Wall clock time and date at job start Tue Mar 31 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32744 * 123.45453 * 2 1 4 4 S 1.75502 * 110.60052 * 180.02562 * 3 2 1 5 5 C 1.70446 * 92.45204 * 359.97438 * 4 3 2 6 6 C 1.36107 * 110.81088 * 0.02562 * 5 4 3 7 7 C 1.47026 * 123.47495 * 180.02562 * 6 5 4 8 8 O 1.21563 * 119.99942 * 179.97438 * 7 6 5 9 9 O 1.34797 * 120.00442 * 359.96345 * 7 6 5 10 10 C 1.45194 * 117.00358 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47184 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00125 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99764 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99519 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46864 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00079 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00116 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99918 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99898 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47055 * 90.00160 * 19 17 15 21 21 H 1.48501 * 109.46495 * 210.00191 * 19 17 15 22 22 H 1.48497 * 109.47002 * 329.99814 * 19 17 15 23 23 H 1.08997 * 109.47237 * 89.97414 * 1 2 3 24 24 H 1.08997 * 109.47072 * 209.97460 * 1 2 3 25 25 H 1.09002 * 109.47385 * 329.97563 * 1 2 3 26 26 H 1.08004 * 124.69916 * 359.75605 * 3 2 1 27 27 H 1.08006 * 124.59569 * 180.02562 * 5 4 3 28 28 H 1.08998 * 109.47131 * 299.99801 * 10 9 7 29 29 H 1.09006 * 109.47117 * 59.99902 * 10 9 7 30 30 H 0.96991 * 120.00218 * 359.97438 * 13 11 10 31 31 H 1.08994 * 109.47386 * 299.99153 * 14 13 11 32 32 H 1.08994 * 109.47481 * 59.99982 * 14 13 11 33 33 H 0.96996 * 119.99583 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2388 1.1075 0.0000 4 16 3.9498 0.7171 -0.0007 5 6 3.6421 -0.9594 -0.0003 6 6 2.3034 -1.2053 -0.0002 7 6 1.7274 -2.5580 0.0008 8 8 0.5206 -2.7047 0.0013 9 8 2.5373 -3.6355 0.0008 10 6 1.8993 -4.9398 0.0024 11 6 2.9548 -6.0154 0.0016 12 8 4.1291 -5.7126 -0.0006 13 7 2.5937 -7.3139 0.0022 14 6 3.6199 -8.3595 0.0020 15 6 2.9577 -9.7132 0.0034 16 1 1.8802 -9.7873 0.0040 17 6 3.7273 -10.8572 0.0030 18 7 5.0394 -10.7670 0.0018 19 14 2.9063 -12.5352 0.0041 20 1 2.6876 -12.9801 -1.3957 21 1 3.7787 -13.5124 0.7036 22 1 1.6003 -12.4468 0.7053 23 1 -0.3633 0.0005 -1.0276 24 1 -0.3633 -0.8902 0.5134 25 1 -0.3634 0.8898 0.5142 26 1 1.8369 2.1100 -0.0038 27 1 4.4058 -1.7231 -0.0001 28 1 1.2789 -5.0397 0.8930 29 1 1.2772 -5.0410 -0.8870 30 1 1.6545 -7.5561 0.0035 31 1 4.2405 -8.2593 -0.8884 32 1 4.2416 -8.2586 0.8915 33 1 5.5807 -11.5718 0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750385552.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:07 Heat of formation + Delta-G solvation = -96.790607 kcal Electronic energy + Delta-G solvation = -18784.802101 eV Core-core repulsion = 15516.305756 eV Total energy + Delta-G solvation = -3268.496345 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.59849 -38.85792 -37.77088 -36.17487 -34.26546 -32.42849 -31.62150 -29.26306 -27.97595 -26.68353 -24.72716 -22.68448 -21.60632 -19.96876 -19.13462 -18.04441 -17.55196 -17.25330 -16.61127 -16.15125 -15.52172 -15.07604 -14.76634 -14.39118 -13.99203 -13.93057 -13.45199 -13.06816 -12.92810 -12.92166 -12.47367 -12.33113 -12.18072 -12.00752 -11.77984 -11.19147 -11.02628 -10.93070 -10.69697 -10.45206 -10.35630 -9.45481 -9.22220 -9.19935 -8.79585 -8.70186 -8.00597 -6.20884 -4.28313 0.43094 1.21217 1.56266 1.59569 2.43537 2.90160 3.16438 3.22439 3.28689 3.31086 3.99230 4.32393 4.42709 4.79248 4.85710 5.09560 5.15333 5.17860 5.23530 5.27587 5.32853 5.45815 5.50564 5.69477 5.94167 6.09755 6.41732 7.20956 7.29093 7.44210 7.58125 7.69278 7.90608 8.48284 8.69578 8.94623 9.38141 10.89291 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.041831 B = 0.002764 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.200446 B =10128.978713 C =10772.431155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.048 4.048 3 C -0.251 4.251 4 S 0.197 5.803 5 C -0.172 4.172 6 C -0.152 4.152 7 C 0.528 3.472 8 O -0.505 6.505 9 O -0.326 6.326 10 C 0.051 3.949 11 C 0.500 3.500 12 O -0.535 6.535 13 N -0.706 5.706 14 C 0.251 3.749 15 C -0.545 4.545 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.171 0.829 27 H 0.185 0.815 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.393 0.607 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.988 23.238 0.021 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.058 4.058 3 C -0.386 4.386 4 S 0.465 5.535 5 C -0.310 4.310 6 C -0.168 4.168 7 C 0.371 3.629 8 O -0.395 6.395 9 O -0.241 6.241 10 C -0.027 4.027 11 C 0.283 3.717 12 O -0.413 6.413 13 N -0.356 5.356 14 C 0.131 3.869 15 C -0.584 4.584 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.092 0.908 24 H 0.109 0.891 25 H 0.084 0.916 26 H 0.188 0.812 27 H 0.203 0.797 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.226 0.774 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.943 24.126 0.024 24.627 hybrid contribution -2.136 -2.126 -0.030 3.014 sum -7.079 22.000 -0.006 23.111 Atomic orbital electron populations 1.20689 0.88484 1.03849 1.03099 1.19791 0.97546 0.89483 0.98956 1.25280 0.96550 1.02576 1.14165 1.83109 1.05386 0.96556 1.68486 1.26063 1.00175 1.03061 1.01688 1.19275 0.92411 0.90913 1.14160 1.20420 0.84778 0.84830 0.72833 1.90799 1.15346 1.86924 1.46480 1.86610 1.39559 1.14225 1.83690 1.22874 0.95390 0.79728 1.04699 1.19882 0.89289 0.83804 0.78728 1.90698 1.18605 1.82324 1.49658 1.46361 1.11864 1.05004 1.72391 1.19175 0.86429 0.83272 0.98021 1.21209 0.93419 0.90215 1.53516 0.91750 1.24956 0.94814 0.99627 0.94596 1.69973 1.04032 1.29521 1.48690 0.86386 0.79218 0.82888 0.78263 1.20416 1.20967 1.19700 0.90799 0.89068 0.91585 0.81158 0.79749 0.88390 0.88393 0.77389 0.95256 0.95254 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 9.55 36.01 0.34 -0.61 16 2 C -0.05 -0.50 6.01 -104.05 -0.63 -1.12 16 3 C -0.25 -2.05 10.91 28.85 0.31 -1.74 16 4 S 0.20 1.56 23.02 -107.50 -2.47 -0.92 16 5 C -0.17 -1.86 10.56 29.97 0.32 -1.54 16 6 C -0.15 -1.89 5.98 -104.65 -0.63 -2.51 16 7 C 0.53 7.76 7.92 34.29 0.27 8.04 16 8 O -0.51 -7.80 14.00 -19.32 -0.27 -8.07 16 9 O -0.33 -5.29 9.41 -47.44 -0.45 -5.74 16 10 C 0.05 0.78 5.96 36.01 0.21 0.99 16 11 C 0.50 10.01 7.91 -10.98 -0.09 9.92 16 12 O -0.54 -13.01 16.50 -14.10 -0.23 -13.24 16 13 N -0.71 -14.55 5.55 -61.48 -0.34 -14.89 16 14 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 15 C -0.55 -14.57 9.28 -34.44 -0.32 -14.89 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 18 N -0.88 -25.81 13.29 55.43 0.74 -25.07 16 19 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.09 1.02 6.02 -51.93 -0.31 0.71 16 25 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 26 H 0.17 0.94 8.06 -52.48 -0.42 0.51 16 27 H 0.19 1.98 8.02 -52.48 -0.42 1.56 16 28 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -32.95 312.72 -7.22 -40.17 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -3.56 Total: 2.72 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.32 Total: 4.72 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.40 Total: -39.97 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.95 Total: -27.06 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.47 Total: -0.92 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.95 -7.22 -40.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750385552.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.616 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds