Wall clock time and date at job start Tue Mar 31 2020 06:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47299 * 2 1 4 4 C 1.36942 * 120.00080 * 289.65445 * 3 2 1 5 5 H 1.07998 * 119.99962 * 305.76114 * 4 3 2 6 6 C 1.38812 * 119.99851 * 125.75587 * 4 3 2 7 7 N 1.31617 * 119.99761 * 167.75960 * 6 4 3 8 8 Si 1.86799 * 120.00342 * 347.75964 * 6 4 3 9 9 H 1.48493 * 109.47143 * 96.02319 * 8 6 4 10 10 H 1.48504 * 109.46938 * 216.02530 * 8 6 4 11 11 H 1.48496 * 109.47021 * 336.02054 * 8 6 4 12 12 S 1.65601 * 120.00248 * 109.92673 * 3 2 1 13 13 O 1.42094 * 106.40444 * 193.83117 * 12 3 2 14 14 O 1.42103 * 106.39800 * 326.75138 * 12 3 2 15 15 C 1.76203 * 107.21723 * 80.28774 * 12 3 2 16 16 C 1.37905 * 120.08818 * 13.02846 * 15 12 3 17 17 C 1.38378 * 120.17464 * 179.97438 * 16 15 12 18 18 C 1.38429 * 120.34499 * 359.97438 * 17 16 15 19 19 C 1.37857 * 120.17556 * 0.02586 * 18 17 16 20 20 C 1.39835 * 120.08725 * 192.74850 * 15 12 3 21 21 C 1.47165 * 120.16852 * 0.02562 * 20 15 12 22 22 O 1.21255 * 120.00363 * 354.17959 * 21 20 15 23 23 H 1.09004 * 109.47140 * 54.95106 * 1 2 3 24 24 H 1.09000 * 109.47020 * 174.94498 * 1 2 3 25 25 H 1.08999 * 109.46896 * 294.94729 * 1 2 3 26 26 H 1.08999 * 109.47452 * 240.00279 * 2 1 3 27 27 H 1.08995 * 109.47230 * 119.99887 * 2 1 3 28 28 H 0.97002 * 120.00304 * 180.02562 * 7 6 4 29 29 H 1.08001 * 119.91198 * 359.97438 * 16 15 12 30 30 H 1.08002 * 119.82763 * 179.97438 * 17 16 15 31 31 H 1.08006 * 119.90891 * 180.02562 * 18 17 16 32 32 H 1.08003 * 120.08903 * 179.97438 * 19 18 17 33 33 H 1.08009 * 119.99650 * 174.17936 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.8706 2.1597 -1.1169 5 1 2.2417 1.8128 -2.0699 6 6 1.2436 3.3947 -1.0240 7 7 1.3112 4.2441 -2.0271 8 14 0.3042 3.8513 0.5247 9 1 1.1809 4.6503 1.4180 10 1 -0.8923 4.6517 0.1600 11 1 -0.1230 2.6147 1.2272 12 16 2.7552 1.9989 1.3483 13 8 2.8144 3.4066 1.1638 14 8 2.1253 1.3872 2.4655 15 6 4.4214 1.4256 1.3410 16 6 4.9484 0.8468 0.2056 17 6 6.2568 0.3964 0.1977 18 6 7.0469 0.5232 1.3273 19 6 6.5347 1.0996 2.4700 20 6 5.2146 1.5617 2.4845 21 6 4.6616 2.1833 3.6984 22 8 3.5529 2.6738 3.6773 23 1 -0.3633 0.5902 -0.8413 24 1 -0.3633 -1.0237 -0.0906 25 1 -0.3633 0.4335 0.9318 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 0.8734 5.1072 -1.9622 29 1 4.3383 0.7447 -0.6797 30 1 6.6637 -0.0564 -0.6943 31 1 8.0673 0.1697 1.3132 32 1 7.1522 1.1975 3.3507 33 1 5.2435 2.2026 4.6082 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751033321.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:46 Heat of formation + Delta-G solvation = -81.198229 kcal Electronic energy + Delta-G solvation = -21407.798901 eV Core-core repulsion = 18139.978691 eV Total energy + Delta-G solvation = -3267.820209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00592 -39.31619 -37.92779 -37.81955 -36.46208 -34.32874 -32.59306 -32.24335 -31.09473 -26.65555 -26.07087 -24.06121 -23.23575 -22.33124 -20.94726 -19.85536 -18.29433 -18.04065 -17.44335 -17.12479 -16.93035 -16.49166 -15.83271 -15.70318 -15.44674 -15.42749 -15.17953 -14.87853 -14.41486 -13.85343 -13.73648 -13.71214 -13.30567 -13.16661 -12.93823 -12.71945 -12.63564 -12.37712 -12.07625 -11.91131 -11.68668 -11.38616 -11.04570 -10.77645 -10.30603 -10.08367 -9.85351 -8.64500 -6.39256 -0.66667 -0.24148 0.09772 1.12961 1.21579 1.31061 1.44903 2.17083 2.43758 2.60176 2.83116 3.03649 3.08611 3.71414 3.98646 4.02321 4.14209 4.18107 4.32854 4.40879 4.49750 4.58206 4.62905 4.84740 4.89625 5.02387 5.08899 5.17581 5.29521 5.32518 5.50277 5.80240 5.84044 6.03837 6.20042 6.88380 7.09464 8.42201 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.020785 B = 0.009027 C = 0.008293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.778960 B = 3101.020031 C = 3375.512461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.117 3.883 3 N -0.859 5.859 4 C -0.266 4.266 5 H 0.099 0.901 6 C 0.069 3.931 7 N -0.866 5.866 8 Si 0.853 3.147 9 H -0.267 1.267 10 H -0.269 1.269 11 H -0.255 1.255 12 S 2.565 3.435 13 O -0.993 6.993 14 O -1.010 7.010 15 C -0.639 4.639 16 C -0.063 4.063 17 C -0.102 4.102 18 C -0.088 4.088 19 C -0.070 4.070 20 C -0.150 4.150 21 C 0.351 3.649 22 O -0.497 6.497 23 H 0.057 0.943 24 H 0.097 0.903 25 H 0.026 0.974 26 H 0.095 0.905 27 H 0.070 0.930 28 H 0.283 0.717 29 H 0.137 0.863 30 H 0.170 0.830 31 H 0.186 0.814 32 H 0.190 0.810 33 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.232 -11.722 5.344 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.689 5.689 4 C -0.410 4.410 5 H 0.116 0.884 6 C -0.143 4.143 7 N -0.505 5.505 8 Si 0.681 3.319 9 H -0.194 1.194 10 H -0.196 1.196 11 H -0.179 1.179 12 S 2.670 3.330 13 O -0.983 6.983 14 O -0.999 6.999 15 C -0.724 4.724 16 C -0.082 4.082 17 C -0.121 4.121 18 C -0.105 4.105 19 C -0.088 4.088 20 C -0.153 4.153 21 C 0.213 3.787 22 O -0.372 6.372 23 H 0.077 0.923 24 H 0.115 0.885 25 H 0.046 0.954 26 H 0.113 0.887 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.154 0.846 30 H 0.188 0.812 31 H 0.203 0.797 32 H 0.207 0.793 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 12.321 -10.839 6.092 17.504 hybrid contribution -0.313 0.659 0.357 0.812 sum 12.008 -10.180 6.449 17.012 Atomic orbital electron populations 1.22114 0.95942 1.02965 1.01072 1.21508 0.95386 0.81431 1.02461 1.53207 1.64010 1.21429 1.30225 1.18715 1.34598 0.99233 0.88407 0.88372 1.26081 0.94766 0.96472 0.96977 1.69714 1.40672 1.07860 1.32211 0.87145 0.79147 0.81706 0.83952 1.19398 1.19563 1.17899 1.08152 0.75183 0.74967 0.74745 1.93377 1.86493 1.32134 1.86248 1.93352 1.75659 1.78034 1.52871 1.31715 1.27089 1.12275 1.01339 1.21200 0.97759 0.93777 0.95416 1.22053 0.92307 0.96937 1.00771 1.21987 1.01704 0.95332 0.91466 1.22029 0.91824 0.93876 1.01120 1.21027 0.97585 1.02386 0.94263 1.25618 0.86622 0.72751 0.93714 1.90624 1.23163 1.36757 1.86654 0.92349 0.88485 0.95439 0.88713 0.91201 0.90728 0.84553 0.81250 0.79655 0.79275 0.79358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.11 10.07 71.98 0.72 -5.38 16 2 C 0.12 4.57 6.29 86.38 0.54 5.11 16 3 N -0.86 -42.16 1.21 -343.46 -0.42 -42.58 16 4 C -0.27 -14.35 9.07 84.03 0.76 -13.59 16 5 H 0.10 5.19 8.06 -2.91 -0.02 5.17 16 6 C 0.07 4.07 4.88 84.86 0.41 4.49 16 7 N -0.87 -51.62 13.97 21.65 0.30 -51.32 16 8 Si 0.85 49.55 24.41 68.60 1.67 51.22 16 9 H -0.27 -17.12 6.05 99.48 0.60 -16.52 16 10 H -0.27 -14.41 7.11 99.48 0.71 -13.71 16 11 H -0.25 -14.59 6.40 99.48 0.64 -13.95 16 12 S 2.57 137.18 2.34 -56.49 -0.13 137.05 16 13 O -0.99 -61.66 11.57 -121.15 -1.40 -63.06 16 14 O -1.01 -57.08 14.63 -118.54 -1.73 -58.81 16 15 C -0.64 -26.60 5.87 22.58 0.13 -26.47 16 16 C -0.06 -2.13 9.56 22.22 0.21 -1.92 16 17 C -0.10 -2.31 10.04 22.35 0.22 -2.08 16 18 C -0.09 -1.49 10.03 22.22 0.22 -1.27 16 19 C -0.07 -1.41 9.80 22.58 0.22 -1.19 16 20 C -0.15 -5.05 5.87 -20.15 -0.12 -5.16 16 21 C 0.35 11.88 11.32 70.17 0.79 12.68 16 22 O -0.50 -24.14 12.66 25.95 0.33 -23.81 16 23 H 0.06 2.32 7.78 -2.39 -0.02 2.30 16 24 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 25 H 0.03 1.14 7.44 -2.39 -0.02 1.13 16 26 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 27 H 0.07 2.57 7.42 -2.39 -0.02 2.55 16 28 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 29 H 0.14 4.73 7.24 -2.91 -0.02 4.71 16 30 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.19 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -88.63 287.91 3.70 -84.93 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: 0.94 Total: 1.16 kcal Atomic # 6 Polarization: -38.92 SS G_CDS: 4.13 Total: -34.78 kcal Atomic # 7 Polarization: -93.79 SS G_CDS: -0.11 Total: -93.90 kcal Atomic # 8 Polarization: -142.87 SS G_CDS: -2.81 Total: -145.68 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 1.67 Total: 51.22 kcal Atomic # 16 Polarization: 137.18 SS G_CDS: -0.13 Total: 137.05 kcal Total: -88.63 3.70 -84.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751033321.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.736 kcal (2) G-P(sol) polarization free energy of solvation -88.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds