Wall clock time and date at job start Tue Mar 31 2020 06:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00134 * 2 1 4 4 H 1.48505 * 109.47095 * 270.00330 * 3 2 1 5 5 H 1.48503 * 109.46962 * 30.00067 * 3 2 1 6 6 H 1.48498 * 109.47356 * 150.00104 * 3 2 1 7 7 C 1.38943 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00546 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00287 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00236 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00237 * 180.02562 * 10 9 7 13 13 O 1.45201 * 109.47562 * 179.97438 * 12 10 9 14 14 C 1.34770 * 117.00062 * 179.97438 * 13 12 10 15 15 O 1.21520 * 120.00163 * 0.02562 * 14 13 12 16 16 C 1.47280 * 119.99658 * 180.02562 * 14 13 12 17 17 C 1.39848 * 120.16996 * 359.72255 * 16 14 13 18 18 C 1.37635 * 119.92342 * 180.27712 * 17 16 14 19 19 C 1.38871 * 120.28363 * 359.97438 * 18 17 16 20 20 F 1.35104 * 119.82663 * 180.02562 * 19 18 17 21 21 C 1.38345 * 120.34768 * 0.02562 * 19 18 17 22 22 C 1.38571 * 120.06701 * 359.97438 * 21 19 18 23 23 O 1.35635 * 120.14337 * 180.02562 * 22 21 19 24 24 H 0.97004 * 120.00107 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99568 * 0.02562 * 9 7 2 26 26 H 1.09006 * 109.47458 * 59.99951 * 12 10 9 27 27 H 1.08997 * 109.47036 * 300.00313 * 12 10 9 28 28 H 1.07994 * 120.03357 * 0.25285 * 17 16 14 29 29 H 1.08000 * 119.85890 * 179.97438 * 18 17 16 30 30 H 1.07999 * 119.96753 * 180.02562 * 21 19 18 31 31 H 0.96695 * 114.00438 * 269.98202 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8629 -0.0011 13 8 2.1873 -5.9666 -0.0016 14 6 1.6721 -7.2119 -0.0016 15 8 0.4674 -7.3711 -0.0017 16 6 2.5693 -8.3799 -0.0016 17 6 3.9562 -8.2008 -0.0073 18 6 4.7899 -9.2959 -0.0130 19 6 4.2600 -10.5795 -0.0125 20 9 5.0869 -11.6479 -0.0175 21 6 2.8897 -10.7700 -0.0068 22 6 2.0370 -9.6777 -0.0010 23 8 0.6933 -9.8627 0.0050 24 1 -0.4850 0.8401 -0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6174 -4.9205 -0.8914 27 1 0.6167 -4.9208 0.8886 28 1 4.3725 -7.2043 -0.0077 29 1 5.8609 -9.1563 -0.0178 30 1 2.4842 -11.7709 -0.0060 31 1 0.2994 -9.9147 -0.8765 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750145398.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:57 Heat of formation + Delta-G solvation = -201.071309 kcal Electronic energy + Delta-G solvation = -20875.624584 eV Core-core repulsion = 17036.393112 eV Total energy + Delta-G solvation = -3839.231472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.12295 -41.88684 -40.52394 -39.77280 -37.81295 -37.28575 -36.02598 -33.42366 -32.44456 -31.18835 -29.89928 -26.71230 -25.14247 -24.08787 -22.28669 -21.43024 -20.07828 -19.84694 -19.23969 -18.28797 -17.87221 -17.61791 -17.49016 -17.26075 -16.75802 -16.57363 -15.93329 -15.83442 -15.60386 -15.22359 -14.91640 -14.72866 -14.23738 -14.00227 -13.57610 -13.52138 -13.07650 -12.92996 -12.64913 -12.47294 -12.15257 -12.11476 -11.87177 -11.57263 -11.54474 -10.51249 -10.19754 -10.11781 -9.92551 -8.52281 -6.02949 -0.67826 -0.02397 1.27261 1.29427 1.36512 1.44825 1.57680 1.87021 2.29607 2.34049 2.73576 3.00656 3.13482 3.22189 3.52377 3.63566 3.84571 4.00178 4.09862 4.15633 4.21959 4.44648 4.71001 4.82100 4.94893 5.01904 5.24452 5.37307 5.52854 5.89004 6.44780 6.58657 6.64141 7.02873 7.39884 7.92957 8.64768 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.037175 B = 0.003092 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.008472 B = 9053.370804 C = 9788.707143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.558 5.558 10 C 0.438 3.562 11 O -0.616 6.616 12 C 0.073 3.927 13 O -0.339 6.339 14 C 0.505 3.495 15 O -0.513 6.513 16 C -0.186 4.186 17 C -0.015 4.015 18 C -0.169 4.169 19 C 0.156 3.844 20 F -0.127 7.127 21 C -0.190 4.190 22 C 0.206 3.794 23 O -0.487 6.487 24 H 0.281 0.719 25 H 0.400 0.600 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.153 0.847 29 H 0.171 0.829 30 H 0.174 0.826 31 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.780 -20.175 -1.833 20.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.209 4.209 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.004 4.004 13 O -0.254 6.254 14 C 0.351 3.649 15 O -0.403 6.403 16 C -0.188 4.188 17 C -0.034 4.034 18 C -0.187 4.187 19 C 0.136 3.864 20 F -0.106 7.106 21 C -0.209 4.209 22 C 0.159 3.841 23 O -0.301 6.301 24 H 0.090 0.910 25 H 0.234 0.766 26 H 0.127 0.873 27 H 0.123 0.877 28 H 0.170 0.830 29 H 0.189 0.811 30 H 0.192 0.808 31 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 4.139 -20.065 -1.244 20.526 hybrid contribution -0.466 0.820 -0.439 1.040 sum 3.674 -19.246 -1.683 19.665 Atomic orbital electron populations 1.69671 1.06983 1.29735 1.49195 1.26124 0.96566 1.02601 0.95648 0.84857 0.77920 0.76343 0.78806 1.19423 1.19519 1.19466 1.19733 0.92985 0.83348 1.50639 0.89653 1.41738 1.09573 1.04183 1.64021 1.20061 0.88091 0.85305 0.84130 1.90520 1.15332 1.87681 1.56732 1.22526 0.90119 0.82310 1.05429 1.86580 1.40393 1.14596 1.83857 1.21311 0.87453 0.83249 0.72934 1.90838 1.16336 1.86746 1.46420 1.19678 0.94002 0.90442 1.14655 1.21400 0.90570 1.00838 0.90543 1.21364 1.02944 0.89613 1.04772 1.17799 0.87512 0.83673 0.97375 1.91562 1.71505 1.54418 1.93089 1.21427 0.91208 1.01002 1.07262 1.18099 0.84452 0.88936 0.92577 1.84699 1.15587 1.94238 1.35591 0.90967 0.76569 0.87346 0.87710 0.82979 0.81105 0.80842 0.71971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.38 13.05 21.66 0.28 -48.10 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.01 16 3 Si 1.00 41.66 29.55 68.60 2.03 43.68 16 4 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.34 -18.80 9.68 84.04 0.81 -17.99 16 8 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.34 5.29 -306.99 -1.62 -29.96 16 10 C 0.44 21.08 7.86 87.66 0.69 21.76 16 11 O -0.62 -34.31 16.08 15.72 0.25 -34.06 16 12 C 0.07 2.73 5.95 71.24 0.42 3.16 16 13 O -0.34 -12.37 9.00 -50.42 -0.45 -12.82 16 14 C 0.50 16.01 7.88 70.20 0.55 16.56 16 15 O -0.51 -17.48 14.95 26.78 0.40 -17.08 16 16 C -0.19 -4.62 5.89 -20.01 -0.12 -4.74 16 17 C -0.02 -0.32 9.61 22.52 0.22 -0.11 16 18 C -0.17 -2.73 10.00 22.28 0.22 -2.50 16 19 C 0.16 2.48 7.30 22.45 0.16 2.65 16 20 F -0.13 -2.02 17.26 44.97 0.78 -1.25 16 21 C -0.19 -2.96 9.95 22.37 0.22 -2.74 16 22 C 0.21 4.21 6.72 22.84 0.15 4.36 16 23 O -0.49 -9.90 11.57 -68.54 -0.79 -10.69 16 24 H 0.28 13.83 8.31 -92.70 -0.77 13.06 16 25 H 0.40 19.17 7.90 -92.71 -0.73 18.43 16 26 H 0.11 3.58 8.14 -2.38 -0.02 3.56 16 27 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 28 H 0.15 3.49 7.61 -2.91 -0.02 3.47 16 29 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 30 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 31 H 0.42 4.97 9.06 -74.06 -0.67 4.30 16 Total: -1.00 -69.96 296.83 4.50 -65.47 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.18 Total: 24.37 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 3.81 Total: 20.43 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -1.34 Total: -78.06 kcal Atomic # 8 Polarization: -74.05 SS G_CDS: -0.59 Total: -74.65 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.78 Total: -1.25 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -69.96 4.50 -65.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750145398.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.604 kcal (2) G-P(sol) polarization free energy of solvation -69.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds