Wall clock time and date at job start Tue Mar 31 2020 06:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47299 * 2 1 4 4 C 1.36942 * 120.00080 * 289.65445 * 3 2 1 5 5 H 1.07998 * 119.99962 * 305.76114 * 4 3 2 6 6 C 1.38812 * 119.99851 * 125.75587 * 4 3 2 7 7 N 1.31617 * 119.99761 * 167.75960 * 6 4 3 8 8 Si 1.86799 * 120.00342 * 347.75964 * 6 4 3 9 9 H 1.48493 * 109.47143 * 96.02319 * 8 6 4 10 10 H 1.48504 * 109.46938 * 216.02530 * 8 6 4 11 11 H 1.48496 * 109.47021 * 336.02054 * 8 6 4 12 12 S 1.65601 * 120.00248 * 109.92673 * 3 2 1 13 13 O 1.42094 * 106.40444 * 193.83117 * 12 3 2 14 14 O 1.42103 * 106.39800 * 326.75138 * 12 3 2 15 15 C 1.76203 * 107.21723 * 80.28774 * 12 3 2 16 16 C 1.37905 * 120.08818 * 13.02846 * 15 12 3 17 17 C 1.38378 * 120.17464 * 179.97438 * 16 15 12 18 18 C 1.38429 * 120.34499 * 359.97438 * 17 16 15 19 19 C 1.37857 * 120.17556 * 0.02586 * 18 17 16 20 20 C 1.39835 * 120.08725 * 192.74850 * 15 12 3 21 21 C 1.47165 * 120.16852 * 0.02562 * 20 15 12 22 22 O 1.21255 * 120.00363 * 354.17959 * 21 20 15 23 23 H 1.09004 * 109.47140 * 54.95106 * 1 2 3 24 24 H 1.09000 * 109.47020 * 174.94498 * 1 2 3 25 25 H 1.08999 * 109.46896 * 294.94729 * 1 2 3 26 26 H 1.08999 * 109.47452 * 240.00279 * 2 1 3 27 27 H 1.08995 * 109.47230 * 119.99887 * 2 1 3 28 28 H 0.97002 * 120.00304 * 180.02562 * 7 6 4 29 29 H 1.08001 * 119.91198 * 359.97438 * 16 15 12 30 30 H 1.08002 * 119.82763 * 179.97438 * 17 16 15 31 31 H 1.08006 * 119.90891 * 180.02562 * 18 17 16 32 32 H 1.08003 * 120.08903 * 179.97438 * 19 18 17 33 33 H 1.08009 * 119.99650 * 174.17936 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.8706 2.1597 -1.1169 5 1 2.2417 1.8128 -2.0699 6 6 1.2436 3.3947 -1.0240 7 7 1.3112 4.2441 -2.0271 8 14 0.3042 3.8513 0.5247 9 1 1.1809 4.6503 1.4180 10 1 -0.8923 4.6517 0.1600 11 1 -0.1230 2.6147 1.2272 12 16 2.7552 1.9989 1.3483 13 8 2.8144 3.4066 1.1638 14 8 2.1253 1.3872 2.4655 15 6 4.4214 1.4256 1.3410 16 6 4.9484 0.8468 0.2056 17 6 6.2568 0.3964 0.1977 18 6 7.0469 0.5232 1.3273 19 6 6.5347 1.0996 2.4700 20 6 5.2146 1.5617 2.4845 21 6 4.6616 2.1833 3.6984 22 8 3.5529 2.6738 3.6773 23 1 -0.3633 0.5902 -0.8413 24 1 -0.3633 -1.0237 -0.0906 25 1 -0.3633 0.4335 0.9318 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 0.8734 5.1072 -1.9622 29 1 4.3383 0.7447 -0.6797 30 1 6.6637 -0.0564 -0.6943 31 1 8.0673 0.1697 1.3132 32 1 7.1522 1.1975 3.3507 33 1 5.2435 2.2026 4.6082 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751033321.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:46 Heat of formation + Delta-G solvation = -55.110168 kcal Electronic energy + Delta-G solvation = -21406.667637 eV Core-core repulsion = 18139.978691 eV Total energy + Delta-G solvation = -3266.688946 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.64404 -37.97501 -36.04541 -35.76092 -34.36619 -32.32235 -31.35699 -30.99235 -29.37253 -24.92217 -24.57104 -22.81174 -21.56012 -20.96429 -18.94828 -18.21420 -16.75276 -16.33464 -15.81776 -15.52571 -15.11860 -14.67450 -14.37593 -14.18942 -13.96288 -13.85894 -13.47038 -13.05155 -12.64863 -12.43392 -12.34044 -11.89619 -11.57152 -11.34005 -11.25211 -11.09985 -10.62052 -10.56937 -10.22966 -9.99710 -9.83208 -9.69861 -9.34947 -9.06444 -8.88304 -8.60092 -7.95115 -6.51872 -4.30686 0.63917 1.28910 1.66750 2.56976 3.36077 3.46301 3.68509 3.79608 4.15599 4.26149 4.42296 4.76476 4.88466 4.95166 5.08933 5.12540 5.44444 5.56304 5.75944 5.79950 5.96711 5.97533 6.05942 6.15040 6.17414 6.32680 6.41525 6.42179 6.68753 6.94093 6.97819 7.16986 7.49455 7.70124 8.11853 8.94475 9.07007 10.49454 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.020785 B = 0.009027 C = 0.008293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.778960 B = 3101.020031 C = 3375.512461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.130 3.870 3 N -0.845 5.845 4 C -0.266 4.266 5 H 0.097 0.903 6 C 0.094 3.906 7 N -0.829 5.829 8 Si 0.844 3.156 9 H -0.227 1.227 10 H -0.287 1.287 11 H -0.253 1.253 12 S 2.538 3.462 13 O -0.945 6.945 14 O -0.984 6.984 15 C -0.596 4.596 16 C -0.043 4.043 17 C -0.110 4.110 18 C -0.108 4.108 19 C -0.094 4.094 20 C -0.116 4.116 21 C 0.354 3.646 22 O -0.423 6.423 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.282 0.718 29 H 0.146 0.854 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.015 -8.712 4.542 13.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.003 3.997 3 N -0.673 5.673 4 C -0.414 4.414 5 H 0.114 0.886 6 C -0.122 4.122 7 N -0.465 5.465 8 Si 0.671 3.329 9 H -0.152 1.152 10 H -0.215 1.215 11 H -0.177 1.177 12 S 2.638 3.362 13 O -0.933 6.933 14 O -0.973 6.973 15 C -0.673 4.673 16 C -0.062 4.062 17 C -0.129 4.129 18 C -0.126 4.126 19 C -0.113 4.113 20 C -0.118 4.118 21 C 0.210 3.790 22 O -0.294 6.294 23 H 0.089 0.911 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.163 0.837 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.226 -7.846 5.367 12.571 hybrid contribution 0.585 -0.005 0.397 0.707 sum 8.811 -7.851 5.764 13.134 Atomic orbital electron populations 1.22091 0.96296 1.00586 1.03104 1.21140 0.94886 0.83287 1.00380 1.53301 1.62021 1.20088 1.31871 1.18833 1.35053 0.99743 0.87748 0.88557 1.25851 0.93766 0.95419 0.97215 1.69716 1.37825 1.07160 1.31764 0.87293 0.79077 0.82168 0.84401 1.15198 1.21531 1.17710 1.10822 0.73542 0.76277 0.75569 1.93434 1.85015 1.29192 1.85694 1.93387 1.73713 1.77838 1.52371 1.32708 1.29585 1.07287 0.97700 1.21066 0.95417 0.92942 0.96756 1.21559 0.94361 0.98623 0.98342 1.21221 0.99722 0.98431 0.93179 1.21376 0.94094 0.97118 0.98663 1.20605 0.95298 1.00724 0.95141 1.24362 0.87508 0.75577 0.91536 1.90631 1.19751 1.33301 1.85699 0.91128 0.93000 0.92741 0.92218 0.92099 0.90744 0.83673 0.85201 0.85356 0.84940 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.07 37.16 0.37 -2.67 16 2 C 0.13 2.54 6.29 -4.04 -0.03 2.52 16 3 N -0.85 -20.20 1.21 -59.91 -0.07 -20.27 16 4 C -0.27 -6.92 9.07 -15.06 -0.14 -7.05 16 5 H 0.10 2.47 8.06 -52.49 -0.42 2.05 16 6 C 0.09 2.65 4.88 -17.43 -0.09 2.56 16 7 N -0.83 -23.55 13.97 55.49 0.78 -22.77 16 8 Si 0.84 23.17 24.41 -169.99 -4.15 19.02 16 9 H -0.23 -6.71 6.05 56.52 0.34 -6.36 16 10 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.25 -6.82 6.40 56.52 0.36 -6.45 16 12 S 2.54 65.59 2.34 -107.50 -0.25 65.34 16 13 O -0.94 -27.68 11.57 -64.34 -0.74 -28.42 16 14 O -0.98 -26.75 14.63 -67.07 -0.98 -27.73 16 15 C -0.60 -12.65 5.87 -39.11 -0.23 -12.88 16 16 C -0.04 -0.78 9.56 -39.65 -0.38 -1.16 16 17 C -0.11 -1.54 10.04 -39.46 -0.40 -1.94 16 18 C -0.11 -1.33 10.03 -39.65 -0.40 -1.73 16 19 C -0.09 -1.26 9.80 -39.11 -0.38 -1.64 16 20 C -0.12 -2.11 5.87 -105.06 -0.62 -2.73 16 21 C 0.35 6.31 11.32 34.35 0.39 6.70 16 22 O -0.42 -10.02 12.66 -24.65 -0.31 -10.33 16 23 H 0.07 1.38 7.78 -51.93 -0.40 0.98 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 1.12 7.44 -51.93 -0.39 0.73 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 1.13 7.42 -51.93 -0.39 0.74 16 28 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.15 2.56 7.24 -52.49 -0.38 2.18 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 287.91 15.07 4.34 4.34 Total: -1.00 -35.57 287.91 -7.03 -42.60 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -3.75 Total: -1.76 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -1.89 Total: -20.01 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.70 Total: -43.05 kcal Atomic # 8 Polarization: -64.44 SS G_CDS: -2.04 Total: -66.48 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.15 Total: 19.02 kcal Atomic # 16 Polarization: 65.59 SS G_CDS: -0.25 Total: 65.34 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -35.57 -7.03 -42.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751033321.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.506 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds