.09 12.41 16 15 O -0.58 -14.13 16.61 5.28 0.09 -14.04 16 16 C -0.09 -1.83 5.29 -104.96 -0.55 -2.39 16 17 C -0.07 -1.20 9.66 -39.17 -0.38 -1.58 16 18 C -0.13 -2.03 9.81 -39.61 -0.39 -2.41 16 19 C -0.02 -0.37 6.33 -39.37 -0.25 -0.62 16 20 Cl -0.09 -1.19 28.95 -51.86 -1.50 -2.69 16 21 C -0.13 -2.12 9.81 -39.61 -0.39 -2.51 16 22 C -0.04 -0.70 8.10 -39.18 -0.32 -1.02 16 23 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 24 H 0.11 2.18 4.27 -51.93 -0.22 1.96 16 25 H 0.11 2.15 7.56 -51.93 -0.39 1.76 16 26 H 0.40 4.31 9.10 45.56 0.41 4.73 16 27 H 0.13 2.26 8.06 -52.48 -0.42 1.84 16 28 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 30 H 0.16 3.18 6.26 -52.48 -0.33 2.85 16 LS Contribution 285.20 15.07 4.30 4.30 Total: -1.00 -29.13 285.20 -5.21 -34.34 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -1.34 Total: 9.50 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -2.28 Total: 6.86 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: 0.59 Total: -31.30 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -0.76 Total: -34.75 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -4.23 Total: 13.74 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.50 Total: -2.69 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.13 -5.21 -34.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739088262.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.950 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds